genome.fa.s8.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  162  of  279  ( 33431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53532744--53532922	60	3.0	60	83	0	214	17	8	44	30	1.78
53532818--53533068	99	2.5	99	83	3	308	14	8	45	31	1.76
53532980--53533105	39	3.2	39	86	0	171	11	4	49	34	1.59
53533002--53533225	21	11.4	21	65	15	102	11	4	49	34	1.59
53532878--53533183	138	2.2	138	82	1	353	13	7	46	33	1.70
53533041--53533225	60	3.1	60	80	6	191	10	3	50	34	1.55
53533143--53533222	18	4.3	18	67	14	54	10	3	51	35	1.53
53533138--53533708	57	9.8	56	79	9	506	12	8	47	31	1.71
53533000--53533222	39	5.7	39	73	11	154	11	4	48	35	1.59
53533101--53533321	39	5.7	39	71	13	134	12	5	48	32	1.65
53533296--53533345	21	2.4	21	89	0	73	14	10	54	22	1.69
53533357--53533435	18	4.2	18	65	15	52	11	6	49	32	1.64
53533317--53533999	96	7.1	96	84	7	832	12	8	47	31	1.72
53533470--53533537	21	3.2	21	82	0	73	17	7	50	25	1.72
53533424--53533594	81	2.2	78	85	7	220	14	8	46	30	1.74
53533367--53533945	138	4.1	138	77	14	536	12	8	46	32	1.71
53533567--53533999	39	11.2	39	71	16	181	11	8	47	32	1.70
53533702--53533825	57	2.1	57	86	7	169	11	8	48	32	1.68
53533840--53533885	21	2.2	21	88	0	65	10	0	54	34	1.36
53533848--53533944	21	4.8	21	75	10	76	11	3	49	36	1.54
53533800--53533981	60	3.1	60	84	3	237	12	5	48	32	1.64
53533931--53534073	72	2.0	72	87	0	205	11	8	46	32	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53533869--53534131	132	2.0	132	83	5	336	11	6	47	33	1.67
53533775--53534095	39	8.4	39	71	15	186	11	6	47	33	1.67
53534028--53534155	60	2.1	60	89	0	193	10	6	50	32	1.61
53534001--53534193	99	1.9	99	88	0	287	11	6	48	34	1.64
53534088--53534191	39	2.7	39	90	0	154	11	5	50	32	1.62
53533855--53534172	171	1.9	171	91	1	521	11	6	47	34	1.65
53534067--53534437	21	18.2	21	65	17	104	14	5	48	31	1.67
53534127--53534437	60	5.1	60	71	16	217	15	5	48	30	1.68
53534170--53534222	27	2.0	27	96	0	97	22	1	52	22	1.56
53534133--53534259	66	1.9	66	88	3	193	16	3	49	30	1.61
53534165--53534225	27	2.5	24	80	17	79	21	1	52	24	1.56
53534199--53534380	39	4.6	38	75	6	121	15	4	47	32	1.65
53534274--53534382	39	2.8	39	82	0	137	13	3	48	33	1.60
53534274--53534725	99	4.4	99	72	11	257	13	7	46	32	1.72
53534373--53534607	39	6.2	39	77	6	223	13	7	46	32	1.71
53534287--53534665	210	1.8	210	83	5	507	13	7	46	32	1.71
53534524--53534641	21	5.9	21	63	22	65	16	5	45	31	1.72
53534562--53534733	60	2.9	59	80	6	177	15	8	46	29	1.76
53537548--53537581	18	1.9	17	94	5	59	44	0	0	55	0.99
53541289--53541422	39	3.4	39	82	0	115	17	6	44	30	1.75
53541334--53541524	99	1.9	100	84	3	260	14	8	43	32	1.77
53541438--53541565	39	3.3	39	77	0	139	10	7	47	34	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53541458--53541719	99	2.7	97	80	4	312	11	6	48	33	1.65
53541297--53541641	138	2.5	138	78	0	330	13	8	44	32	1.74
53541541--53541683	21	7.2	21	65	13	70	11	4	49	33	1.61
53541499--53541680	60	3.1	60	80	3	192	10	6	50	32	1.64
53541598--53541938	60	5.8	60	84	4	444	11	6	48	32	1.66
53541497--53541953	177	2.8	156	85	8	432	12	7	48	32	1.67
53541541--53541945	177	2.3	176	90	3	564	12	6	47	32	1.68
53541559--53541779	39	5.7	39	73	13	152	13	6	48	32	1.67
53541754--53541803	21	2.4	21	89	0	73	14	10	54	22	1.69
53541815--53541860	21	2.2	21	88	0	65	10	0	54	34	1.36
53541596--53541939	117	2.9	116	83	4	442	11	6	48	32	1.66
53541598--53541953	177	2.0	177	97	1	678	12	6	48	32	1.67
53542176--53542293	42	2.9	41	65	21	95	7	7	51	33	1.59
53542231--53542374	60	2.4	60	84	0	180	11	6	50	31	1.66
53542176--53542332	81	1.9	81	92	0	260	10	6	50	33	1.62
53542208--53542371	21	8.1	21	70	13	92	11	5	50	32	1.62
53542307--53542521	39	5.7	39	79	6	226	13	6	46	33	1.70
53542458--53542575	21	5.9	21	63	22	65	16	5	45	31	1.72
53542307--53542563	78	3.4	74	76	10	241	14	7	45	33	1.72
53542496--53542667	60	2.9	59	80	6	177	15	8	46	29	1.76
53545482--53545515	18	1.9	17	94	5	59	44	0	0	55	0.99
53551349--53551424	37	2.1	37	94	0	134	36	22	10	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53554924--53554966	18	2.3	19	84	11	54	27	4	2	65	1.25
53558644--53558720	31	2.5	31	79	4	86	38	11	12	36	1.80
53558935--53559005	35	2.0	35	100	0	142	40	14	11	33	1.81
53570927--53570973	21	2.2	22	92	3	78	21	38	19	21	1.94
53582055--53582295	123	1.9	125	89	3	380	33	14	14	37	1.87
53583035--53583065	15	2.1	15	93	0	53	35	25	16	22	1.94
53584957--53584991	18	1.9	18	88	0	52	20	20	28	31	1.97
53585877--53585909	14	2.4	14	100	0	66	18	18	24	39	1.92
53586250--53586280	15	2.1	15	93	0	53	38	29	12	19	1.89
53586289--53586326	20	1.9	20	88	0	58	26	18	18	36	1.94
53589528--53589882	50	6.8	50	82	6	388	20	29	23	26	1.99
53589527--53589882	106	3.4	106	92	3	564	20	28	23	26	1.99
53589527--53589882	156	2.3	161	83	6	455	20	28	23	26	1.99
53589977--53590008	13	2.5	13	94	0	55	56	12	0	31	1.37
53590220--53590277	30	1.9	30	89	0	89	31	24	3	41	1.71
53591352--53591406	27	2.0	27	89	0	83	29	5	27	38	1.79
53593220--53593370	53	2.8	53	90	2	221	26	16	27	29	1.97
53596880--53597029	67	2.2	67	81	8	171	32	17	28	21	1.96
53596904--53597087	67	2.8	64	77	8	194	29	17	29	22	1.97
53601327--53601476	67	2.2	67	81	8	171	32	17	28	21	1.96
53601351--53601535	67	2.9	64	77	10	189	29	17	30	23	1.97
53604449--53604487	20	2.0	21	85	10	55	69	5	5	20	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53604407--53604877	208	2.3	208	93	0	809	42	7	11	38	1.70
53612548--53612593	21	2.1	23	84	8	60	50	4	4	41	1.42
53619530--53619577	23	2.1	23	96	0	87	41	10	8	39	1.69
53630412--53630443	16	1.9	17	93	6	57	18	18	31	31	1.95
53636838--53636879	22	2.0	22	95	4	77	42	2	2	52	1.27
53639935--53639976	22	2.0	21	86	13	59	64	9	9	16	1.49
53647627--53647676	17	2.7	20	78	18	70	10	0	44	46	1.37
53652267--53652316	17	2.7	20	78	18	70	10	0	44	46	1.37
53653094--53653299	99	2.1	99	99	0	405	36	22	8	32	1.85
53654876--53654938	30	2.1	31	81	3	74	47	7	6	38	1.58
53663156--53663192	15	2.5	15	95	0	65	40	0	27	32	1.57
53664370--53664445	38	2.0	40	86	5	111	23	26	26	23	2.00
53664427--53664518	43	2.1	43	95	0	166	11	26	33	28	1.92
53664437--53664531	43	2.2	43	90	0	145	13	24	33	28	1.93
53665879--53665931	26	2.0	26	92	0	88	32	9	22	35	1.86
53688254--53688319	21	3.1	21	88	0	105	43	18	24	13	1.86
53695011--53695121	47	2.4	47	77	11	129	36	19	16	27	1.93
53695885--53695913	4	7.2	4	100	0	58	0	24	0	75	0.80
53697029--53697073	23	2.0	23	90	0	72	22	35	13	28	1.92
53697038--53697087	23	2.2	23	85	0	64	26	36	8	30	1.85
53698528--53698558	15	2.1	15	93	0	53	58	3	0	38	1.15
53699212--53699287	39	2.0	38	92	2	125	23	23	15	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53720513--53720541	3	9.7	3	100	0	58	34	65	0	0	0.93
53726061--53726097	20	1.9	18	89	10	56	35	21	0	43	1.53
53751017--53751084	29	2.3	30	85	7	86	57	2	0	39	1.14
53751074--53751113	16	2.6	16	85	14	57	65	0	0	35	0.93
53751074--53751144	23	3.1	23	70	8	65	57	1	0	40	1.07
53767666--53767700	6	5.8	6	93	0	52	2	42	0	54	1.15
53769973--53770029	29	2.0	29	85	0	78	22	10	7	59	1.54
53770164--53770207	12	3.7	12	87	0	70	63	2	0	34	1.07
53770161--53770211	24	2.1	24	100	0	102	62	3	0	33	1.13
53771870--53771926	16	3.6	16	80	13	55	31	5	5	57	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279