genome.fa.s8.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  32  of  279  ( 33431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10708641--10709546	40	22.6	40	98	0	1692	24	20	27	27	1.99
10717356--10717501	40	3.7	39	83	5	177	26	19	27	26	1.99
10717317--10717501	79	2.3	81	82	7	218	24	21	28	25	1.99
10717449--10717580	66	2.0	66	100	0	264	27	18	28	25	1.98
10721775--10721820	24	1.9	24	90	0	74	32	13	43	10	1.78
10722152--10722188	15	2.5	15	90	0	65	29	18	16	35	1.93
10726165--10726439	49	5.5	49	82	6	374	30	24	18	26	1.98
10726157--10726444	100	2.9	100	100	0	576	29	24	19	26	1.98
10727093--10727152	30	2.0	30	84	9	79	28	26	6	38	1.81
10727911--10728012	53	1.9	54	93	2	179	28	21	18	31	1.97
10731981--10732900	49	18.8	49	99	0	1822	30	26	18	24	1.98
10737995--10738110	46	2.5	46	92	0	187	29	28	21	20	1.98
10739607--10739667	30	2.0	30	83	0	77	29	22	8	39	1.83
10744469--10744529	30	2.0	30	83	0	77	39	8	22	29	1.83
10745238--10745445	67	3.2	64	77	10	197	31	17	28	22	1.96
10755423--10755535	56	2.0	56	98	0	217	23	15	34	26	1.95
10756493--10756544	27	2.0	26	84	3	68	17	26	21	34	1.95
10763436--10763613	43	4.1	43	92	0	302	11	24	33	30	1.91
10768851--10768882	17	1.9	17	93	6	57	31	0	25	43	1.55
10774179--10774261	43	1.9	43	92	0	139	36	24	14	25	1.93
10787458--10787679	40	5.6	40	92	1	349	24	22	26	27	2.00
10795574--10795745	40	4.3	40	94	2	285	23	22	26	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10799428--10799502	29	2.6	29	87	6	109	26	34	16	22	1.95
10801304--10801342	16	2.5	15	84	12	51	48	10	25	15	1.76
10801542--10801628	28	3.1	28	80	6	104	24	11	35	28	1.90
10802297--10802322	11	2.4	11	100	0	52	26	0	19	53	1.45
10803963--10803988	13	2.0	13	100	0	52	15	46	23	15	1.83
10805182--10805281	42	2.3	43	84	5	141	27	18	23	32	1.97
10805182--10805290	43	2.6	42	81	10	132	25	17	24	32	1.97
10812564--10812632	15	4.7	14	76	5	57	11	15	15	56	1.67
10821243--10821402	43	3.7	41	74	9	115	31	25	18	25	1.98
10827722--10827763	21	2.0	21	95	0	75	33	21	9	35	1.86
10829381--10829588	104	2.0	104	88	3	312	26	29	18	25	1.98
10829354--10829643	48	5.9	48	82	9	314	24	30	18	25	1.98
10832074--10832279	40	5.2	40	97	1	371	26	27	22	22	1.99
10853298--10853462	43	3.9	42	73	14	133	25	15	27	32	1.95
10862524--10863025	80	6.3	79	78	9	344	31	8	19	40	1.82
10862522--10863027	53	9.5	53	79	7	407	31	8	18	40	1.82
10862553--10863027	27	17.8	27	76	8	262	31	8	18	41	1.81
10864558--10864603	24	1.9	24	86	0	65	17	34	4	43	1.69
10866954--10867110	43	3.7	42	77	11	140	31	26	18	24	1.98
10874695--10874800	42	2.5	43	86	4	144	25	21	26	26	2.00
10899134--10899179	24	1.9	24	86	0	65	28	17	15	39	1.90
10901508--10901647	60	2.3	60	83	8	169	26	23	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10901637--10901676	20	2.0	20	85	0	53	27	25	20	27	1.99
10910062--10910215	47	3.3	47	90	0	209	28	29	9	31	1.89
10911194--10911261	33	2.1	33	91	5	111	26	26	8	38	1.85
10914727--10914893	40	4.2	40	86	5	225	24	26	23	25	2.00
10914727--10914893	79	2.1	80	86	6	234	24	26	23	25	2.00
10937943--10938573	315	2.0	315	100	0	1262	32	16	17	33	1.92
10940898--10940949	21	2.5	21	79	14	63	36	3	19	40	1.70
10943557--10943598	17	2.3	19	80	12	52	30	4	42	21	1.73
10943633--10943706	38	1.9	38	81	5	87	22	21	18	36	1.95
10946040--10946069	15	2.0	15	100	0	60	33	0	13	53	1.40
10952678--10952855	27	6.6	27	84	3	205	29	28	15	26	1.96
10952699--10952854	82	1.9	81	88	3	233	29	28	15	26	1.96
10960868--10961045	27	6.6	27	84	3	205	29	28	15	26	1.96
10960889--10961044	82	1.9	81	88	3	233	29	28	15	26	1.96
10965161--10965295	64	2.1	64	94	1	236	49	9	12	28	1.72
10965705--10965734	13	2.3	13	100	0	60	80	0	0	20	0.72
10976712--10977100	50	7.7	50	74	4	298	31	25	17	24	1.97
10976712--10977051	101	3.4	101	80	2	360	30	26	17	25	1.98
10976705--10977005	151	2.0	152	86	1	426	30	26	18	24	1.98
10976716--10977050	151	2.2	150	82	3	386	31	25	17	25	1.97
10977510--10977587	39	2.0	39	100	0	156	41	15	10	33	1.81
10980100--10980159	15	4.0	15	84	0	75	55	13	18	13	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10983906--10984202	50	5.9	50	79	2	308	31	24	18	25	1.97
10983969--10984246	151	1.8	150	80	7	330	32	25	16	25	1.96
10984655--10984729	39	1.9	39	94	0	132	42	16	8	33	1.77
10984661--10984745	39	2.2	39	87	8	120	43	15	9	31	1.78
10986824--10986887	31	2.1	31	93	0	110	23	23	15	37	1.93
10987114--10987177	31	2.1	31	93	0	110	23	23	15	37	1.93
10986639--10987220	290	2.0	290	100	0	1164	28	26	18	25	1.98
10987386--10987493	25	4.4	24	83	8	128	27	22	22	27	1.99
10987374--10987493	50	2.4	47	83	9	150	27	22	23	26	1.99
10987541--10987587	20	2.3	20	92	7	78	34	19	10	36	1.86
10994774--10994837	31	2.1	31	93	0	110	23	23	15	37	1.93
10995034--10995153	50	2.4	47	83	9	150	28	22	22	26	1.99
10995046--10995153	25	4.4	25	86	5	132	28	22	21	27	1.99
10995211--10995257	20	2.3	20	96	0	85	34	19	10	36	1.86
10995212--10995267	25	2.3	24	80	17	62	35	19	8	35	1.83
10997511--10997568	28	2.1	28	86	0	80	12	27	18	41	1.86
11001119--11001303	40	4.7	39	85	2	201	25	27	23	23	2.00
11001112--11001306	79	2.5	80	79	5	216	25	26	23	24	2.00
11009190--11009417	40	5.8	38	83	9	223	26	27	21	24	1.99
11009190--11009414	80	2.8	79	83	6	267	26	27	22	23	1.99
11016871--11016953	40	2.1	40	97	0	157	50	6	14	28	1.66
11019484--11019597	44	2.6	44	81	9	135	24	14	28	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11021047--11021098	25	2.1	25	85	7	70	26	19	7	46	1.77
11021985--11022035	22	2.3	22	96	0	93	23	27	13	35	1.93
11023432--11023526	44	2.2	42	81	7	111	27	17	23	31	1.97
11029539--11029609	27	2.6	28	79	2	81	50	9	11	28	1.70
11031621--11031739	41	2.9	41	89	1	168	26	15	26	32	1.95
11031771--11031867	43	2.3	43	88	0	140	30	17	24	26	1.97
11035588--11035813	27	8.4	27	83	1	247	25	23	18	32	1.97
11039684--11039790	27	4.0	27	86	4	76	28	22	16	31	1.96
11039700--11039844	27	5.4	27	91	0	191	24	21	17	35	1.95
11039856--11039917	29	2.1	29	100	0	124	30	22	16	30	1.96
11042016--11042125	27	4.1	27	85	4	168	40	5	23	30	1.77
11043632--11043686	20	2.8	20	97	0	101	20	34	30	14	1.92
11045716--11045740	3	8.3	3	100	0	50	68	0	0	32	0.90
11053256--11053283	13	2.2	13	100	0	56	21	7	35	35	1.81
11055892--11056088	93	2.1	93	82	3	227	35	14	21	28	1.93
11057955--11057994	21	1.9	21	84	0	53	35	10	20	35	1.86
11060585--11060780	55	3.6	54	80	6	236	34	18	25	20	1.96
11062341--11062451	43	2.6	43	76	2	107	26	25	19	28	1.99
11078589--11078654	22	3.0	22	75	0	78	12	24	28	34	1.91
11078565--11078654	44	2.0	44	84	0	117	12	26	25	35	1.91
11078794--11078846	27	2.0	27	85	7	72	18	24	24	32	1.97
11079567--11079763	62	3.1	62	98	1	376	46	18	11	24	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11089248--11089289	22	2.0	22	85	4	59	23	26	38	11	1.90
11099042--11099084	14	2.9	16	80	16	56	58	4	4	32	1.39
11099400--11099452	7	7.7	7	85	2	63	71	11	13	3	1.26
11102832--11102881	20	2.5	20	80	6	57	70	4	6	20	1.25
11107067--11107329	40	6.6	40	88	3	325	26	27	20	24	1.99
11115020--11115282	40	6.6	40	88	3	325	26	27	20	24	1.99
11123530--11123554	7	3.6	7	100	0	50	28	28	0	44	1.55
11135947--11135985	6	6.5	6	87	0	51	15	23	0	61	1.33
11142844--11142884	21	2.0	21	85	0	55	31	21	19	26	1.97
11144259--11144419	57	2.8	58	73	5	164	29	16	22	31	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279