genome.fa.s8.2.7.7.80.10.50.1000.205.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  205  of  279  ( 33431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66993036--66993067	16	2.0	16	100	0	64	25	12	12	50	1.75
66994715--66994744	16	1.9	15	93	6	51	43	0	10	46	1.37
67023700--67024445	374	2.0	375	96	0	1368	27	19	17	35	1.94
67027110--67027134	12	2.1	12	100	0	50	16	16	24	44	1.86
67031080--67031143	20	3.2	20	70	0	56	20	18	21	39	1.93
67034382--67034411	4	7.5	4	100	0	60	23	0	0	76	0.78
67037315--67037362	24	2.0	25	88	12	73	33	25	6	35	1.81
67038442--67038599	79	2.0	79	91	2	255	30	22	18	27	1.98
67041781--67041810	15	1.9	16	93	6	53	20	20	33	26	1.97
67042260--67042311	26	2.0	26	100	0	104	38	7	15	38	1.76
67048368--67048442	35	2.3	33	84	13	93	28	34	0	37	1.57
67061382--67061517	69	2.0	69	88	0	200	38	8	12	40	1.74
67061973--67062018	16	2.9	16	83	0	56	30	23	2	43	1.66
67063989--67064027	18	2.2	17	86	13	53	33	0	20	46	1.51
67064032--67064254	75	3.0	75	100	0	446	37	8	21	33	1.83
67064403--67064500	23	4.3	23	90	2	162	20	21	26	31	1.98
67064405--67064493	45	2.0	45	95	0	160	19	22	26	31	1.97
67069255--67069302	18	2.9	16	79	11	60	25	8	2	64	1.32
67069263--67069339	16	5.1	15	71	18	54	28	9	2	59	1.41
67069463--67069514	26	2.0	26	81	11	61	28	5	7	57	1.50
67069550--67069659	26	4.3	26	72	4	80	24	6	7	61	1.45
67071130--67071184	27	2.0	27	85	0	74	12	14	10	61	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67072105--67072232	27	4.7	26	70	9	69	27	17	27	27	1.98
67072240--67072437	81	2.4	81	82	1	218	19	16	26	38	1.92
67073809--67074088	93	3.0	93	91	0	434	26	20	24	28	1.99
67081226--67081251	11	2.4	11	100	0	52	34	19	0	46	1.50
67091439--67091479	21	2.0	21	100	0	82	21	19	14	43	1.87
67091458--67091557	40	2.5	40	85	4	123	17	15	25	43	1.87
67092632--67092672	20	2.0	20	85	0	55	34	19	2	43	1.64
67100110--67100503	177	2.2	177	93	0	671	28	22	20	29	1.98
67100340--67100635	132	2.2	132	93	0	502	27	21	21	29	1.98
67100604--67100725	45	2.7	45	97	0	226	28	22	20	28	1.98
67100649--67101020	134	2.8	133	86	2	521	28	22	18	30	1.97
67100604--67100997	45	8.8	44	70	11	214	28	22	19	29	1.98
67101195--67101322	64	2.0	64	89	0	193	35	14	19	31	1.91
67102919--67102968	15	3.3	15	75	20	50	0	12	6	82	0.85
67111605--67111660	20	2.5	23	80	16	73	21	1	10	66	1.32
67111605--67111660	22	2.5	22	83	13	71	21	1	10	66	1.32
67114083--67114133	22	2.3	22	75	0	57	33	3	7	54	1.47
67115828--67115997	47	3.6	47	78	13	224	28	28	20	22	1.98
67115822--67116040	47	4.7	45	75	15	180	29	27	19	23	1.98
67115821--67116046	93	2.4	93	92	0	380	29	27	19	23	1.98
67117677--67117729	23	2.3	23	72	18	56	58	1	3	35	1.27
67121066--67121144	31	2.5	31	89	0	122	26	26	16	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67121172--67121259	42	2.1	42	86	0	122	36	18	14	30	1.91
67121404--67122281	52	16.9	52	97	0	1634	28	23	21	27	1.99
67124046--67124115	31	2.3	31	94	0	122	28	25	14	31	1.95
67124143--67124230	42	2.1	42	85	4	115	35	19	14	30	1.92
67124375--67124748	26	14.4	26	85	1	500	27	24	21	27	1.99
67124375--67124748	52	7.2	52	94	1	644	27	24	21	27	1.99
67125318--67125418	27	3.8	26	72	15	80	22	20	19	36	1.95
67125525--67125650	27	4.7	27	90	0	198	30	7	20	42	1.79
67125443--67125745	27	11.1	27	81	5	155	34	7	20	37	1.82
67125523--67125675	81	1.9	81	81	0	189	32	7	21	38	1.81
67125643--67125961	27	11.8	27	84	2	338	41	8	23	26	1.83
67125643--67125961	81	3.9	81	81	0	379	41	8	23	26	1.83
67125985--67126059	27	2.7	27	83	6	89	34	10	16	38	1.83
67128582--67128677	48	2.0	48	100	0	192	25	12	18	43	1.85
67131228--67131265	18	2.1	18	95	0	67	7	28	39	23	1.83
67132132--67132175	20	2.2	20	100	0	88	18	15	22	43	1.88
67132735--67132841	47	2.2	48	83	1	135	22	18	16	42	1.89
67135228--67135266	18	2.2	18	90	4	62	12	25	15	46	1.81
67135894--67135927	17	2.0	17	100	0	68	35	11	11	41	1.78
67138554--67138743	48	3.9	48	85	3	238	33	27	18	20	1.96
67141856--67141911	28	2.0	28	82	0	67	32	8	0	58	1.29
67141962--67142026	14	4.6	14	74	11	53	33	3	0	63	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67142348--67142388	21	2.0	21	90	0	64	21	2	2	73	1.07
67154380--67154932	206	2.7	205	91	1	890	31	18	22	27	1.97
67156374--67156429	28	2.0	28	82	0	67	32	8	0	58	1.29
67156480--67156544	14	4.6	14	74	11	53	33	3	0	63	1.10
67157800--67157839	17	2.4	17	95	0	71	42	22	12	22	1.87
67158523--67158597	15	5.0	15	85	0	96	14	33	25	26	1.94
67162117--67162437	130	2.4	130	77	7	321	35	19	18	26	1.95
67165286--67165528	132	1.8	132	88	2	371	30	23	18	27	1.97
67181201--67181253	21	2.5	20	81	9	61	54	1	0	43	1.11
67182784--67182833	25	2.0	25	100	0	100	36	24	4	36	1.74
67192712--67192957	49	4.9	50	84	2	316	28	26	19	25	1.99
67193184--67193237	27	2.0	27	85	0	72	38	12	7	40	1.72
67197627--67197659	15	2.2	15	100	0	66	42	33	12	12	1.79
67201818--67201873	25	2.3	25	87	3	78	17	26	23	32	1.97
67207681--67207754	25	3.0	25	75	11	71	29	16	28	25	1.97
67211236--67211268	17	2.0	17	88	5	50	27	9	0	63	1.24
67212096--67212143	19	2.6	18	83	9	53	68	0	27	4	1.07
67213495--67213531	13	2.8	13	91	4	56	27	0	21	51	1.48
67214015--67214072	20	2.9	20	87	5	82	18	36	32	12	1.88
67214643--67214984	108	3.2	104	78	10	364	23	20	18	37	1.94
67214630--67214945	105	3.0	104	79	7	357	22	20	17	39	1.93
67215223--67215285	27	2.3	27	89	8	92	17	0	34	47	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67215234--67215292	27	2.2	27	84	6	75	20	1	33	44	1.62
67215965--67216003	20	2.0	20	85	10	53	20	2	7	69	1.26
67216139--67216186	20	2.3	20	76	13	53	64	4	4	27	1.30
67218484--67218532	21	2.3	22	79	13	57	24	14	0	61	1.33
67218614--67218689	28	2.7	28	80	8	84	30	15	1	52	1.51
67218703--67218745	21	2.1	20	82	4	50	25	6	0	67	1.15
67219137--67219266	49	2.7	49	91	3	210	27	13	1	56	1.46
67219189--67219680	76	6.5	74	81	8	498	25	13	1	59	1.41
67219234--67219670	27	17.2	27	66	17	192	26	12	0	60	1.39
67219189--67219689	151	3.3	148	84	6	579	25	13	1	59	1.42
67219490--67219542	21	2.5	22	78	12	56	30	11	0	58	1.33
67219481--67219542	22	2.8	23	76	11	58	27	11	0	61	1.30
67222648--67223362	114	6.4	109	87	5	782	36	15	21	26	1.93
67231787--67231840	23	2.2	24	83	6	65	9	7	14	68	1.38
67232640--67232682	22	1.9	22	85	4	59	30	2	2	65	1.18
67240833--67240873	19	2.0	21	86	9	59	12	24	19	43	1.85
67245279--67245373	43	2.2	44	83	7	115	26	28	21	24	1.99
67251125--67251194	31	2.3	31	94	0	122	50	8	15	25	1.73
67254804--67254884	5	16.0	5	74	23	55	16	7	0	76	1.00
67254854--67254897	19	2.2	19	88	8	61	22	0	2	75	0.92
67257334--67257464	45	3.0	44	84	4	165	26	28	21	23	1.99
67265028--67265104	36	2.3	35	80	14	90	14	5	5	75	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67273448--67273541	47	2.0	47	97	0	179	35	19	15	29	1.93
67282326--67282474	41	3.7	40	80	11	133	34	24	12	28	1.91
67285469--67285539	35	2.0	35	94	0	124	22	5	18	53	1.65
67291747--67291846	30	3.3	30	81	5	139	25	24	25	26	2.00
67296426--67296484	29	2.0	31	80	12	70	37	1	20	40	1.63
67308193--67308244	27	2.0	26	84	3	68	34	21	26	17	1.95
67315661--67315712	27	2.0	26	84	3	68	34	21	26	17	1.95
67319273--67319303	14	2.2	14	94	0	53	16	3	3	77	1.03
67321283--67321314	13	2.5	13	100	0	64	31	25	18	25	1.98
67325411--67325496	40	2.2	40	84	0	109	33	11	16	38	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279