genome.fa.s8.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  155  of  279  ( 33431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50643923--50644008	40	2.2	40	97	0	163	23	15	12	48	1.79
50662311--50662373	33	1.9	33	83	0	81	39	7	9	42	1.67
50668251--50668369	60	2.0	60	89	0	184	26	42	13	16	1.86
50671326--50671385	24	2.5	24	79	15	61	33	3	3	60	1.30
50674670--50674740	35	2.0	35	100	0	142	33	9	25	30	1.88
50675345--50675397	21	2.7	20	82	8	56	35	0	5	58	1.22
50675387--50675421	11	3.2	11	91	0	61	25	2	0	71	1.00
50675368--50675413	19	2.3	19	85	7	56	28	2	4	65	1.23
50677505--50677733	46	5.0	46	86	0	296	43	13	19	24	1.87
50677658--50677723	24	2.9	22	66	16	62	46	12	21	19	1.82
50677519--50677800	46	6.2	46	82	3	187	45	14	17	22	1.85
50677507--50677767	138	1.9	138	85	1	362	45	13	18	22	1.84
50692828--50692966	68	2.0	68	98	0	269	48	5	3	41	1.44
50693897--50694041	72	2.0	70	100	0	254	53	2	2	40	1.29
50695618--50695681	28	2.3	28	94	0	110	59	3	9	28	1.44
50706418--50706498	40	2.0	40	97	0	153	17	25	12	44	1.84
50707737--50707799	23	2.8	21	72	23	56	25	9	0	65	1.23
50707745--50707805	26	2.5	24	84	7	70	29	9	0	60	1.29
50712910--50712948	9	4.2	9	86	3	51	33	12	12	41	1.82
50713514--50713553	18	2.2	18	86	8	55	82	2	12	2	0.87
50713514--50713559	14	3.4	14	85	8	51	82	4	10	2	0.89
50713528--50713570	23	1.9	22	85	4	59	83	9	4	2	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50715162--50715285	64	2.0	63	90	1	194	29	16	16	37	1.92
50715490--50715812	44	7.3	44	65	12	158	32	22	24	20	1.98
50715489--50715831	87	3.9	88	86	3	474	32	21	24	20	1.98
50716235--50716286	17	3.3	17	74	20	58	32	55	0	11	1.36
50716222--50716286	30	2.2	30	94	0	112	33	53	0	12	1.38
50716207--50716275	13	5.0	13	80	13	66	36	50	0	13	1.41
50718108--50718145	20	1.9	20	88	0	58	34	7	0	57	1.28
50718078--50718149	26	2.8	25	75	12	67	27	8	0	63	1.23
50718358--50718486	37	3.8	36	70	19	114	24	8	1	65	1.30
50718341--50718470	64	2.0	64	97	2	244	22	7	1	68	1.23
50718967--50719012	23	2.0	23	84	12	60	45	10	6	36	1.65
50718974--50719018	23	2.0	23	82	8	56	40	13	8	37	1.76
50726738--50726783	23	2.0	23	84	12	60	45	10	6	36	1.65
50726745--50726789	23	2.0	23	82	8	56	40	13	8	37	1.76
50730575--50730686	59	1.9	59	85	3	154	38	8	10	42	1.69
50730573--50730702	59	2.2	59	81	10	149	42	6	10	40	1.67
50734795--50734943	74	2.0	74	97	0	280	35	6	13	44	1.70
50738278--50739088	46	17.6	46	95	2	1468	30	30	19	19	1.96
50742192--50742301	39	2.9	38	87	4	170	14	26	21	37	1.92
50749142--50749176	3	11.7	3	93	0	61	71	0	28	0	0.86
50749540--50749589	16	3.2	15	77	8	55	28	0	14	58	1.37
50754690--50754730	2	20.5	2	100	0	82	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50767375--50767439	21	3.1	21	73	16	64	55	3	4	36	1.36
50797109--50797133	2	12.5	2	100	0	50	52	0	48	0	1.00
50798737--50798775	19	2.1	19	100	0	78	53	25	0	20	1.45
50807136--50807170	17	2.1	17	100	0	70	45	5	0	48	1.26
50809716--50809761	17	2.9	16	78	12	51	52	4	0	43	1.21
50809761--50809829	16	4.1	16	71	20	52	63	0	2	33	1.09
50812494--50812613	38	3.1	38	89	2	168	23	21	25	30	1.99
50836364--50836394	7	4.4	7	91	0	53	25	3	0	70	1.02
50836636--50836687	15	3.1	15	75	20	50	61	0	1	36	1.07
50842736--50842767	15	2.1	15	100	0	64	43	18	25	12	1.85
50849173--50849239	21	3.1	21	77	8	80	37	22	20	19	1.95
50849173--50849238	23	3.0	22	78	6	80	37	22	21	18	1.94
50849611--50849664	15	3.5	15	87	2	81	51	11	0	37	1.37
50854650--50854676	11	2.5	11	100	0	54	22	7	18	51	1.70
50857482--50857527	23	2.0	23	87	4	67	45	8	6	39	1.61
50857489--50857533	23	2.0	23	86	0	63	40	11	8	40	1.72
50859162--50859317	42	3.7	41	75	17	158	24	18	26	30	1.98
50863836--50863962	42	3.0	42	86	6	170	29	26	14	29	1.95
50864069--50864217	31	4.8	31	91	0	226	26	26	19	26	1.99
50864193--50864321	50	2.5	51	87	5	181	27	22	13	35	1.92
50867476--50867576	41	2.5	41	90	0	166	17	21	23	36	1.95
50870736--50870857	42	3.0	43	80	11	132	28	25	13	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50871014--50871129	31	3.7	31	91	4	198	27	28	18	25	1.98
50875839--50875864	11	2.4	11	100	0	52	23	0	30	46	1.53
50877933--50878051	57	2.1	56	95	1	211	50	6	18	24	1.71
50878556--50878659	39	2.7	39	92	0	163	13	22	24	40	1.89
50880296--50880329	11	3.1	11	86	0	50	70	14	2	11	1.27
50881713--50881991	121	2.3	120	89	3	420	46	7	12	34	1.69
50903921--50903963	22	2.0	22	86	9	61	55	2	0	41	1.12
50911775--50911812	18	2.1	19	85	5	51	44	2	2	50	1.30
50917021--50917095	37	2.0	37	100	0	150	36	21	5	37	1.76
50923704--50923761	29	2.0	29	96	0	107	43	13	17	25	1.86
50941804--50941834	5	6.2	5	92	0	53	41	0	0	58	0.98
50943517--50943595	22	3.4	22	69	17	70	78	2	10	8	1.05
50943513--50943596	26	3.4	26	74	12	104	79	2	9	8	1.01
50943491--50943597	48	2.2	49	94	1	189	75	3	9	11	1.15
50945477--50945758	150	1.9	150	99	0	555	45	14	10	29	1.78
50945799--50945834	18	2.0	18	94	0	63	58	27	8	5	1.50
50945818--50946117	41	7.4	41	87	1	433	35	25	21	18	1.96
50945818--50946117	81	3.7	82	87	1	433	35	25	21	18	1.96
50945818--50946117	122	2.5	123	90	1	469	35	25	21	18	1.96
50948503--50948611	54	2.0	54	98	0	209	44	17	5	33	1.72
50958106--50958157	26	2.0	26	96	0	95	34	11	21	32	1.89
50961751--50961799	24	2.0	24	96	0	89	28	18	16	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50966148--50966176	13	2.2	13	100	0	58	48	13	31	6	1.69
50971739--50971852	56	2.0	57	96	1	212	33	13	12	41	1.81
50972796--50972821	4	6.5	4	100	0	52	23	0	0	76	0.78
50974595--50974626	9	3.4	9	95	4	55	12	53	0	34	1.39
50979839--50980066	46	5.0	46	85	3	271	41	14	23	21	1.89
50992034--50992080	20	2.3	21	85	7	62	65	2	2	29	1.15
50996019--50996130	39	2.8	40	76	8	113	30	25	20	23	1.98
50997693--50997728	5	7.0	5	93	6	63	61	0	0	38	0.96
51004093--51004171	41	2.0	41	87	7	119	40	25	8	25	1.84
51004585--51004677	39	2.5	37	80	7	98	27	29	22	20	1.98
51005030--51005072	3	14.7	3	80	4	52	60	4	0	34	1.17
51005767--51005800	17	2.1	16	88	5	50	2	14	5	76	1.09
51005789--51005839	14	3.6	14	76	7	50	17	13	0	68	1.21
51005989--51006025	14	2.4	17	86	13	53	51	0	0	48	1.00
51012734--51012792	25	2.4	25	85	0	73	25	27	20	27	1.99
51020560--51020606	21	2.2	22	92	3	78	21	38	19	21	1.94
51027839--51027912	38	1.9	38	94	0	130	51	12	10	25	1.71
51031497--51031544	24	2.0	24	83	4	60	31	6	0	62	1.20
51032193--51032228	5	7.4	5	93	6	65	41	0	0	58	0.98
51052248--51052336	1	89.0	1	93	0	151	2	96	1	0	0.24
51060462--51060487	12	2.2	12	100	0	52	23	7	26	42	1.81
51068707--51068735	4	7.2	4	100	0	58	24	0	0	75	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51073711--51073768	29	2.0	29	100	0	116	27	13	17	41	1.87
51075361--51075400	21	1.9	21	84	0	53	17	70	7	5	1.30
51080493--51080540	11	4.5	11	86	5	71	18	45	6	29	1.74
51081078--51081166	18	4.9	18	90	0	133	26	22	16	33	1.96
51082008--51082036	11	2.6	11	100	0	58	24	17	37	20	1.93
51088831--51088863	16	2.1	16	100	0	66	21	24	0	54	1.45
51093629--51093654	2	13.0	2	100	0	52	50	0	50	0	1.00
51098626--51098667	18	2.2	20	83	8	52	52	7	9	30	1.61
51104121--51104176	23	2.4	23	100	0	112	14	25	32	28	1.94
51105113--51105156	18	2.5	17	85	3	61	63	0	0	36	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279