Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  163  of  279  ( 33431 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53780669--53780744
37
2.1
37
100
0
152
15
5
25
53
1.62
53785644--53785673
15
2.0
15
100
0
60
33
40
13
13
1.83
53801134--53801202
34
2.0
34
100
0
138
34
17
24
23
1.96
53802071--53802113
22
1.9
23
85
4
61
37
9
0
53
1.33
53806563--53806601
18
2.2
17
86
13
53
33
0
20
46
1.51
53806828--53806901
23
3.3
23
86
3
114
18
21
27
32
1.97
53806829--53806894
22
3.0
22
90
2
105
18
22
27
31
1.97
53809070--53809137
18
3.7
19
80
5
77
47
14
7
30
1.72
53809504--53809537
16
2.1
16
89
10
52
35
8
0
55
1.31
53810400--53810437
15
2.5
15
91
4
58
0
31
0
68
0.90
53820869--53820935
29
2.3
29
92
0
116
31
11
22
34
1.90
53821149--53821201
6
8.5
6
87
8
61
75
5
0
18
0.99
53824264--53824337
14
5.1
16
72
20
65
59
0
0
40
0.97
53824254--53824337
42
2.0
44
86
6
120
57
0
1
41
1.06
53824285--53824381
48
2.0
48
84
7
126
56
0
0
43
0.99
53832213--53832247
17
2.1
18
89
10
56
48
0
0
51
1.00
53832877--53832920
20
2.2
20
83
0
52
25
2
4
68
1.20
53834562--53834609
25
1.9
25
83
8
62
35
4
2
58
1.29
53843493--53843573
41
2.0
41
83
9
103
39
0
14
45
1.45
53845311--53845342
10
3.2
10
100
0
64
34
9
28
28
1.88
53846122--53846395
46
6.0
46
90
0
370
20
24
15
40
1.91
53846127--53846395
138
1.9
138
89
0
412
20
24
15
40
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53848559--53848595
20
1.9
20
88
5
58
51
8
0
40
1.32
53853717--53853750
16
2.1
16
94
0
59
47
0
2
50
1.16
53853742--53853785
22
2.0
22
83
12
56
75
4
4
15
1.14
53854973--53855036
31
2.1
31
93
0
110
29
12
25
32
1.92
53856601--53856710
51
2.2
51
96
0
202
32
14
23
29
1.94
53870776--53870804
12
2.3
13
94
5
51
20
3
0
75
0.94
53885592--53885622
6
5.2
6
96
0
53
19
12
16
51
1.76
53903117--53903147
6
5.2
6
96
0
53
19
12
16
51
1.76
53907503--53907568
35
1.9
33
87
6
96
45
10
7
36
1.67
53920364--53920410
20
2.4
19
79
10
58
31
0
6
61
1.21
53923962--53924014
27
2.0
27
100
0
106
64
3
22
9
1.40
53934609--53934641
11
2.9
12
86
13
52
33
0
0
66
0.92
53934762--53934819
30
1.9
30
92
0
98
56
10
8
24
1.60
53943193--53943223
12
2.6
12
94
0
53
0
25
0
74
0.82
53943303--53943333
16
1.9
16
93
0
53
54
3
0
41
1.16
53945509--53945617
54
2.0
54
94
0
191
23
25
16
33
1.96
53951535--53951569
15
2.3
15
100
0
70
25
37
11
25
1.90
53954630--53954673
21
2.0
23
86
8
65
56
2
4
36
1.32
53954630--53954673
23
2.0
21
82
8
52
56
2
4
36
1.32
53956218--53956364
39
3.8
39
82
0
186
40
11
11
36
1.78
53956231--53956294
18
3.4
18
69
12
56
43
4
12
39
1.63
53956218--53956368
78
1.9
78
90
0
239
39
11
11
37
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53958590--53958805
111
1.9
111
97
1
407
42
7
17
32
1.78
53966462--53966637
46
3.8
46
80
12
225
21
21
28
28
1.98
53966459--53966629
93
1.8
93
96
0
315
21
21
29
28
1.98
53969562--53969641
15
5.4
15
75
12
76
12
17
12
57
1.65
53969553--53969632
30
2.6
31
81
11
94
13
17
13
55
1.70
53979249--53979452
41
5.0
41
86
5
259
32
20
25
21
1.97
53979242--53979456
83
2.6
83
85
4
274
33
20
24
21
1.97
53979693--53979743
15
3.5
15
75
17
54
23
1
27
47
1.63
53980340--53980386
14
3.4
14
84
0
67
72
0
0
27
0.85
53980339--53980399
15
4.1
15
77
8
63
70
1
0
27
0.97
53980339--53980399
7
8.3
7
80
10
59
70
1
0
27
0.97
53981691--53981756
27
2.4
27
90
5
98
43
34
3
18
1.65
53982209--53982251
12
3.5
12
78
6
50
51
2
2
44
1.27
53982566--53982595
15
2.0
15
93
0
51
36
20
3
40
1.69
53982781--53982817
19
1.9
19
88
0
56
27
5
0
67
1.12
53982790--53982820
14
2.1
14
94
5
53
25
3
0
70
1.02
53983280--53983333
15
3.6
14
79
16
56
46
5
0
48
1.25
53991273--53991302
5
6.0
5
100
0
60
60
20
0
20
1.37
54003125--54003172
18
2.6
19
83
6
62
58
10
0
31
1.32
54010767--54010806
13
3.0
13
82
17
55
42
12
7
37
1.71
54013108--54013158
26
2.0
25
85
11
68
64
5
0
29
1.17
54013121--54013184
21
3.1
21
72
14
53
68
6
0
25
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54013234--54013266
15
2.1
16
88
11
50
69
0
0
30
0.88
54013767--54013817
9
5.0
10
76
19
52
66
3
1
27
1.20
54014587--54014635
24
2.1
23
84
3
62
34
2
0
63
1.06
54014798--54014858
32
1.9
32
86
6
88
42
6
16
34
1.74
54017637--54017695
30
2.0
30
100
0
118
27
16
11
44
1.83
54059454--54059513
26
2.3
27
80
11
70
55
0
3
41
1.16
54059462--54059520
26
2.3
26
80
13
79
54
0
3
42
1.17
54061307--54061455
36
4.1
37
91
1
221
28
16
10
44
1.80
54063972--54064022
5
10.2
5
95
0
93
19
39
1
39
1.63
54066113--54066178
2
33.0
2
81
0
69
1
54
0
43
1.09
54066114--54066172
12
4.9
12
89
0
82
0
57
0
42
0.98
54066247--54066394
10
14.7
10
75
16
119
2
56
0
40
1.13
54066246--54066394
2
77.0
2
72
9
103
2
56
0
40
1.13
54066590--54066915
12
27.3
12
70
19
105
2
56
0
41
1.11
54066591--54066915
18
18.5
18
68
17
87
2
56
0
41
1.11
54066590--54066657
4
17.0
4
75
0
55
2
54
0
42
1.15
54066622--54066913
16
18.2
16
69
16
167
1
56
0
41
1.09
54066623--54066698
4
18.0
4
76
10
62
0
63
0
36
0.95
54066590--54066915
30
10.2
30
66
22
114
2
56
0
41
1.11
54066717--54066915
6
32.8
6
72
12
68
1
54
0
43
1.09
54066777--54066915
2
71.5
2
78
5
133
0
51
0
48
1.05
54069424--54069563
46
3.0
47
86
6
180
22
23
13
40
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54071725--54071761
20
1.9
20
88
5
58
51
8
0
40
1.32
54074416--54074689
46
6.0
46
90
0
379
20
24
14
40
1.90
54074421--54074689
138
1.9
138
90
0
421
20
24
14
40
1.90
54078408--54079141
367
2.0
367
100
0
1468
38
4
19
37
1.73
54079099--54079914
406
2.0
407
98
0
1571
42
9
18
30
1.81
54088446--54088505
30
2.0
30
100
0
120
16
26
36
20
1.93
54091478--54091553
35
2.1
35
85
7
100
48
7
9
34
1.64
54092839--54092880
18
2.3
18
80
8
50
47
4
2
45
1.36
54104276--54104315
11
3.6
11
82
0
53
60
10
12
17
1.59
54107928--54108110
95
1.9
95
87
2
269
43
6
13
37
1.68
54111684--54111715
15
2.1
15
94
0
55
31
3
31
34
1.73
54113505--54113571
24
3.0
23
89
8
102
38
41
7
11
1.70
54113512--54113577
24
2.8
24
95
2
116
42
40
7
9
1.65
54114536--54114604
21
3.4
20
73
16
70
55
5
1
37
1.33
54115898--54119001
791
3.9
793
84
3
3850
29
18
21
30
1.97
54119605--54119631
14
1.9
14
100
0
54
40
0
0
59
0.98
54124933--54125082
46
3.3
46
89
0
228
18
22
13
45
1.84
54128760--54128784
7
3.6
7
100
0
50
0
0
32
68
0.90
54136801--54136880
25
3.3
25
72
13
69
67
3
0
28
1.08
54136813--54136862
25
2.0
25
88
4
73
62
4
0
34
1.14
54136836--54136903
12
6.0
12
78
11
63
64
7
0
27
1.20
54136842--54136903
33
1.9
32
86
3
88
67
8
0
24
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54136941--54136974
9
3.8
9
88
0
50
73
0
0
26
0.83
54137612--54137650
12
3.4
11
86
10
51
41
0
0
58
0.98
54138113--54138175
32
2.0
32
96
3
119
55
6
15
22
1.63
54138765--54138807
22
1.9
23
85
4
61
76
0
0
23
0.78
54153756--54153796
4
10.2
4
100
0
82
26
0
48
24
1.51
54159191--54159225
12
2.9
12
91
0
52
57
17
17
8
1.64
54168136--54168165
14
2.1
14
100
0
60
50
0
40
10
1.36
54168729--54168782
24
2.2
25
86
3
74
44
7
3
44
1.49
54178978--54179025
24
2.0
24
100
0
96
29
12
4
54
1.56
54183119--54183144
13
2.0
13
100
0
52
76
7
7
7
1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279