Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  167  of  279  ( 33431 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55470289--55470350
22
2.7
22
75
12
54
64
3
3
29
1.25
55470542--55470598
28
2.1
28
90
3
89
57
5
0
36
1.21
55470723--55470795
23
3.4
22
77
9
71
56
1
5
36
1.31
55470729--55470798
21
3.0
22
80
17
72
58
1
5
34
1.31
55471406--55471448
11
3.9
11
90
0
50
4
6
2
86
0.79
55471405--55471445
16
2.6
15
84
3
55
4
7
2
85
0.81
55472876--55473179
87
3.4
87
88
11
463
34
19
19
25
1.96
55472966--55473160
97
2.0
95
94
3
338
34
21
18
25
1.96
55479351--55479397
25
2.0
25
83
8
62
53
4
14
27
1.60
55488532--55488577
22
2.2
21
88
7
67
54
8
4
32
1.51
55489270--55489331
22
2.7
22
77
7
61
66
3
3
27
1.23
55489522--55489578
28
2.1
28
90
3
89
57
5
0
36
1.21
55489703--55489775
23
3.4
22
77
9
71
56
1
5
36
1.31
55489709--55489778
21
3.0
22
80
17
72
58
1
5
34
1.31
55492871--55493004
26
5.2
26
94
0
232
35
25
7
31
1.84
55496531--55496570
21
2.0
20
85
5
53
17
45
20
17
1.86
55497603--55497633
12
2.6
12
94
0
53
16
48
25
9
1.76
55500869--55500915
15
3.4
14
85
8
60
10
6
2
80
0.96
55507691--55507741
18
3.1
16
76
17
59
58
3
0
37
1.16
55507709--55507739
9
3.4
9
95
0
53
61
6
0
32
1.21
55512278--55512337
22
2.7
23
73
19
63
66
6
0
26
1.16
55512287--55512320
4
8.0
4
90
9
50
73
2
0
23
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55513674--55513726
23
2.4
22
76
20
56
9
18
1
69
1.25
55516076--55516135
22
2.7
23
73
19
63
66
6
0
26
1.16
55516085--55516118
4
8.0
4
90
9
50
73
2
0
23
0.97
55517248--55517280
13
2.5
13
85
14
50
39
0
27
33
1.57
55524518--55524555
15
2.5
15
84
12
51
42
0
44
13
1.43
55524548--55524628
3
27.0
3
80
5
92
59
0
38
2
1.11
55528959--55529007
21
2.3
21
86
6
73
2
24
10
63
1.37
55551979--55552105
63
2.0
63
87
3
184
29
24
14
30
1.95
55555278--55555320
22
2.0
22
85
0
59
58
11
11
18
1.63
55555285--55555325
11
3.7
11
80
0
55
56
9
14
19
1.66
55555286--55555335
22
2.3
22
86
6
66
60
6
16
18
1.55
55560492--55560694
46
4.3
48
88
7
265
35
14
21
28
1.92
55560426--55560694
98
2.7
98
93
0
457
34
14
22
28
1.93
55560658--55560766
37
3.0
37
90
2
177
35
16
22
24
1.95
55563267--55563549
18
15.3
18
71
11
169
36
15
12
35
1.86
55563267--55563549
36
7.6
36
71
12
196
36
15
12
35
1.86
55563348--55563549
72
2.8
71
81
5
228
36
15
12
35
1.86
55563713--55563737
6
4.2
6
100
0
50
52
16
16
16
1.76
55563717--55563821
45
2.3
45
88
0
156
40
20
20
19
1.91
55564079--55564119
5
8.0
5
89
5
64
41
17
0
41
1.49
55564473--55564533
21
2.9
21
79
13
63
47
18
0
34
1.49
55579307--55579359
27
2.0
27
92
0
88
30
11
28
30
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55586238--55586303
24
2.7
23
84
13
71
51
15
1
31
1.52
55590036--55590065
9
3.2
9
95
4
51
66
0
0
33
0.92
55590038--55590068
10
3.2
10
95
4
55
64
0
0
35
0.94
55591039--55591064
12
2.2
12
100
0
52
73
0
0
26
0.84
55602379--55602420
20
2.2
19
83
12
50
2
14
11
71
1.24
55606256--55606307
16
3.3
15
84
10
59
48
5
17
28
1.70
55609132--55609470
168
2.0
168
100
0
678
36
10
5
47
1.61
55615859--55615916
29
2.0
29
96
0
107
50
24
8
17
1.74
55618765--55618893
46
2.8
46
95
0
222
29
29
21
19
1.98
55618773--55618912
46
3.0
45
88
4
140
28
29
21
20
1.98
55624798--55625063
131
2.0
131
84
0
343
34
19
18
27
1.95
55626056--55626098
10
4.3
10
81
0
50
46
4
9
39
1.57
55628333--55628507
46
3.8
46
74
13
187
29
30
19
21
1.97
55628341--55628534
93
2.1
93
92
0
325
28
30
19
22
1.98
55628387--55628533
47
3.1
47
69
16
151
27
30
18
23
1.97
55631775--55631812
20
1.9
20
84
10
51
42
13
23
21
1.88
55633712--55633893
46
4.0
46
93
0
283
39
14
23
21
1.91
55643896--55643940
21
2.1
21
84
8
56
53
2
0
44
1.13
55661404--55661455
26
2.0
27
92
3
88
44
21
17
17
1.87
55663750--55663779
16
1.9
16
93
6
53
60
10
0
30
1.30
55666466--55666503
20
2.0
19
85
10
51
21
7
5
65
1.38
55667586--55667619
14
2.2
16
90
10
54
73
0
0
26
0.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55672539--55672578
21
1.9
21
89
0
62
0
25
12
62
1.30
55674426--55674453
14
2.0
14
100
0
56
14
28
7
50
1.69
55690429--55690468
21
1.9
21
85
10
55
37
2
2
57
1.26
55696800--55696869
10
7.4
9
72
15
52
35
0
4
60
1.17
55697375--55697431
19
2.8
19
80
17
62
43
3
1
50
1.29
55699015--55699068
21
2.6
21
76
5
56
61
1
0
37
1.07
55699013--55699068
27
2.1
27
83
6
69
60
1
0
37
1.07
55701049--55701109
31
2.0
31
90
6
97
37
9
6
45
1.63
55702871--55702913
20
2.1
20
82
4
50
18
6
6
67
1.37
55703531--55703556
12
2.2
12
100
0
52
34
0
0
65
0.93
55710458--55710558
19
5.3
19
70
14
75
59
0
8
31
1.28
55710452--55710560
56
1.9
56
98
0
209
60
0
9
30
1.28
55755298--55755491
16
12.2
15
69
15
72
24
10
0
64
1.28
55755325--55755666
5
63.6
5
67
22
74
24
14
0
60
1.39
55755369--55755405
19
1.9
19
100
0
74
27
5
0
67
1.12
55755359--55755419
29
2.1
29
90
6
97
27
6
0
65
1.17
55755359--55755423
30
2.2
31
89
8
100
27
7
0
64
1.20
55755444--55755518
28
2.7
28
83
8
82
26
12
1
60
1.40
55755499--55755542
23
1.9
22
90
9
70
29
22
0
47
1.51
55755500--55755543
12
3.8
12
77
17
56
27
22
0
50
1.50
55755548--55755611
31
2.1
31
91
5
103
17
17
0
65
1.27
55755632--55755666
11
3.3
11
96
4
63
25
17
0
57
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55755600--55755665
17
3.8
17
82
9
73
28
15
0
56
1.40
55755292--55755715
147
2.9
148
74
14
401
23
12
0
62
1.36
55755292--55755721
148
2.9
146
74
14
393
23
13
0
62
1.36
55755632--55755740
10
10.6
10
75
13
53
25
11
0
63
1.27
55755718--55755772
25
2.2
25
86
0
74
38
7
0
54
1.28
55756907--55756940
18
1.9
17
88
5
50
32
0
14
52
1.42
55757631--55757693
28
2.2
28
80
8
65
36
17
0
46
1.49
55757648--55757962
112
2.8
111
90
5
494
35
14
0
50
1.43
55757857--55757881
5
5.0
5
100
0
50
40
0
0
60
0.97
55761075--55761188
58
2.0
58
94
0
201
27
24
15
32
1.96
55763760--55763851
46
2.0
46
86
0
130
20
20
15
43
1.88
55765768--55765816
3
17.3
3
76
19
52
69
0
2
28
1.00
55765774--55765812
11
3.5
11
92
0
69
69
0
2
28
1.02
55765775--55765816
19
2.2
19
87
8
59
71
0
2
26
0.98
55765786--55765861
20
3.7
21
77
10
68
59
6
1
32
1.32
55766059--55766117
30
1.9
31
86
3
84
30
22
1
45
1.62
55767991--55768066
27
2.8
28
75
16
79
56
1
0
42
1.07
55770974--55771005
14
2.3
14
94
0
55
68
6
0
25
1.12
55773638--55773721
29
3.0
27
68
16
64
58
1
3
36
1.23
55773998--55774056
22
2.7
21
77
12
55
40
1
3
54
1.27
55775622--55775665
23
1.9
23
85
0
61
61
2
0
36
1.09
55776136--55776176
9
4.6
9
90
0
55
43
0
4
51
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55779510--55779573
21
3.2
21
68
28
66
45
10
4
39
1.60
55779510--55779591
39
2.1
39
100
0
164
45
10
4
39
1.61
55783288--55783320
17
2.0
17
94
5
59
36
15
0
48
1.45
55783607--55783788
46
4.0
46
88
1
249
21
23
14
40
1.91
55786085--55786193
53
2.1
53
81
5
123
26
14
22
35
1.93
55792140--55792272
49
2.7
50
83
5
164
27
28
17
27
1.97
55792140--55792410
46
5.7
47
80
10
213
26
28
16
28
1.97
55792188--55792410
46
4.8
46
83
7
220
24
29
17
28
1.97
55792140--55792410
92
2.9
92
82
9
282
26
28
16
28
1.97
55792894--55792946
11
4.9
11
79
4
54
33
0
1
64
1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279