genome.fa.s4.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  112  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35177463--35177588	47	2.7	47	87	6	168	30	19	29	21	1.97
35181748--35181880	6	21.8	6	75	14	121	48	13	18	19	1.81
35181727--35181880	31	5.5	30	77	17	127	48	13	18	19	1.81
35181998--35182063	27	2.5	26	85	7	87	37	22	22	16	1.93
35181998--35182071	27	2.8	27	78	13	82	36	21	24	17	1.95
35182022--35182079	27	2.1	27	84	6	73	36	27	20	15	1.93
35182236--35182294	22	2.7	22	81	0	64	32	22	25	20	1.98
35182665--35182859	27	7.2	27	79	4	187	27	18	16	36	1.93
35182663--35182859	54	3.6	54	83	5	236	26	18	17	37	1.93
35182683--35182859	81	2.2	81	83	4	232	25	18	18	37	1.93
35182864--35183327	27	17.2	27	82	3	567	40	9	21	27	1.85
35187398--35187478	26	3.2	26	63	30	66	25	16	28	29	1.96
35189880--35189918	15	2.6	15	87	0	60	5	15	20	58	1.55
35191614--35191811	51	3.9	49	79	6	191	25	18	27	28	1.98
35194152--35194188	15	2.5	15	95	0	65	5	16	21	56	1.59
35195938--35196017	26	3.2	26	63	33	66	25	16	28	30	1.96
35195881--35196060	49	3.7	48	76	8	184	25	17	28	28	1.98
35198402--35198462	15	4.1	16	81	12	76	8	16	18	57	1.63
35200196--35200276	26	3.2	26	63	30	66	25	16	28	29	1.96
35203373--35203637	47	5.7	46	75	11	193	29	19	28	22	1.98
35212016--35212755	47	15.4	47	92	2	1158	28	30	7	33	1.86
35212293--35212371	25	3.3	25	66	10	74	31	29	6	32	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35212318--35212393	22	3.3	22	66	10	62	26	28	11	32	1.92
35212487--35212569	27	3.3	27	63	27	72	32	30	4	32	1.79
35212016--35212742	292	2.5	292	94	1	1270	28	30	8	33	1.86
35212610--35212685	22	3.3	22	64	10	62	26	30	11	31	1.92
35212585--35212663	25	3.3	25	63	10	65	31	30	6	31	1.82
35218672--35218853	51	3.6	51	83	3	170	25	15	29	29	1.96
35220663--35220862	45	4.6	42	81	8	149	24	29	20	26	1.99
35220704--35220878	45	4.0	45	87	3	241	25	28	21	24	1.99
35221682--35221821	47	3.0	47	90	0	226	44	12	14	28	1.82
35244296--35244771	53	9.0	53	77	10	375	23	23	16	36	1.94
35244301--35244824	262	2.0	262	93	1	899	24	23	16	36	1.94
35244750--35244871	47	2.6	47	93	0	199	27	22	14	36	1.93
35247708--35247748	20	2.2	20	86	8	59	29	24	0	46	1.53
35252959--35253141	67	2.8	65	76	10	178	31	15	29	23	1.96
35270909--35270947	19	2.1	19	100	0	78	43	25	15	15	1.86
35274225--35274281	26	2.2	26	83	3	69	26	19	19	35	1.95
35279687--35279942	47	5.4	47	91	1	404	28	30	8	32	1.88
35279687--35279942	96	2.7	96	92	2	403	28	30	8	32	1.88
35293669--35293695	14	1.9	14	100	0	54	59	11	14	14	1.62
35300519--35300556	19	2.0	20	85	15	53	39	23	0	36	1.55
35300786--35300956	93	1.8	93	91	0	279	29	28	20	21	1.98
35300786--35300953	46	3.6	45	78	10	178	30	28	20	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35331065--35331183	46	2.6	46	86	0	157	29	24	12	33	1.92
35340691--35340760	28	2.5	28	83	0	86	34	10	27	28	1.89
35342734--35342786	25	2.1	25	96	0	97	26	18	20	33	1.96
35345743--35345857	29	4.0	29	83	6	137	27	15	28	27	1.96
35349824--35349858	8	4.4	8	85	0	52	62	20	11	5	1.48
35349824--35349870	16	2.9	16	87	0	58	55	21	14	8	1.66
35349983--35350027	17	2.5	18	82	7	56	20	24	35	20	1.96
35349983--35350018	18	1.9	19	88	5	56	22	22	36	19	1.95
35350084--35350169	29	3.0	29	84	1	102	29	15	29	26	1.96
35350085--35350199	29	4.0	28	78	6	99	27	14	28	28	1.95
35354049--35354196	43	3.5	42	81	11	158	33	23	16	26	1.96
35365281--35365503	40	5.6	40	86	4	283	26	27	22	23	1.99
35365281--35365504	79	2.8	79	87	3	308	26	27	22	23	1.99
35375389--35375510	22	5.3	22	62	21	61	25	29	11	33	1.91
35375361--35375861	47	10.6	47	93	2	731	27	29	9	33	1.88
35377131--35377301	85	2.0	85	100	0	342	26	26	8	38	1.84
35383671--35383786	48	2.4	48	86	0	160	29	23	18	28	1.98
35383459--35383918	250	1.8	250	89	0	724	32	24	15	28	1.95
35393075--35393112	19	2.0	20	85	15	53	39	21	0	39	1.53
35393336--35393463	46	2.8	46	81	9	154	30	27	19	22	1.98
35393339--35393482	46	3.1	45	71	18	127	29	27	19	22	1.98
35397405--35397483	37	2.1	37	85	0	104	25	29	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35397602--35398153	47	11.7	47	95	0	935	28	30	8	32	1.87
35409729--35409917	71	2.6	71	85	8	229	31	31	16	20	1.95
35409685--35410134	175	2.6	175	96	0	819	30	30	18	21	1.96
35409903--35410055	71	2.1	72	90	1	236	30	28	16	23	1.97
35409974--35410197	104	2.2	104	92	1	369	31	31	18	17	1.95
35410526--35410589	30	2.2	29	81	10	76	29	28	6	35	1.82
35410533--35410589	30	1.9	30	85	3	80	29	24	7	38	1.82
35411402--35411671	48	5.6	48	75	6	219	28	20	28	22	1.98
35441454--35441790	48	7.0	48	93	0	548	35	5	26	31	1.81
35441932--35442034	37	2.8	37	96	0	188	23	20	32	24	1.98
35444714--35444884	93	1.8	93	91	0	279	29	30	19	20	1.97
35444706--35444875	46	3.7	45	78	12	184	31	30	18	20	1.96
35445438--35445474	20	1.9	18	89	10	56	35	21	0	43	1.53
35449435--35449543	37	2.9	37	95	0	191	26	31	19	22	1.98
35449746--35449975	48	4.8	48	91	3	356	30	26	7	36	1.85
35449689--35449974	98	2.9	98	92	4	452	30	25	7	36	1.83
35449706--35449975	146	1.8	147	88	6	418	30	25	7	36	1.84
35449945--35450232	47	6.1	47	93	0	459	26	28	11	33	1.91
35449850--35450232	141	2.7	141	84	4	470	27	28	10	33	1.90
35449897--35450232	94	3.6	94	85	5	437	27	28	10	33	1.90
35457132--35457448	27	11.8	27	89	2	413	25	13	20	40	1.90
35457130--35457448	136	2.4	134	86	4	453	25	13	21	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35469553--35469739	50	3.8	48	81	8	196	28	27	17	26	1.98
35469564--35469750	101	1.9	99	85	4	259	28	28	17	25	1.97
35471871--35471926	15	3.7	15	75	17	62	62	10	14	12	1.55
35474686--35474774	43	2.0	44	85	12	121	22	25	25	25	2.00
35475129--35475326	43	4.6	43	92	0	315	31	32	23	12	1.92
35475321--35475404	38	2.2	38	84	0	114	34	23	20	21	1.97
35477854--35477986	50	2.6	51	85	1	169	27	28	18	26	1.98
35486724--35486777	27	2.0	27	85	7	74	29	20	18	31	1.96
35488934--35488975	21	2.0	21	95	0	75	54	14	7	23	1.64
35489641--35489712	28	2.6	28	86	0	99	33	30	12	23	1.92
35492576--35492676	50	2.0	50	96	0	184	30	14	24	29	1.95
35493109--35493266	43	3.7	42	73	7	122	25	20	23	29	1.99
35498371--35498482	27	4.2	26	84	7	134	38	23	23	15	1.92
35498371--35498482	54	2.1	54	86	6	156	38	23	23	15	1.92
35504153--35505082	465	2.0	465	95	0	1673	23	33	15	27	1.95
35506689--35506794	27	3.9	28	83	9	130	38	22	22	16	1.92
35512912--35512940	14	2.0	15	93	6	51	27	0	20	51	1.47
35514084--35514276	56	3.4	56	89	1	280	27	13	23	34	1.93
35514087--35514307	56	3.9	55	80	9	171	28	13	24	33	1.93
35517287--35517612	159	2.1	159	86	1	456	30	27	19	21	1.98
35519382--35519445	22	2.9	22	80	0	74	31	21	26	20	1.98
35519814--35519914	27	3.8	26	84	10	114	29	7	20	41	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35528069--35528099	15	2.1	15	93	0	53	48	22	0	29	1.51
35528907--35528939	15	2.2	16	89	10	52	54	21	0	24	1.45
35540821--35540927	27	4.0	26	87	4	97	36	20	21	21	1.95
35540838--35540927	28	3.3	28	87	4	121	36	23	20	20	1.95
35544565--35544691	49	2.6	49	81	5	148	25	23	21	29	1.99
35550869--35551088	119	1.8	120	82	6	286	25	28	22	23	1.99
35550831--35551088	40	6.5	40	82	6	258	25	27	21	24	1.99
35555248--35555292	15	3.0	15	80	9	56	55	17	15	11	1.68
35558445--35558654	43	4.9	43	92	0	341	30	33	22	13	1.92
35558445--35558678	129	1.8	128	87	2	337	31	32	22	13	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253