Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  94  of  279  ( 33431 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30515861--30515912
22
2.3
22
86
3
68
57
3
0
38
1.17
30517024--30517067
22
2.0
21
91
4
70
6
22
25
45
1.77
30521245--30521527
50
5.6
50
81
5
293
31
26
16
25
1.97
30521295--30521476
101
1.8
101
90
2
294
29
26
18
26
1.98
30521224--30521527
151
2.0
152
86
2
423
30
26
16
25
1.97
30524261--30524304
20
2.3
18
84
7
52
22
29
36
11
1.89
30525960--30525993
13
2.6
13
95
0
59
41
44
2
11
1.56
30526323--30526362
21
1.9
21
89
0
62
35
2
2
60
1.24
30532572--30532637
29
2.3
30
92
7
111
40
0
24
34
1.55
30535560--30535748
47
3.9
47
83
5
191
29
30
16
23
1.96
30541525--30542183
329
2.0
329
99
0
1309
32
26
19
21
1.97
30550550--30550616
30
2.2
31
84
12
86
28
2
5
62
1.33
30553201--30553266
27
2.7
23
79
13
69
39
1
0
59
1.07
30553199--30553252
27
2.0
27
85
7
74
37
1
0
61
1.07
30562707--30562735
3
9.7
3
100
0
58
68
0
0
31
0.89
30566502--30566541
19
2.2
19
86
4
55
57
0
20
22
1.41
30567587--30567672
44
2.0
43
93
2
145
47
1
4
46
1.30
30567636--30567669
18
1.9
17
88
5
50
58
0
0
41
0.98
30577800--30577850
25
2.0
25
92
0
84
39
5
17
37
1.74
30577803--30577850
12
3.9
12
75
5
51
39
4
18
37
1.70
30580365--30580415
25
2.0
25
92
0
84
39
5
17
37
1.74
30580368--30580415
12
3.9
12
75
5
51
39
4
18
37
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30585149--30585189
21
2.0
21
90
0
64
19
29
21
29
1.98
30591072--30591112
19
2.2
19
90
0
64
39
14
4
41
1.67
30594890--30594927
6
6.5
6
90
3
60
47
0
52
0
1.00
30599089--30599137
22
2.2
22
92
0
80
28
4
20
46
1.68
30599060--30599150
22
4.2
22
69
23
59
29
7
19
42
1.79
30599596--30599639
14
3.2
14
90
3
63
38
13
6
40
1.71
30599596--30599647
14
3.6
14
84
7
52
38
11
5
44
1.65
30599795--30599830
11
3.5
11
78
21
51
22
0
25
52
1.47
30599795--30599834
19
2.1
19
100
0
80
20
0
25
55
1.44
30600488--30600518
16
1.9
16
93
0
53
54
0
0
45
0.99
30601499--30601535
17
2.1
19
90
10
60
32
8
0
59
1.27
30601722--30601764
23
1.9
22
86
13
61
44
23
6
25
1.78
30604325--30604376
24
2.2
24
89
0
77
55
9
1
32
1.43
30612794--30612826
17
2.0
17
94
5
59
36
15
0
48
1.45
30617752--30617784
17
2.0
17
94
5
59
36
15
0
48
1.45
30618070--30618297
46
5.0
46
93
1
341
21
23
14
40
1.90
30622266--30622302
18
2.1
18
89
0
56
43
16
0
40
1.48
30623179--30623211
17
2.0
17
94
5
59
36
15
0
48
1.45
30625928--30626130
101
2.0
101
87
1
291
29
22
16
32
1.96
30628357--30628389
11
2.8
12
90
9
50
72
0
0
27
0.85
30628357--30628390
12
2.9
11
87
12
50
70
0
0
29
0.87
30629128--30629234
50
2.1
50
94
0
187
36
12
22
28
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30629213--30629254
20
2.1
20
100
0
84
45
9
28
16
1.79
30629161--30629304
70
2.0
71
90
1
227
38
13
22
25
1.90
30629300--30629417
31
3.8
31
81
0
137
29
16
24
28
1.97
30634007--30634049
22
1.9
23
85
4
61
25
4
0
69
1.07
30636858--30636902
23
2.0
23
86
0
63
4
22
2
71
1.15
30643489--30643547
30
2.0
30
93
0
100
57
10
5
27
1.52
30651407--30651439
16
2.0
17
94
5
59
51
0
6
42
1.26
30656543--30656581
19
2.1
19
100
0
78
35
5
20
38
1.75
30659945--30659972
12
2.3
12
100
0
56
32
0
28
39
1.57
30662298--30662361
32
2.0
32
96
0
119
39
21
23
15
1.92
30663684--30664023
49
7.0
48
74
6
200
35
16
25
22
1.95
30663728--30663995
99
2.7
97
77
7
238
34
16
25
23
1.95
30664713--30664749
9
4.1
9
92
0
65
45
13
10
29
1.77
30665336--30665509
86
2.0
86
95
0
312
37
7
6
48
1.57
30667061--30667108
25
1.9
25
82
0
60
29
8
16
45
1.76
30667509--30667536
6
4.7
6
100
0
56
85
0
0
14
0.59
30668109--30668158
15
3.5
15
81
10
52
64
0
0
36
0.94
30668675--30668702
3
9.3
3
100
0
56
64
0
0
35
0.94
30669966--30670030
21
3.2
21
71
20
75
40
3
15
41
1.63
30669962--30670043
39
2.1
39
100
0
164
37
2
14
45
1.58
30670614--30670754
70
2.0
70
97
0
264
43
2
4
48
1.37
30673389--30673425
16
2.4
16
86
8
51
48
8
8
35
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30674445--30674473
2
14.5
2
100
0
58
51
0
0
48
1.00
30675316--30675387
37
2.0
35
81
10
83
69
5
12
12
1.35
30676052--30676110
29
2.0
30
86
3
84
28
5
13
52
1.61
30679171--30679269
30
3.1
30
71
18
83
32
19
11
37
1.87
30679171--30679307
66
2.1
66
80
2
150
33
18
12
35
1.89
30681972--30682082
40
2.8
40
87
2
152
32
17
12
37
1.87
30682942--30682980
17
2.3
18
86
13
64
0
30
0
69
0.89
30683193--30683229
8
4.8
8
90
3
58
56
0
0
43
0.99
30686951--30686989
21
1.9
20
84
5
51
35
0
10
53
1.35
30688041--30688083
9
4.9
9
82
5
61
44
2
9
44
1.49
30690154--30690205
9
5.8
9
77
6
52
46
1
1
50
1.23
30690596--30690636
22
2.0
20
85
9
55
68
4
2
24
1.22
30693807--30693844
19
2.0
19
100
0
76
36
10
15
36
1.82
30695796--30695829
16
2.1
17
88
5
52
41
5
23
29
1.78
30697469--30697503
18
1.9
18
94
0
61
28
14
25
31
1.95
30703614--30703666
18
2.9
18
94
0
88
30
24
15
30
1.95
30704049--30704082
16
2.1
17
88
5
52
41
5
23
29
1.78
30706808--30706849
21
2.0
21
100
0
84
33
9
19
38
1.84
30707067--30707180
57
2.0
57
96
0
210
23
11
10
54
1.67
30718001--30718033
17
1.9
17
88
11
50
84
0
15
0
0.61
30718981--30719147
73
2.3
73
88
1
235
28
16
20
34
1.94
30719127--30719171
13
3.4
13
87
6
72
13
11
6
68
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30719058--30719340
97
2.9
100
86
4
396
24
16
19
39
1.92
30719357--30719731
147
2.5
148
90
1
581
30
17
20
32
1.95
30719358--30719731
73
5.0
74
86
2
509
30
17
20
32
1.95
30719633--30720089
92
5.0
91
80
8
454
28
16
17
37
1.92
30720770--30720868
30
3.3
30
89
0
162
26
48
6
19
1.72
30725816--30725849
16
2.1
17
88
5
52
41
5
23
29
1.78
30727491--30727525
18
1.9
18
94
0
61
28
14
25
31
1.95
30727701--30727736
18
1.9
19
88
5
56
38
0
16
44
1.48
30729584--30729614
10
3.1
10
90
0
53
38
0
9
51
1.35
30732023--30732074
9
5.8
9
77
6
52
46
1
1
50
1.23
30732304--30732341
17
2.3
17
86
4
51
23
0
0
76
0.79
30732274--30732331
29
1.9
31
83
13
77
25
1
5
67
1.21
30737842--30737888
24
2.0
24
100
0
94
34
4
31
29
1.77
30751017--30751061
11
4.3
10
83
10
63
71
2
0
26
0.98
30751017--30751081
11
6.2
10
72
15
51
72
3
1
23
1.07
30751155--30751180
7
3.7
7
100
0
52
15
0
0
84
0.62
30755730--30755828
3
32.7
3
85
6
119
67
0
32
0
0.91
30755737--30755806
24
2.9
24
97
0
131
72
0
27
0
0.84
30756882--30756909
11
2.5
11
100
0
56
35
0
7
57
1.26
30758522--30758551
6
5.0
6
100
0
60
33
33
33
0
1.58
30762839--30762864
3
8.7
3
100
0
52
65
0
0
34
0.93
30763477--30763514
17
2.1
19
90
9
62
0
23
0
76
0.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30765921--30766064
42
3.4
41
82
11
166
32
25
17
24
1.97
30767932--30767984
26
2.1
25
96
3
97
11
22
15
50
1.75
30771865--30771889
3
8.3
3
100
0
50
32
0
0
68
0.90
30771974--30772008
3
11.7
3
93
0
61
31
2
0
65
1.07
30772114--30772139
13
2.0
13
100
0
52
30
0
0
69
0.89
30778841--30778989
42
3.5
42
77
3
181
28
24
22
25
1.99
30778801--30779079
86
3.2
86
87
1
371
26
20
25
26
1.99
30778883--30779029
44
3.4
44
72
3
154
27
20
23
28
1.99
30779089--30779505
88
4.8
88
86
0
557
28
23
19
29
1.98
30781409--30781440
3
10.7
3
93
0
55
31
3
0
65
1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279