genome.fa.s4.2.7.7.80.10.50.1000.227.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  227  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74323575--74323635	31	2.0	31	90	3	97	39	13	6	40	1.70
74325875--74325899	13	1.9	13	100	0	50	44	0	8	48	1.32
74326870--74326907	9	4.2	9	89	0	58	10	13	0	76	1.02
74326913--74326942	7	4.1	7	95	4	51	56	0	0	43	0.99
74331182--74331224	21	2.2	21	84	15	58	44	20	4	30	1.72
74338392--74338540	78	1.9	78	91	2	246	19	30	12	37	1.89
74342184--74342227	22	2.0	22	82	8	54	36	13	9	40	1.76
74345189--74345225	15	2.3	17	90	9	60	21	0	0	78	0.75
74345252--74345291	21	2.0	20	90	5	62	35	5	22	37	1.76
74345213--74345369	76	2.1	75	83	3	192	31	7	18	43	1.77
74349169--74349555	44	8.7	43	71	9	195	31	18	20	28	1.97
74349169--74349325	43	3.6	43	84	3	172	31	19	21	28	1.97
74349396--74349656	44	5.8	44	76	6	198	31	16	22	29	1.96
74349168--74349582	228	1.8	227	85	3	584	32	18	20	28	1.96
74349481--74349662	95	1.9	95	81	0	220	32	15	22	29	1.95
74351386--74351424	20	2.0	20	90	10	62	25	15	0	58	1.37
74351647--74351688	22	1.9	22	85	9	59	28	7	4	59	1.44
74363440--74363614	44	3.8	45	76	9	167	29	19	22	29	1.98
74363716--74363752	18	2.2	18	85	9	51	54	13	24	8	1.66
74364651--74364686	19	1.9	18	88	5	54	83	2	0	13	0.76
74366846--74366902	24	2.4	24	80	11	64	59	1	5	33	1.30
74367309--74367366	29	1.9	29	89	6	89	63	3	0	32	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74369505--74369544	10	4.2	9	93	3	53	37	0	0	62	0.95
74369513--74369544	5	6.6	5	92	7	57	37	0	0	62	0.95
74369503--74369544	15	3.0	14	89	6	59	40	0	0	59	0.97
74369682--74369709	3	9.3	3	100	0	56	67	0	0	32	0.91
74370791--74370820	12	2.5	12	94	0	51	30	26	3	40	1.72
74377559--74377597	19	2.0	20	95	5	71	56	0	5	38	1.22
74377986--74378030	21	2.1	21	83	0	54	60	15	11	13	1.60
74380701--74380734	17	2.0	17	88	0	50	47	0	0	52	1.00
74380702--74380777	25	3.0	25	82	5	82	56	0	1	42	1.07
74380709--74380778	17	3.9	18	74	14	65	60	0	1	38	1.06
74380707--74380779	9	8.3	9	78	13	64	61	0	1	36	1.05
74381379--74381454	10	7.6	10	71	14	50	61	2	2	32	1.23
74381348--74381433	41	2.1	41	81	16	99	63	4	1	30	1.21
74381360--74381433	30	2.4	29	80	11	76	64	4	1	29	1.20
74381817--74381875	28	2.1	29	80	3	66	32	5	5	57	1.42
74395368--74395563	97	2.0	97	96	0	365	31	16	19	32	1.94
74397321--74397459	67	2.1	66	95	2	251	29	15	7	48	1.71
74398831--74398858	7	4.0	7	100	0	56	42	28	14	14	1.84
74400378--74400417	3	13.3	3	100	0	80	32	0	0	67	0.91
74401706--74401762	22	2.7	21	76	15	62	70	5	0	24	1.08
74402597--74402659	30	2.1	30	91	5	101	58	11	4	25	1.51
74402805--74403105	143	2.1	142	97	0	566	15	29	24	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74420249--74420328	6	13.2	6	87	12	119	83	0	0	16	0.64
74420244--74420332	38	2.3	39	94	5	155	83	0	0	16	0.65
74427173--74427238	33	2.0	33	90	0	105	28	18	18	34	1.94
74429943--74429991	24	2.0	25	96	4	91	34	8	8	48	1.62
74438066--74438119	6	9.2	6	82	9	67	81	0	3	14	0.82
74439704--74439751	18	2.5	19	83	6	53	77	0	10	12	1.00
74442321--74442371	25	2.0	25	100	0	102	7	27	37	27	1.84
74443417--74443455	19	2.1	18	85	9	51	61	2	7	28	1.37
74452090--74452181	3	32.0	3	72	12	68	3	29	1	66	1.14
74452085--74452140	23	2.4	25	82	11	73	1	28	0	69	0.98
74452714--74452754	21	2.0	21	85	4	57	39	0	0	60	0.96
74452752--74452802	18	2.7	18	79	11	50	35	0	7	56	1.28
74452787--74452813	13	2.1	13	100	0	54	22	0	7	70	1.12
74463781--74464036	131	2.0	130	88	0	386	34	18	19	27	1.95
74464653--74464687	18	2.0	17	88	5	52	62	0	5	31	1.18
74467902--74467940	18	2.2	17	86	13	53	33	0	20	46	1.51
74468059--74468087	8	3.6	8	100	0	58	24	13	27	34	1.93
74468174--74468271	23	4.3	23	90	2	162	20	21	26	31	1.98
74468176--74468264	45	2.0	45	95	0	160	19	22	26	31	1.97
74474438--74474476	18	2.2	17	86	13	53	33	0	20	46	1.51
74474595--74474623	8	3.6	8	100	0	58	24	13	27	34	1.93
74474711--74474829	23	5.3	23	92	2	179	19	22	26	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74474712--74474822	22	5.0	22	93	2	177	18	23	27	30	1.98
74474712--74474829	45	2.6	46	89	4	186	19	22	27	30	1.98
74476003--74476605	133	4.5	133	92	0	976	28	24	19	27	1.99
74476000--74476598	265	2.3	265	93	0	1009	27	24	19	27	1.99
74476271--74476606	45	7.6	45	67	11	163	27	25	20	26	1.99
74488175--74488434	131	2.0	130	89	0	394	35	18	18	28	1.94
74489052--74489086	18	2.0	17	88	5	52	62	0	5	31	1.18
74491278--74491320	21	2.2	20	87	8	61	76	0	0	23	0.78
74491285--74491328	21	2.1	21	83	8	54	72	2	2	22	1.07
74493576--74493670	9	9.9	9	68	20	59	60	2	0	37	1.09
74503521--74503595	13	5.8	13	82	6	89	37	20	6	36	1.79
74506255--74506287	16	2.2	15	89	10	50	42	3	0	54	1.15
74510413--74510466	27	2.0	27	100	0	108	40	33	7	18	1.78
74520816--74520873	30	1.9	30	86	6	82	18	32	27	20	1.97
74528501--74528539	11	3.4	11	83	13	51	17	7	2	71	1.21
74528502--74528546	23	1.9	23	90	4	72	17	8	2	71	1.23
74531782--74531818	14	2.6	15	83	12	51	56	0	5	37	1.22
74538908--74538944	14	2.6	15	83	12	51	56	0	5	37	1.22
74539001--74539039	15	2.6	16	84	8	55	74	0	25	0	0.82
74544182--74544229	16	3.2	16	70	24	50	52	0	0	47	1.00
74544187--74544258	8	9.0	8	76	8	67	58	0	2	38	1.13
74546161--74546212	22	2.4	22	93	0	86	21	28	32	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74549526--74549565	21	2.0	21	85	9	57	27	2	10	60	1.42
74555056--74555090	12	2.9	12	82	0	52	17	40	2	40	1.64
74556360--74556410	16	3.4	16	75	25	58	43	5	21	29	1.76
74558467--74558516	17	3.1	16	81	16	50	30	2	0	68	1.01
74562815--74562886	34	2.1	34	92	0	117	47	6	5	40	1.54
74562826--74562901	34	2.4	29	75	19	80	44	9	3	42	1.55
74574606--74574651	14	3.5	14	77	17	62	32	0	2	65	1.05
74575152--74575206	27	2.1	25	86	6	74	27	9	5	58	1.51
74575304--74575397	27	3.4	27	71	12	77	28	8	4	58	1.47
74576469--74576535	27	2.5	27	80	0	71	28	8	1	61	1.35
74576493--74576599	3	36.7	3	74	9	78	32	6	0	59	1.29
74576723--74576920	3	63.0	3	67	17	68	30	5	3	60	1.35
74576795--74576844	22	2.3	22	83	16	61	40	0	4	56	1.18
74576853--74576921	21	3.2	21	78	17	79	28	5	1	63	1.26
74576858--74576911	24	2.2	25	87	6	76	25	5	0	68	1.11
74577015--74577091	15	4.9	15	71	14	50	31	2	1	64	1.15
74577044--74577132	42	2.2	39	84	9	108	33	2	2	61	1.20
74577097--74577252	26	6.3	26	74	16	129	33	5	4	55	1.44
74577073--74577168	47	2.1	45	83	13	115	34	3	2	60	1.24
74577076--74577252	51	3.6	47	78	13	171	33	5	4	57	1.41
74577191--74577440	136	1.8	135	81	8	310	32	5	6	55	1.49
74581225--74581266	22	1.9	22	85	0	57	28	21	2	47	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74588658--74588765	44	2.5	42	86	3	135	43	19	22	14	1.87
74589547--74589743	75	2.7	74	85	5	256	31	17	20	30	1.96
74589636--74589781	73	2.0	74	84	1	195	29	17	21	32	1.96
74591523--74591629	28	3.8	28	92	0	160	29	25	10	34	1.89
74596591--74596745	28	5.5	28	73	3	139	29	34	18	18	1.95
74596561--74596747	57	3.2	57	90	1	275	29	34	17	18	1.94
74596561--74596716	29	5.4	29	72	4	127	29	35	17	17	1.93
74598726--74598804	28	2.8	28	90	0	104	30	21	10	37	1.86
74600785--74600837	13	4.0	13	78	4	52	16	52	9	20	1.71
74601023--74601078	27	2.1	27	86	0	76	5	19	3	71	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253