Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  96  of  279  ( 33431 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31006440--31006471
16
2.0
16
100
0
64
50
25
12
12
1.75
31011381--31011451
37
1.9
37
86
11
101
76
2
18
2
1.04
31011391--31011440
6
8.2
6
83
14
50
76
2
20
2
0.99
31011501--31011531
12
2.6
12
100
0
62
45
12
16
25
1.83
31013712--31013808
30
3.2
30
73
5
99
27
26
16
28
1.97
31019526--31019604
40
2.0
39
94
0
131
24
21
29
24
1.98
31028285--31028614
46
7.6
44
73
12
204
31
21
20
25
1.98
31030231--31030265
3
11.7
3
88
11
54
28
2
0
68
1.04
31030808--31030838
16
1.9
16
93
0
53
35
6
3
54
1.42
31043117--31043747
44
14.6
44
70
12
271
32
21
21
25
1.98
31043339--31043501
87
1.9
87
85
0
227
33
22
22
20
1.97
31043164--31043787
301
2.1
301
96
0
1167
32
20
21
25
1.98
31045365--31045399
3
11.7
3
88
11
54
28
2
0
68
1.04
31045942--31045972
16
1.9
16
93
0
53
35
6
3
54
1.42
31047347--31047393
23
2.0
23
88
8
69
46
6
2
44
1.40
31047958--31047991
17
1.9
18
94
5
61
29
2
0
67
1.05
31049054--31049087
17
1.9
18
88
5
52
50
0
5
44
1.26
31058154--31058185
7
4.6
7
92
0
55
28
3
12
56
1.51
31058662--31058720
30
2.0
30
89
0
91
35
40
11
11
1.79
31058973--31058998
13
2.0
13
100
0
52
38
53
0
7
1.30
31070732--31070786
21
2.6
21
97
0
101
18
32
30
18
1.95
31077467--31077501
18
1.9
18
88
11
54
28
11
0
60
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31081629--31081670
14
2.9
15
82
3
50
66
0
28
4
1.12
31087076--31087102
13
2.1
13
100
0
54
22
37
25
14
1.93
31088326--31088387
27
2.3
26
78
8
70
37
0
11
51
1.38
31089840--31089880
17
2.4
17
100
0
82
14
24
43
17
1.86
31099043--31099080
13
2.7
14
84
12
51
81
0
15
2
0.80
31099043--31099117
28
3.0
25
76
17
75
77
0
21
1
0.85
31099036--31099117
27
3.0
27
72
10
76
75
0
23
1
0.87
31111702--31111739
18
2.2
18
86
9
53
10
15
5
68
1.36
31120475--31120528
26
2.0
27
89
3
83
50
0
0
50
1.00
31120504--31120556
19
2.8
19
83
13
74
39
0
0
60
0.97
31120504--31120547
17
2.4
18
92
7
72
38
0
0
61
0.96
31120532--31120565
13
2.6
14
90
9
54
41
0
0
58
0.98
31120641--31120681
19
2.1
20
86
13
59
34
2
2
60
1.23
31122849--31122883
10
3.5
10
84
0
52
31
0
0
68
0.90
31122857--31122882
11
2.4
11
100
0
52
23
0
0
76
0.78
31127075--31127275
106
1.9
106
96
0
375
29
20
19
30
1.97
31128691--31128810
30
4.1
30
81
7
131
31
21
3
43
1.69
31129862--31129922
17
3.8
17
78
18
60
36
6
3
54
1.43
31141558--31141869
78
3.8
77
77
12
284
28
15
22
33
1.94
31141691--31141720
14
2.1
14
93
0
51
23
6
3
66
1.30
31141644--31142134
87
5.6
86
80
10
532
26
17
19
36
1.94
31141952--31141985
16
2.1
17
88
5
52
17
11
5
64
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31141808--31142302
192
2.7
183
81
10
557
27
17
17
36
1.93
31142141--31142169
15
1.9
15
100
0
58
13
6
6
72
1.26
31142246--31142358
55
2.1
55
93
3
192
28
16
17
37
1.92
31142629--31142730
30
3.4
30
83
2
125
30
22
2
44
1.68
31143951--31144019
19
3.5
19
72
14
59
31
4
4
59
1.37
31154725--31154756
12
2.7
12
90
0
55
59
0
40
0
0.97
31161361--31161548
51
3.7
51
82
2
229
29
25
17
27
1.97
31161361--31161548
102
1.9
100
85
2
259
29
25
17
27
1.97
31164907--31164961
11
5.5
10
79
12
60
34
10
20
34
1.87
31165009--31165116
24
4.4
25
83
4
112
31
21
21
25
1.98
31165033--31165116
26
3.3
26
83
6
111
30
19
21
28
1.97
31165270--31165374
31
3.4
31
97
0
192
35
16
26
21
1.94
31166723--31166905
96
1.9
97
86
3
262
30
24
17
27
1.97
31167984--31168038
19
2.8
19
75
25
60
76
0
3
20
0.94
31167981--31168032
16
3.5
15
77
12
63
76
0
3
19
0.93
31171742--31171791
10
5.0
10
81
13
59
68
0
8
24
1.16
31172906--31172982
38
2.0
38
100
0
154
18
23
7
50
1.72
31173332--31173378
13
3.5
13
88
8
60
17
0
63
19
1.30
31173343--31173383
5
8.6
5
86
10
59
21
0
63
14
1.30
31173374--31173433
30
2.0
31
90
9
97
41
0
40
18
1.50
31181914--31182071
42
3.8
41
73
14
126
42
15
22
18
1.89
31186994--31187029
18
2.0
18
88
0
54
19
5
5
69
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31188693--31188877
27
6.9
27
85
2
228
27
26
8
37
1.84
31188693--31188877
81
2.3
81
85
0
262
27
26
8
37
1.84
31189725--31189773
20
2.5
20
89
0
80
36
10
18
34
1.85
31190742--31190768
13
2.1
13
100
0
54
22
7
18
51
1.70
31195205--31195288
42
2.0
40
86
8
116
23
32
23
20
1.98
31196270--31196389
24
5.0
24
69
10
93
38
20
21
20
1.94
31201677--31201821
42
3.5
42
80
1
130
42
17
21
19
1.90
31205220--31205288
29
2.4
29
100
0
138
24
21
28
24
1.99
31207018--31207043
4
6.5
4
100
0
52
23
0
0
76
0.78
31207797--31207876
21
3.8
21
76
15
83
16
38
25
20
1.92
31210405--31210439
6
5.8
6
100
0
70
14
17
17
51
1.77
31225091--31225248
64
2.5
64
72
3
158
32
20
24
22
1.98
31227984--31228040
28
2.1
27
84
12
73
5
17
5
71
1.23
31229863--31229925
30
2.1
30
90
0
99
23
3
12
60
1.47
31230366--31230422
21
2.6
21
83
5
60
36
0
5
57
1.21
31231996--31232040
15
2.9
15
81
12
54
51
0
2
46
1.13
31231996--31232041
17
2.9
16
84
9
58
52
0
2
45
1.13
31232080--31232117
18
2.1
19
85
5
51
36
5
5
52
1.47
31235519--31235547
14
2.0
15
93
6
51
48
20
0
31
1.50
31237914--31238062
68
2.2
68
86
2
201
21
30
19
28
1.97
31237935--31238083
68
2.2
68
81
2
183
22
30
20
26
1.98
31241809--31241870
31
2.0
31
81
9
74
20
17
0
61
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31242741--31242798
3
19.3
3
100
0
116
32
0
0
67
0.91
31243160--31243259
53
1.9
52
87
4
148
29
18
17
36
1.93
31244205--31244250
20
2.3
20
96
0
83
30
23
32
13
1.93
31244772--31244858
39
2.2
39
87
6
122
35
21
5
36
1.78
31245817--31245872
27
2.0
28
83
10
71
33
0
19
46
1.50
31246359--31246508
39
3.7
39
83
5
192
22
12
28
36
1.91
31247961--31247986
13
2.0
13
100
0
52
15
7
7
69
1.35
31248159--31248213
21
2.6
21
77
11
58
14
10
7
67
1.41
31248280--31248327
19
2.6
17
78
12
51
31
12
4
52
1.58
31251096--31251133
8
4.8
8
93
0
67
2
26
21
50
1.62
31251096--31251140
16
2.8
16
89
0
54
4
24
17
53
1.62
31260964--31261026
1
63.0
1
74
0
54
87
1
7
3
0.71
31260964--31261074
13
8.4
12
81
15
105
82
2
11
2
0.87
31260975--31261074
6
14.7
7
68
20
61
82
3
13
2
0.88
31260984--31261082
19
5.0
19
72
15
58
78
4
15
2
0.98
31261898--31261959
30
2.1
30
100
0
124
37
9
19
33
1.84
31262199--31262247
20
2.5
20
96
0
89
22
12
24
40
1.88
31262266--31262944
143
4.7
143
86
1
921
30
19
21
28
1.98
31263370--31263425
25
2.2
25
96
0
103
48
30
14
7
1.70
31268159--31268193
17
2.1
17
100
0
70
17
34
31
17
1.93
31280537--31280582
17
2.7
17
80
9
58
76
13
0
10
1.03
31281733--31281816
26
3.3
25
68
18
75
26
14
3
55
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31281722--31281835
50
2.3
51
89
4
178
23
13
2
60
1.45
31290195--31290310
23
5.0
23
67
12
83
17
28
22
31
1.96
31290697--31290832
46
3.0
46
86
2
175
41
15
22
20
1.90
31290920--31290963
13
3.4
13
77
0
52
38
2
22
36
1.67
31299811--31299873
29
2.2
28
83
8
74
73
7
14
4
1.23
31301478--31301653
64
2.7
64
83
4
210
29
15
13
41
1.85
31301869--31302125
133
1.9
133
88
1
390
28
16
26
28
1.97
31301872--31302185
133
2.4
132
81
6
359
28
16
26
28
1.97
31302238--31303157
176
5.2
176
79
6
850
31
17
22
28
1.97
31303299--31303341
13
3.4
13
78
15
54
81
9
0
9
0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279