Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  136  of  279  ( 33431 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43942692--43942741
24
2.1
24
88
0
73
46
0
4
50
1.20
43946519--43946609
46
2.0
46
82
4
112
26
32
6
34
1.82
43946626--43946701
22
3.3
22
65
28
59
25
30
13
31
1.93
43946623--43946883
47
5.6
47
93
0
414
26
29
12
31
1.93
43946589--43946914
94
3.5
94
84
7
412
27
31
11
30
1.91
43946793--43946866
23
3.2
23
62
24
55
31
29
10
28
1.91
43946623--43946914
47
6.2
47
91
0
404
27
30
11
30
1.91
43950212--43950636
3
139.7
3
73
12
305
29
6
3
61
1.36
43950889--43950915
3
9.0
3
100
0
54
33
0
0
66
0.92
43950980--43951035
3
18.3
3
88
3
85
28
1
1
67
1.10
43954577--43954610
17
2.0
17
94
0
59
44
50
0
5
1.26
43959216--43959249
17
2.0
17
94
0
59
44
50
0
5
1.26
43963855--43963888
17
2.0
17
94
0
59
44
50
0
5
1.26
43972515--43972544
3
10.0
3
100
0
60
33
0
0
66
0.92
43972804--43972853
22
2.3
22
82
3
66
54
0
4
42
1.19
43972822--43972860
21
2.0
20
85
10
53
53
0
5
41
1.23
43978540--43978609
16
4.6
16
70
20
60
42
0
0
57
0.99
43978560--43978629
30
2.3
30
78
9
79
45
0
2
51
1.16
43984523--43984560
3
12.3
3
86
10
51
65
2
0
31
1.06
43986353--43986399
25
2.0
23
87
8
67
57
2
0
40
1.11
43986452--43986503
23
2.2
24
80
6
63
44
3
3
48
1.39
43988058--43988111
4
13.0
4
80
7
63
25
1
29
42
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43988061--43988109
12
3.9
12
91
5
71
26
2
30
40
1.67
43990912--43990971
22
2.7
23
73
19
63
66
6
0
26
1.16
43990921--43990954
4
8.0
4
90
9
50
73
2
0
23
0.97
43995835--43995876
21
2.0
21
81
9
50
69
4
2
23
1.20
43997487--43997735
50
4.8
50
84
4
275
20
29
24
25
1.99
43997486--43997735
100
2.4
104
87
6
348
20
29
24
25
1.99
43997830--43997861
13
2.5
13
94
0
55
56
12
0
31
1.37
43998073--43998130
30
1.9
30
85
0
80
31
22
3
43
1.70
44000371--44000423
23
2.4
22
76
20
56
9
18
1
69
1.25
44008714--44008814
38
2.5
41
71
12
102
23
19
28
27
1.99
44008716--44008850
39
3.4
39
76
8
123
24
20
27
27
1.99
44013840--44013879
20
2.0
20
95
0
71
50
0
2
47
1.14
44016078--44016102
6
4.2
6
100
0
50
48
0
0
52
1.00
44035562--44035635
37
2.0
37
97
0
139
33
8
20
37
1.82
44039685--44039731
23
2.0
23
92
8
78
10
6
40
42
1.65
44040679--44040757
40
2.0
40
84
2
104
24
16
27
31
1.96
44040742--44040818
28
2.8
28
89
0
118
31
12
27
28
1.93
44045727--44046009
27
10.5
27
88
1
415
27
22
8
40
1.84
44045700--44046061
81
4.5
81
84
2
413
31
22
8
38
1.83
44045916--44046299
27
14.2
27
81
1
275
35
20
9
34
1.85
44045997--44046410
54
7.6
54
74
9
261
37
20
9
32
1.85
44046011--44046325
81
3.9
81
80
4
339
38
19
9
32
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44046021--44046353
27
12.3
28
80
5
249
38
20
9
31
1.85
44046174--44046407
27
8.6
28
77
8
110
38
21
8
30
1.84
44046392--44046558
27
6.2
27
89
1
219
33
16
21
28
1.95
44046390--44046558
81
2.1
81
86
2
241
34
15
21
28
1.94
44046765--44046858
25
3.8
25
91
2
145
27
25
21
25
1.99
44047079--44047160
29
2.7
30
74
9
87
32
21
21
23
1.98
44050196--44050282
42
2.1
42
95
0
156
28
18
25
27
1.98
44050756--44050820
23
3.0
23
80
11
82
35
23
23
18
1.96
44051008--44051041
16
2.1
17
88
5
52
35
26
0
38
1.57
44053641--44053674
17
2.1
16
88
5
50
35
14
11
38
1.83
44058594--44058634
18
2.3
18
87
8
57
48
0
21
29
1.50
44059120--44059157
20
1.9
20
84
10
51
47
0
10
42
1.38
44059341--44059380
16
2.3
19
79
12
50
40
2
7
50
1.44
44060182--44060238
29
2.0
29
92
0
96
31
31
12
24
1.92
44061262--44061312
14
3.8
14
90
10
72
39
3
7
49
1.51
44061375--44061546
86
2.0
86
96
0
317
43
11
19
26
1.84
44061731--44061765
4
9.2
4
87
12
56
74
0
25
0
0.82
44068539--44068589
14
3.8
14
90
10
72
39
3
7
49
1.51
44078264--44078298
17
2.0
18
88
5
54
42
11
0
45
1.40
44078746--44078828
41
2.0
41
95
0
148
30
22
9
37
1.86
44107308--44107340
2
16.5
2
100
0
66
51
0
48
0
1.00
44108144--44108170
13
2.1
13
100
0
54
29
14
14
40
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44114220--44114248
13
2.1
14
93
6
51
41
0
0
58
0.98
44118499--44118536
19
2.0
19
94
0
67
50
13
10
26
1.73
44120655--44120731
31
2.5
31
91
0
118
35
14
15
35
1.88
44122298--44122346
3
16.3
3
100
0
98
32
0
0
67
0.91
44129487--44129767
112
2.5
112
100
0
562
37
16
15
29
1.90
44132109--44132197
45
2.0
45
100
0
178
35
6
13
43
1.70
44135195--44135246
25
2.1
25
100
0
104
25
23
15
36
1.93
44141470--44141499
5
5.8
5
96
4
51
80
0
20
0
0.72
44143321--44143388
27
2.5
27
73
15
68
54
13
2
29
1.53
44149999--44150128
61
2.1
64
80
12
164
37
7
4
50
1.52
44150130--44150159
12
2.5
12
94
0
51
53
13
0
33
1.40
44153033--44153098
25
3.2
20
73
22
64
71
4
0
24
1.05
44153039--44153096
19
3.1
19
79
16
50
75
5
0
18
0.98
44153021--44153072
20
2.6
18
82
17
59
73
5
1
19
1.14
44153045--44153096
25
2.1
25
96
3
97
75
5
0
19
1.01
44154747--44154780
17
2.0
17
94
0
59
44
50
0
5
1.26
44158394--44158427
17
2.0
17
94
0
59
44
50
0
5
1.26
44165992--44166033
22
2.0
20
90
9
66
61
0
0
38
0.96
44165995--44166040
16
2.9
16
83
0
56
60
0
0
39
0.97
44165991--44166051
22
2.6
22
80
19
63
60
0
0
39
0.97
44165992--44166047
20
2.7
20
81
10
60
62
0
0
37
0.95
44171174--44171212
17
2.2
18
86
4
53
28
0
5
66
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44171766--44171830
31
2.1
32
83
13
82
49
0
1
49
1.10
44182837--44182898
19
3.2
19
90
6
90
51
4
0
43
1.23
44182869--44182922
26
2.1
25
86
3
72
50
5
0
44
1.25
44182881--44182930
25
2.0
26
84
4
66
50
4
0
46
1.20
44196765--44196789
11
2.3
11
100
0
50
8
28
0
64
1.22
44199092--44199125
6
5.7
6
85
0
50
17
17
14
50
1.79
44199336--44199496
18
8.5
18
68
14
74
34
10
14
40
1.80
44199410--44199492
36
2.3
36
82
0
94
40
8
12
38
1.73
44203316--44203375
29
2.0
30
87
3
86
53
8
3
35
1.48
44217142--44217174
16
2.1
16
100
0
66
24
21
6
48
1.72
44218850--44218885
6
6.0
6
100
0
72
33
33
0
33
1.58
44229824--44229883
26
2.3
26
81
13
63
41
31
1
25
1.65
44230617--44230659
23
1.9
22
85
4
59
37
2
0
60
1.10
44244642--44244669
8
3.5
8
100
0
56
0
10
0
89
0.49
44246503--44246542
21
2.0
21
85
5
55
35
5
0
60
1.19
44246495--44246546
20
2.7
18
75
13
50
38
3
1
55
1.29
44246531--44246581
20
2.6
21
84
9
63
58
0
0
41
0.98
44248004--44248041
17
2.1
18
85
9
51
65
5
13
15
1.43
44250726--44250774
25
2.0
25
84
4
64
6
20
2
71
1.18
44252318--44252359
18
2.3
18
84
8
50
59
11
4
23
1.51
44252378--44252560
3
60.7
3
69
13
92
63
2
2
31
1.22
44252378--44252560
23
7.2
24
66
19
77
63
2
2
31
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44252395--44252433
14
2.7
15
88
4
62
76
0
0
23
0.78
44252381--44252428
20
2.4
21
86
6
64
70
0
0
29
0.87
44252440--44252560
14
9.5
13
68
25
64
62
3
3
30
1.27
44252477--44252525
20
2.5
18
81
15
53
63
2
6
28
1.30
44252793--44252850
17
3.6
17
71
17
61
18
0
48
32
1.49
44252797--44252861
30
2.2
30
88
0
94
18
0
47
33
1.49
44254229--44254269
21
2.0
21
95
0
73
24
21
29
24
1.99
44254511--44254557
15
3.2
15
84
3
51
55
2
36
6
1.37
44255525--44255562
20
1.9
20
84
10
51
42
13
23
21
1.88
44257462--44257643
46
4.0
46
89
1
240
40
14
23
21
1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279