Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  277  of  279  ( 33431 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90350538--90350612
30
2.6
30
79
10
75
45
2
0
52
1.15
90350658--90350694
13
2.6
14
87
12
58
56
5
0
37
1.22
90350717--90350803
35
2.5
35
78
12
99
56
2
2
39
1.25
90350850--90350934
23
4.0
22
71
21
72
80
3
2
14
0.95
90350858--90350924
9
8.0
8
82
11
73
80
2
1
14
0.90
90350858--90350924
17
4.0
16
77
14
73
80
2
1
14
0.90
90350909--90350967
12
4.8
12
71
20
50
76
1
8
13
1.09
90363068--90363102
18
1.9
18
100
0
70
37
17
11
34
1.85
90363324--90363358
18
1.9
18
100
0
70
37
17
11
34
1.85
90363017--90363528
256
2.0
256
99
0
1015
30
20
17
31
1.95
90367642--90367716
23
3.3
23
64
14
64
30
2
6
60
1.37
90368070--90368125
20
2.6
21
91
8
87
60
0
3
35
1.14
90368138--90368197
25
2.3
27
81
15
74
50
5
0
45
1.23
90370140--90370191
26
2.0
26
96
0
95
44
15
19
21
1.87
90386635--90386662
6
4.7
6
100
0
56
46
0
0
53
1.00
90386617--90386669
26
2.0
27
82
10
65
49
1
0
49
1.12
90386760--90386845
44
2.0
43
86
2
118
37
10
3
48
1.55
90388248--90388298
22
2.3
23
96
3
95
7
9
9
72
1.28
90390694--90390822
50
2.5
51
88
5
190
35
15
22
26
1.94
90390798--90391095
31
9.6
31
86
8
410
28
18
26
26
1.98
90390798--90391101
62
4.9
62
93
2
495
28
18
25
26
1.98
90391177--90391332
42
3.6
42
84
6
172
28
13
26
31
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90392414--90392477
21
3.5
17
82
17
83
73
9
3
14
1.20
90392414--90392478
17
3.4
19
79
14
71
73
9
3
13
1.19
90392655--90392739
3
29.3
3
79
11
88
64
0
32
2
1.06
90392660--90392739
34
2.4
34
85
4
99
65
0
32
2
1.06
90392655--90392739
37
2.3
37
87
2
116
64
0
32
2
1.06
90392802--90392831
10
3.0
10
90
0
51
70
3
26
0
1.03
90393249--90393273
12
2.1
12
100
0
50
32
16
8
44
1.76
90393581--90393685
38
2.7
38
73
8
113
31
28
18
21
1.97
90393791--90393851
28
2.5
23
79
15
61
29
22
1
45
1.62
90398874--90398949
39
1.9
39
94
0
134
22
23
30
23
1.99
90409431--90409476
19
2.4
19
85
7
58
19
21
15
43
1.87
90414220--90414363
45
3.2
44
81
7
175
27
18
24
29
1.98
90413880--90414605
178
4.1
178
85
4
930
30
19
21
28
1.97
90414151--90414717
89
6.4
89
69
12
374
29
20
21
28
1.98
90414446--90414763
45
7.1
45
66
9
157
30
20
20
28
1.98
90413910--90414628
356
2.0
355
91
0
1123
30
19
21
28
1.97
90414330--90414871
268
2.0
266
85
4
725
30
20
20
28
1.98
90414990--90415130
44
3.3
44
67
16
143
35
23
23
17
1.95
90415035--90415169
39
3.3
39
67
17
121
37
22
22
17
1.94
90414909--90416216
87
15.2
87
93
2
1949
36
21
22
19
1.95
90416058--90416244
44
4.3
43
74
9
137
31
21
20
25
1.98
90416381--90416450
35
2.0
35
100
0
140
25
22
17
34
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90419389--90419429
6
6.5
6
89
10
64
14
0
4
80
0.87
90421885--90421935
20
2.5
20
83
3
57
21
21
15
41
1.90
90421966--90422144
39
4.6
39
89
0
268
14
27
21
35
1.93
90424904--90425015
44
2.5
45
82
5
129
36
12
22
28
1.91
90426416--90426451
7
5.0
7
89
3
54
55
13
5
25
1.60
90429833--90429986
78
2.0
78
94
0
272
25
11
16
46
1.79
90437547--90437598
25
2.1
25
85
7
70
50
1
1
46
1.23
90455101--90455125
10
2.5
10
100
0
50
16
24
16
44
1.86
90456579--90456608
15
1.9
16
93
6
53
53
6
20
20
1.67
90464858--90464912
26
2.1
26
86
10
76
65
0
5
29
1.15
90464857--90464921
22
2.8
22
82
15
69
64
0
6
29
1.17
90465910--90466029
37
3.2
37
81
3
132
26
19
24
30
1.98
90466159--90466207
21
2.3
20
80
10
53
44
2
24
28
1.65
90481755--90481821
30
2.2
32
84
10
88
38
2
2
55
1.31
90484103--90484128
6
4.3
6
100
0
52
50
15
0
34
1.45
90487983--90488007
6
4.2
6
100
0
50
68
16
16
0
1.22
90496487--90496536
25
2.0
25
92
7
84
44
2
4
50
1.32
90511759--90511848
21
4.3
21
72
9
67
17
18
17
45
1.86
90511777--90511855
21
3.8
21
75
0
77
15
21
17
45
1.85
90511741--90511897
42
3.7
42
81
3
138
17
21
15
45
1.84
90524050--90524086
18
2.1
18
100
0
74
56
16
16
10
1.66
90526365--90526570
45
4.6
45
88
2
299
25
24
25
24
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90526510--90526642
66
2.0
66
86
0
185
24
18
33
23
1.97
90526555--90526599
21
2.1
21
91
0
72
26
13
40
20
1.89
90534418--90534464
24
2.0
24
87
8
69
34
14
14
36
1.88
90535858--90535908
26
2.0
25
92
0
75
29
19
27
21
1.97
90540035--90540083
24
2.0
24
100
0
98
20
12
32
34
1.90
90541966--90542180
46
4.7
46
92
1
324
21
23
13
40
1.89
90545963--90545998
18
1.9
19
88
5
56
36
22
0
41
1.54
90547624--90547688
20
3.2
21
69
20
57
13
26
20
40
1.89
90547606--90547706
39
2.6
39
90
0
148
13
25
22
37
1.92
90548875--90549010
56
2.4
56
92
0
227
31
25
15
27
1.96
90550657--90550708
20
2.6
20
84
0
77
15
30
32
21
1.94
90553618--90553647
13
2.2
14
94
5
53
43
13
3
40
1.60
90560024--90560057
12
2.8
12
90
0
50
58
11
0
29
1.33
90560103--90560137
17
2.1
17
89
10
54
68
0
0
31
0.90
90586517--90586576
13
4.3
14
77
10
52
58
0
1
40
1.08
90586686--90586724
20
2.0
20
89
0
60
53
0
0
46
1.00
90592473--90592531
30
2.0
29
90
3
91
45
11
3
38
1.58
90596036--90596061
12
2.2
12
100
0
52
0
26
0
73
0.84
90598829--90598946
61
1.9
62
87
5
177
38
5
1
54
1.35
90599361--90599403
14
3.0
14
79
3
50
37
0
6
55
1.27
90604646--90604670
6
4.2
6
100
0
50
32
0
16
52
1.44
90604872--90604939
34
2.0
34
100
0
136
32
26
11
29
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90606047--90606107
15
4.1
15
80
6
52
34
14
1
49
1.54
90606057--90606100
14
3.1
14
80
6
52
34
15
0
50
1.45
90606625--90606659
17
2.1
17
89
10
54
71
0
2
25
1.00
90611218--90611247
7
4.1
7
95
4
51
13
0
0
86
0.57
90614590--90614619
14
2.1
14
93
0
51
46
36
0
16
1.47
90619020--90619147
43
3.0
44
78
11
156
22
17
28
30
1.97
90619020--90619145
44
2.9
43
78
11
148
23
17
28
30
1.97
90622197--90622222
2
13.0
2
100
0
52
50
0
0
50
1.00
90631297--90631348
16
3.6
14
80
19
54
30
1
1
65
1.14
90632119--90632193
29
2.6
28
82
6
87
53
2
1
42
1.23
90636181--90636241
32
1.9
32
89
0
95
39
8
6
45
1.60
90636810--90636865
29
1.9
29
82
7
69
42
8
3
44
1.53
90637069--90637152
41
2.0
41
100
0
168
48
2
23
25
1.63
90637211--90637257
17
2.7
19
78
21
59
34
0
2
63
1.06
90644879--90644911
10
3.2
11
87
12
52
69
6
0
24
1.10
90646236--90646270
3
11.7
3
93
0
61
0
31
2
65
1.07
90648549--90648611
31
2.1
31
93
3
110
25
15
7
50
1.71
90649654--90649751
31
3.2
30
75
15
94
36
21
19
22
1.95
90657157--90657276
6
19.7
6
72
13
84
18
4
16
60
1.51
90657109--90657190
18
4.5
18
72
16
62
18
3
17
60
1.49
90657135--90657252
62
1.9
62
94
0
209
19
5
17
57
1.58
90657207--90657285
18
4.1
18
77
17
86
20
7
12
59
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90657296--90657355
6
10.0
6
83
0
57
20
6
15
58
1.59
90657427--90657549
48
2.6
48
93
0
201
22
15
17
43
1.87
90657506--90657672
89
1.9
89
96
0
307
31
14
14
39
1.87
90657887--90657936
15
3.3
15
82
0
64
18
10
34
38
1.84
90659954--90659995
20
2.1
20
100
0
84
42
16
9
30
1.80
90662230--90662265
9
3.8
9
86
13
54
83
0
16
0
0.65
90662688--90662794
39
2.7
39
81
5
144
41
11
12
35
1.78
90663705--90663763
28
2.1
27
87
3
82
25
5
15
54
1.61
90663699--90663764
28
2.5
25
77
13
78
27
6
15
51
1.66
90663767--90663793
2
13.5
2
100
0
54
0
0
51
48
1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279