genome.fa.s8.2.7.7.80.10.50.1000.197.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  197  of  279  ( 33431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64605496--64605602	37	2.9	37	83	4	135	47	14	20	17	1.82
64605508--64605611	31	3.4	31	69	15	97	47	14	20	18	1.83
64605544--64605611	25	2.7	25	79	0	82	47	14	19	19	1.83
64605873--64605928	22	2.5	22	77	11	69	33	16	25	25	1.95
64606435--64606549	27	4.3	27	78	8	126	27	20	14	36	1.92
64606437--64606549	54	2.1	53	88	4	172	27	21	15	36	1.93
64608608--64608720	6	18.3	6	67	18	63	48	15	18	17	1.81
64608629--64608720	25	3.7	25	85	0	130	47	15	19	17	1.82
64608982--64609037	22	2.5	22	75	16	62	35	19	25	19	1.95
64609551--64609657	27	4.0	27	82	0	124	26	20	18	34	1.96
64609555--64609657	54	1.9	53	88	2	152	26	21	17	34	1.95
64614287--64614318	16	2.0	16	93	0	55	25	3	18	53	1.59
64617431--64617459	3	9.7	3	100	0	58	31	0	0	68	0.89
64621077--64621114	3	12.7	3	100	0	76	31	0	0	68	0.90
64624345--64624383	21	2.0	21	90	10	64	30	0	5	64	1.15
64624352--64624415	20	3.2	20	82	4	76	31	0	6	62	1.20
64624359--64624414	21	2.9	19	80	17	62	33	0	3	62	1.12
64639240--64639286	24	2.0	24	87	4	69	59	0	0	40	0.97
64667382--64667423	16	2.6	17	85	11	61	47	2	21	28	1.63
64667397--64667432	16	2.2	16	90	0	54	41	5	22	30	1.76
64676166--64676225	27	2.3	26	83	13	70	56	1	3	38	1.26
64676647--64676713	28	2.4	28	82	7	73	58	0	2	38	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64676915--64677147	9	25.0	9	66	22	56	31	4	1	62	1.24
64676915--64677101	10	19.2	10	67	17	65	31	4	2	61	1.29
64676920--64676989	19	3.6	19	70	16	54	28	5	4	61	1.38
64676958--64677057	28	3.5	28	77	5	110	31	6	3	60	1.36
64676915--64676999	38	2.3	37	78	11	93	30	4	3	61	1.33
64676942--64677058	58	2.0	59	89	3	182	29	5	2	61	1.33
64677034--64677100	21	3.2	21	77	6	66	34	1	0	64	1.03
64677056--64677112	29	2.0	29	83	13	73	35	1	0	63	1.05
64677096--64677146	16	3.2	16	78	8	52	29	1	0	68	1.00
64677096--64677140	16	2.8	16	83	10	65	31	0	0	68	0.89
64684496--64684533	18	2.0	20	85	10	53	31	21	26	21	1.98
64693640--64693840	100	2.0	100	98	0	384	52	15	13	18	1.75
64695835--64695861	6	4.5	6	100	0	54	18	51	14	14	1.76
64696692--64696771	29	2.8	28	79	3	106	31	12	17	38	1.87
64697325--64697479	62	2.5	62	84	6	181	45	13	12	28	1.79
64697496--64697553	27	2.2	27	81	9	66	48	31	0	20	1.50
64697556--64697584	13	2.2	13	100	0	58	48	6	6	37	1.57
64703014--64703073	18	3.3	17	86	9	66	73	1	1	23	1.01
64705945--64706106	81	2.0	81	97	0	306	38	7	19	34	1.80
64712471--64712590	51	2.4	51	86	0	168	38	11	22	27	1.89
64718492--64718580	45	2.0	45	84	8	119	38	19	20	22	1.94
64718494--64718604	45	2.4	45	79	8	109	37	19	18	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64718791--64718876	34	2.5	34	82	3	91	43	13	10	32	1.79
64719837--64719871	17	2.2	16	90	10	54	74	0	14	11	1.08
64722175--64722227	27	2.0	27	96	0	97	35	20	11	32	1.88
64723652--64723855	66	3.0	64	67	21	153	40	0	5	51	1.32
64723727--64723780	18	3.0	17	79	12	63	42	0	0	55	1.00
64723729--64723781	19	2.9	18	88	5	88	39	0	0	58	0.98
64723608--64723903	139	2.1	140	90	4	463	42	0	4	52	1.26
64724125--64724192	16	4.2	16	98	0	127	38	35	0	26	1.57
64729401--64729427	14	1.9	14	100	0	54	22	7	0	70	1.12
64729457--64729522	7	8.1	8	75	18	57	22	3	0	74	0.96
64729457--64729490	17	1.9	18	88	5	52	23	2	0	73	0.97
64729463--64729522	8	7.4	8	72	10	50	21	1	0	76	0.87
64730498--64730544	21	2.1	22	84	7	60	48	0	4	46	1.21
64730772--64730811	20	2.0	21	90	9	66	75	0	25	0	0.81
64732530--64732574	23	2.0	23	86	0	63	15	28	24	31	1.96
64733731--64733990	138	1.9	138	94	0	457	33	12	17	36	1.87
64735522--64735579	30	1.9	30	92	0	98	20	39	24	15	1.91
64738164--64738202	20	1.9	21	89	5	62	43	10	5	41	1.61
64751903--64751995	45	2.0	46	91	2	152	29	24	17	29	1.97
64752825--64753319	46	10.8	46	89	3	669	21	23	13	41	1.89
64755281--64755310	11	2.6	11	94	5	51	73	0	0	26	0.84
64756889--64756974	26	3.3	26	74	9	77	29	34	13	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64756902--64756980	26	3.0	26	74	7	79	34	35	11	18	1.87
64758002--64758039	19	2.0	19	85	10	51	44	2	13	39	1.57
64759951--64760006	29	2.0	29	89	10	89	67	5	3	23	1.27
64760864--64760916	28	1.9	28	85	11	74	24	9	3	62	1.42
64762366--64762466	42	2.4	42	81	6	105	31	15	21	30	1.95
64769923--64770036	42	2.7	43	79	4	124	28	21	25	24	1.99
64772911--64773024	42	2.7	43	79	4	124	28	21	25	24	1.99
64778133--64778231	3	33.0	3	70	20	57	31	3	3	62	1.25
64778432--64778493	23	2.6	24	76	19	67	32	6	4	56	1.46
64778487--64778524	19	2.0	19	94	0	67	31	13	5	50	1.63
64778899--64778954	27	2.1	28	83	6	71	28	7	3	60	1.40
64784867--64784945	27	2.9	27	76	14	99	32	18	25	22	1.97
64793791--64793949	27	5.9	27	79	11	157	34	20	25	20	1.96
64793809--64793949	54	2.6	54	86	2	203	34	21	24	19	1.96
64795547--64795654	26	4.2	26	96	0	198	36	25	7	31	1.83
64810042--64810146	27	3.9	26	87	5	138	19	23	21	35	1.96
64817282--64817365	43	1.9	44	90	2	134	46	13	23	16	1.82
64818298--64818329	14	2.3	14	94	0	55	15	9	6	68	1.36
64818312--64818626	73	4.2	74	90	3	474	27	16	20	35	1.94
64818609--64818642	16	2.1	16	94	0	59	20	8	0	70	1.13
64818609--64818645	14	2.4	16	86	8	51	24	10	0	64	1.25
64818705--64818740	14	2.7	13	83	8	54	30	13	8	47	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64818550--64818809	88	2.9	92	80	9	270	28	15	19	36	1.92
64818649--64818859	88	2.4	87	82	6	230	28	15	22	34	1.94
64820800--64820837	19	2.0	19	89	0	58	31	15	5	47	1.68
64836549--64836687	42	3.3	42	92	2	226	27	26	15	30	1.96
64837919--64838064	53	2.7	53	89	4	204	29	27	15	27	1.96
64840850--64841021	93	1.8	93	94	0	308	27	29	22	20	1.98
64840843--64841018	46	3.8	46	79	12	207	28	29	21	20	1.98
64840892--64841030	47	3.0	46	75	16	144	29	28	19	22	1.98
64854546--64854600	22	2.7	20	75	8	56	36	7	0	56	1.27
64855048--64855074	11	2.5	11	100	0	54	48	0	0	51	1.00
64863073--64863189	57	2.1	57	98	0	225	31	11	22	34	1.90
64867320--64867346	3	9.0	3	100	0	54	66	0	0	33	0.92
64878194--64878218	3	8.3	3	100	0	50	36	0	0	64	0.94
64878901--64878925	6	4.2	6	100	0	50	32	52	0	16	1.44
64878981--64879098	51	2.3	51	91	2	184	22	42	15	19	1.89
64878981--64879124	51	2.8	51	86	4	148	23	44	13	18	1.85
64882719--64882752	10	3.3	10	92	8	59	8	17	8	64	1.47
64882719--64882752	11	3.2	11	95	4	61	8	17	8	64	1.47
64884644--64884734	38	2.4	38	82	7	105	60	3	2	34	1.25
64884761--64884797	18	2.1	18	89	0	56	5	67	0	27	1.12
64888188--64888351	46	3.4	45	79	16	118	36	12	22	28	1.91
64888143--64888351	52	4.1	51	84	9	257	35	12	22	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64888129--64888351	98	2.3	98	79	9	233	35	13	22	28	1.92
64888315--64888460	37	4.0	37	91	1	233	36	16	22	24	1.94
64899466--64899674	90	2.3	90	89	0	310	30	19	22	28	1.98
64899646--64900100	45	10.2	44	67	13	198	29	20	23	27	1.99
64899556--64900232	135	5.0	135	90	1	943	29	20	23	27	1.98
64900061--64900393	177	1.9	177	80	2	391	30	18	23	27	1.97
64900369--64900658	85	3.4	86	91	4	473	30	23	25	20	1.99
64900942--64900977	18	2.0	18	94	0	63	25	58	0	16	1.38
64901255--64901394	63	2.3	63	81	8	164	25	4	5	64	1.34
64901369--64901405	19	2.0	18	94	5	65	32	0	0	67	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279