Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  101  of  279  ( 33431 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32338542--32338577
15
2.5
14
86
8
54
22
11
0
66
1.22
32342549--32342642
40
2.4
39
84
8
120
36
37
12
13
1.84
32342567--32342642
40
1.9
40
91
0
125
35
35
14
14
1.87
32344832--32344956
17
6.9
18
78
17
93
36
12
15
36
1.84
32344831--32344956
19
6.9
19
84
10
183
37
11
15
35
1.84
32344839--32344956
35
3.3
35
93
3
191
37
12
14
35
1.84
32349417--32349474
24
2.4
24
85
0
71
29
24
17
29
1.97
32361060--32361260
100
2.0
100
100
0
402
40
18
21
18
1.91
32363892--32364204
72
4.3
72
85
6
403
31
15
17
35
1.91
32369393--32369422
5
6.2
5
96
3
53
0
16
0
83
0.65
32372304--32372355
22
2.3
23
81
15
65
55
0
3
40
1.18
32381190--32381214
2
12.5
2
100
0
50
52
48
0
0
1.00
32383022--32383204
39
4.7
39
86
0
258
21
21
26
31
1.98
32383022--32383204
78
2.3
78
92
1
305
21
21
26
31
1.98
32383702--32383955
126
2.0
126
99
0
499
25
22
16
36
1.94
32389387--32389424
14
2.6
14
87
4
58
47
0
7
44
1.32
32390845--32390926
32
2.6
32
82
0
101
51
17
3
28
1.62
32395345--32395380
16
2.2
16
100
0
72
33
22
5
38
1.77
32395689--32395899
3
70.7
3
98
0
406
0
34
0
65
0.93
32396384--32396437
21
2.6
21
80
16
67
37
44
0
18
1.50
32396406--32396467
32
1.9
32
83
0
79
43
37
0
19
1.51
32396993--32397169
41
4.4
40
85
2
194
23
21
19
35
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32396993--32397169
81
2.2
81
83
4
214
23
21
19
35
1.96
32397374--32397434
30
2.0
30
100
0
122
21
22
22
32
1.98
32399158--32399197
17
2.4
17
95
0
71
20
12
12
55
1.69
32400062--32400288
50
4.5
50
92
2
375
35
15
22
26
1.94
32400263--32400350
31
2.8
31
84
6
124
27
17
27
28
1.97
32400375--32400539
47
3.7
46
84
6
169
28
15
26
29
1.96
32400469--32400583
42
2.7
43
89
4
171
30
14
26
27
1.95
32403540--32403572
16
2.1
16
88
5
50
24
6
0
69
1.10
32408666--32408766
53
1.9
54
87
4
152
25
13
7
52
1.68
32409434--32409561
64
2.0
64
93
0
220
31
20
14
33
1.93
32409716--32410063
44
8.0
44
68
15
184
32
21
22
23
1.98
32409711--32409933
87
2.6
86
89
2
338
34
21
21
21
1.97
32409711--32410007
88
3.4
86
83
5
330
32
22
21
23
1.98
32409895--32410092
44
4.5
44
71
7
134
28
22
22
25
1.99
32409891--32410276
131
3.0
131
86
1
499
29
20
23
25
1.99
32410281--32410794
86
5.9
88
85
5
673
25
24
23
26
2.00
32410281--32410777
263
1.9
263
89
0
771
25
25
23
26
2.00
32410813--32411066
44
5.6
44
73
12
147
31
22
21
25
1.98
32411789--32411850
21
3.1
21
77
11
67
61
6
12
19
1.53
32413255--32413287
16
2.1
16
88
5
50
24
6
0
69
1.10
32425445--32425500
10
5.5
10
78
2
58
12
3
8
75
1.17
32425445--32425510
20
3.3
19
74
17
62
16
3
9
71
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32426144--32426228
20
4.2
20
76
11
75
61
1
15
22
1.41
32426143--32426215
21
3.4
22
76
16
57
64
1
12
21
1.35
32430947--32431140
94
2.1
90
80
9
205
27
19
27
24
1.99
32432361--32432399
14
2.7
14
88
4
51
30
10
15
43
1.80
32442934--32442973
18
2.2
19
86
8
57
20
47
22
10
1.79
32455459--32455505
21
2.2
22
92
3
78
21
19
38
21
1.94
32459663--32459712
22
2.2
23
89
3
75
22
0
30
48
1.51
32459821--32459893
20
3.8
20
71
18
73
30
0
24
45
1.54
32460138--32460519
126
3.0
126
92
0
638
34
17
20
28
1.95
32465912--32466013
42
2.5
39
76
19
91
35
6
0
56
1.32
32465952--32466020
21
3.3
20
75
18
61
31
5
2
59
1.36
32466276--32466351
16
4.8
15
68
16
55
21
1
5
72
1.12
32466276--32466351
15
5.1
15
76
4
57
21
1
5
72
1.12
32466934--32467009
16
4.9
15
72
4
53
21
1
5
72
1.12
32468931--32469063
48
2.8
46
81
10
142
51
5
9
33
1.57
32469158--32469189
15
2.1
15
94
0
55
59
0
0
40
0.97
32469198--32469229
11
2.9
11
90
0
55
40
0
18
40
1.51
32471878--32472072
105
1.9
105
86
0
282
34
12
22
30
1.91
32472152--32472924
386
2.0
386
100
0
1546
41
9
13
35
1.77
32472900--32472943
16
2.8
16
86
10
56
52
0
6
40
1.28
32473469--32473520
26
2.0
26
81
7
61
23
7
7
61
1.49
32488117--32488413
44
6.8
43
72
10
174
29
18
23
28
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32488072--32488373
44
6.8
46
69
11
150
30
18
22
27
1.98
32488068--32488402
175
1.9
175
82
4
426
30
19
22
28
1.98
32488826--32488865
16
2.5
17
84
11
50
55
35
5
5
1.44
32505954--32505991
13
2.9
13
88
0
58
36
44
0
18
1.50
32506147--32506204
28
2.2
26
87
6
80
46
25
0
27
1.53
32507333--32507467
17
7.4
17
63
14
63
31
5
13
49
1.64
32507328--32507477
37
4.1
37
91
0
246
33
5
14
47
1.66
32507350--32507475
17
6.8
19
64
13
66
31
6
14
47
1.69
32507478--32507575
9
11.0
9
77
2
90
22
11
27
38
1.88
32513003--32513057
26
2.0
28
86
13
80
78
5
10
5
1.08
32513580--32513628
13
3.5
13
76
15
53
77
2
14
6
1.05
32513614--32513671
28
2.0
29
86
10
82
79
0
10
10
0.94
32514601--32515046
229
1.9
229
99
0
883
36
16
13
33
1.88
32515274--32515382
44
2.5
44
82
5
123
24
20
23
31
1.98
32515227--32516331
176
6.3
175
80
6
1007
30
18
23
27
1.97
32515400--32516326
354
2.6
348
84
5
1105
30
17
24
27
1.97
32515980--32516081
43
2.3
45
83
3
127
33
13
21
31
1.92
32515398--32516328
176
5.3
175
82
3
1034
30
17
23
27
1.97
32519521--32519956
241
1.8
242
96
0
820
32
17
15
34
1.91
32519955--32520013
9
6.6
9
86
0
82
45
23
1
28
1.63
32519955--32520013
27
2.2
27
90
0
100
45
23
1
28
1.63
32520526--32520606
40
2.0
40
100
0
162
25
14
29
29
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32525187--32525281
46
2.1
46
95
0
172
34
4
4
56
1.38
32526139--32526248
43
2.6
43
97
0
202
24
26
20
28
1.99
32540387--32540439
27
2.0
26
96
0
88
30
22
16
28
1.96
32541021--32541050
15
2.0
15
93
0
51
50
20
23
6
1.71
32545584--32545620
19
1.9
19
100
0
74
35
0
0
64
0.94
32545856--32545920
32
2.0
32
100
0
130
36
3
0
60
1.13
32545856--32545906
16
3.2
16
69
20
52
39
3
0
56
1.18
32553369--32553456
44
2.0
44
95
0
158
32
17
13
36
1.89
32554248--32554352
52
2.0
52
100
0
210
34
13
17
35
1.88
32554699--32554793
48
2.0
48
100
0
190
30
21
25
23
1.99
32568306--32568348
21
2.1
20
82
4
50
25
6
6
60
1.48
32572473--32572618
72
2.0
72
100
0
292
43
13
9
32
1.77
32575654--32575761
26
4.2
26
95
0
180
33
7
23
36
1.83
32578720--32578777
30
1.9
30
85
0
80
12
27
37
22
1.89
32581450--32581511
27
2.3
27
83
8
74
32
11
14
41
1.81
32585579--32585736
27
5.9
27
77
10
146
20
25
20
33
1.97
32585579--32585718
54
2.6
54
87
2
201
19
25
21
34
1.96
32591007--32591114
26
4.2
26
93
0
189
32
7
24
36
1.83
32592735--32592893
27
5.9
27
82
10
184
18
26
21
33
1.97
32592732--32592893
54
3.0
54
90
2
247
18
26
21
33
1.96
32592735--32592893
81
2.0
80
83
6
205
18
26
21
33
1.97
32593855--32594016
44
3.8
43
75
8
143
33
22
20
23
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32595289--32595325
18
2.1
18
100
0
74
37
0
0
62
0.96
32599092--32599263
86
2.0
86
94
0
299
29
19
17
33
1.95
32601942--32602028
26
3.1
26
72
23
86
44
5
10
39
1.62
32607721--32607815
47
2.0
47
97
0
181
63
11
10
14
1.53
32609503--32609527
10
2.5
10
100
0
50
52
16
0
32
1.44
32610068--32610111
3
15.3
3
86
9
65
31
0
2
65
1.05
32610063--32610108
14
3.3
14
96
0
83
30
0
4
65
1.12
32610071--32610111
11
4.0
10
84
15
57
31
0
2
65
1.05
32610068--32610113
17
2.7
18
90
6
69
32
0
2
65
1.05
32610283--32610323
13
2.9
15
78
10
50
34
7
2
56
1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279