Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  98  of  279  ( 33431 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31616570--31616938
44
8.5
44
73
12
209
26
21
21
30
1.98
31616570--31616895
44
7.6
42
73
11
225
26
22
20
30
1.98
31616604--31616941
170
2.0
173
85
4
461
26
23
21
29
1.99
31629525--31629586
12
5.9
10
77
18
56
64
4
3
27
1.29
31629539--31629570
3
10.7
3
93
0
55
65
0
3
31
1.08
31630232--31630277
23
2.0
23
100
0
92
8
0
34
56
1.30
31635212--31635261
24
2.1
24
100
0
100
44
16
16
24
1.86
31635294--31635320
14
1.9
14
100
0
54
37
62
0
0
0.95
31640233--31640299
14
4.7
15
75
17
54
55
1
0
43
1.09
31640234--31640423
61
3.2
60
66
20
162
51
4
2
42
1.33
31640378--31640419
15
2.9
15
82
10
52
52
0
0
47
1.00
31640251--31640544
120
2.5
120
94
2
502
50
4
3
42
1.39
31644081--31644109
6
4.8
6
100
0
58
31
0
68
0
0.89
31648689--31648740
16
3.2
16
94
0
86
28
0
36
34
1.58
31648721--31648815
45
2.1
44
88
1
136
34
5
27
32
1.79
31648953--31649007
25
2.2
25
84
9
69
52
1
0
45
1.11
31648984--31649033
16
3.1
16
73
21
50
58
0
0
42
0.98
31648986--31649033
18
2.8
18
74
22
50
56
0
0
43
0.99
31657379--31657457
30
2.7
29
76
5
70
39
0
11
49
1.39
31669474--31669535
32
1.9
33
83
9
83
72
4
12
9
1.25
31670504--31670552
24
2.0
24
84
7
64
57
6
0
36
1.24
31670557--31670603
6
7.7
6
80
4
58
53
0
0
46
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31670551--31670606
12
4.5
13
76
10
64
53
0
0
46
1.00
31670559--31670609
25
2.0
25
96
0
93
58
0
0
41
0.98
31670536--31670606
19
3.9
19
72
20
62
56
0
0
43
0.99
31670644--31670687
18
2.4
19
84
3
63
13
70
2
13
1.26
31670644--31670681
6
6.2
6
93
3
58
15
68
2
13
1.32
31684462--31684546
41
2.1
41
95
0
152
24
22
18
34
1.96
31688561--31688655
21
4.5
21
79
0
100
46
18
22
12
1.83
31688561--31688662
42
2.4
42
83
3
125
46
17
23
12
1.83
31688851--31688887
17
2.2
17
90
0
56
48
16
0
35
1.46
31694649--31694719
21
3.4
21
86
0
97
47
18
19
14
1.82
31707949--31707983
18
2.0
17
88
5
52
20
17
8
54
1.68
31711698--31711764
30
2.2
30
83
5
80
17
50
1
29
1.55
31712177--31712211
18
2.0
18
88
5
54
34
5
0
60
1.21
31717762--31717803
15
2.9
15
83
16
54
57
16
4
21
1.58
31724157--31724219
28
2.2
28
82
2
72
68
1
6
23
1.22
31727468--31727575
51
2.1
51
87
3
155
43
14
10
31
1.79
31727468--31727575
17
6.4
17
70
4
83
43
14
10
31
1.79
31728617--31728724
33
3.5
31
74
12
89
50
15
0
33
1.51
31730142--31730208
32
2.1
31
83
8
82
37
5
0
56
1.24
31735311--31735347
19
2.0
18
89
5
56
59
0
0
40
0.97
31737503--31737559
26
2.2
26
84
9
73
17
24
5
52
1.65
31744899--31744977
39
2.0
39
95
0
140
20
15
29
35
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31748346--31748477
43
3.0
44
79
9
130
32
24
17
25
1.97
31752114--31752172
18
3.5
18
70
25
65
40
32
0
27
1.56
31755465--31755535
21
3.2
22
82
9
83
63
8
14
14
1.51
31755465--31755535
22
3.3
22
78
13
76
63
8
14
14
1.51
31755592--31755653
22
2.7
23
76
14
83
56
6
11
25
1.58
31755592--31755708
40
2.7
43
79
9
132
56
8
15
19
1.65
31759674--31759849
91
2.0
88
86
5
248
35
19
11
32
1.89
31759978--31760039
10
6.3
10
81
3
81
66
1
1
30
1.11
31759976--31760039
19
3.3
19
80
4
83
65
1
1
31
1.11
31759979--31760040
29
2.2
28
88
2
88
64
1
1
32
1.13
31761077--31761187
19
5.8
19
86
0
168
38
8
14
38
1.76
31761084--31761187
38
2.7
38
96
0
190
39
7
13
39
1.73
31761077--31761213
19
6.9
21
84
4
105
37
7
15
39
1.75
31771546--31771572
6
4.5
6
100
0
54
70
0
29
0
0.88
31782656--31782698
22
2.0
22
95
0
77
34
18
9
37
1.83
31785942--31785981
17
2.4
17
91
0
62
20
25
40
15
1.90
31787353--31787431
36
2.2
35
84
8
106
12
12
34
40
1.81
31790624--31790695
27
2.6
28
84
6
94
30
4
2
62
1.28
31790912--31791086
93
1.9
91
81
5
208
37
7
16
38
1.77
31790912--31791086
92
1.9
91
81
6
210
37
7
16
38
1.77
31791381--31791425
8
6.1
7
80
19
56
13
0
40
46
1.43
31791495--31791611
34
3.4
34
81
5
146
41
0
15
41
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31791688--31792957
125
10.2
125
84
1
1467
38
15
16
29
1.89
31791708--31792919
625
1.9
625
85
2
1684
39
15
16
28
1.89
31797949--31797987
18
2.2
18
90
0
60
46
7
20
25
1.77
31798144--31798208
31
2.1
31
85
0
85
18
27
21
32
1.97
31799561--31799599
20
1.9
21
84
5
53
66
2
2
28
1.18
31801030--31801069
6
6.7
6
100
0
80
17
35
15
32
1.91
31802570--31802626
28
2.0
28
96
0
105
29
12
14
43
1.81
31803913--31803945
7
4.7
7
100
0
66
45
12
0
42
1.41
31808546--31808708
86
1.9
86
84
5
222
36
23
13
25
1.92
31816813--31816847
12
2.9
12
86
0
52
8
17
2
71
1.23
31816813--31816914
24
4.2
24
70
26
79
9
20
1
67
1.29
31816851--31816910
20
3.0
20
80
7
61
8
21
1
68
1.25
31816851--31816915
18
3.5
17
74
15
58
9
21
1
67
1.27
31818773--31818849
40
1.9
40
91
0
127
33
12
22
31
1.92
31821534--31821569
18
2.1
17
89
5
54
44
0
8
47
1.33
31822188--31822230
16
2.6
16
85
3
50
44
2
2
51
1.27
31827294--31827325
7
4.4
7
96
4
55
84
0
3
12
0.74
31832759--31832801
21
2.0
23
86
9
63
58
9
2
30
1.42
31833526--31833623
34
2.9
33
87
6
142
42
13
14
29
1.83
31834890--31834914
11
2.3
11
100
0
50
48
16
0
36
1.46
31843401--31843452
26
1.9
28
84
7
72
69
5
3
21
1.26
31843838--31843884
18
2.7
17
75
18
51
25
6
2
65
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31844839--31844881
12
3.5
12
78
6
50
62
2
2
32
1.20
31848355--31848410
29
1.9
29
88
0
85
23
33
25
17
1.96
31848759--31848789
16
1.9
16
93
0
53
61
22
3
12
1.46
31853179--31853205
6
4.5
6
100
0
54
51
33
0
14
1.43
31853455--31853499
23
2.0
23
82
8
56
37
8
4
48
1.55
31875479--31875938
232
2.0
232
90
0
722
36
21
13
28
1.91
31876471--31876531
22
2.8
22
76
0
68
42
13
18
26
1.86
31876367--31879136
749
3.7
749
95
0
4888
36
21
13
28
1.92
31878711--31878771
22
2.8
22
76
0
68
42
13
18
26
1.86
31879663--31879710
24
2.0
24
100
0
96
58
16
8
16
1.61
31882196--31882351
68
2.3
68
87
0
213
29
25
12
32
1.93
31884202--31884258
25
2.3
25
87
3
80
19
17
24
38
1.93
31884459--31884514
28
2.0
28
100
0
112
39
14
14
32
1.86
31885398--31885424
12
2.2
12
100
0
54
14
22
25
37
1.93
31890191--31890222
16
1.9
17
93
6
57
37
21
0
40
1.54
31890382--31890537
43
3.7
42
72
14
151
29
27
19
23
1.98
31893204--31893255
22
2.4
21
76
17
54
63
3
3
28
1.30
31893246--31893287
18
2.2
20
80
16
54
47
2
0
50
1.14
31899259--31899298
20
2.0
21
90
5
64
70
10
0
20
1.16
31907112--31908126
83
12.2
83
98
0
1888
28
18
19
33
1.95
31908050--31908401
119
3.0
119
91
0
535
30
19
16
32
1.94
31919846--31919905
3
19.0
3
74
16
50
61
1
1
35
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31919712--31919921
17
12.5
16
67
22
62
60
1
4
33
1.27
31919761--31919926
20
8.1
20
69
23
82
60
1
3
34
1.22
31919826--31919965
54
2.6
53
78
11
133
62
1
2
33
1.16
31921880--31922035
54
3.0
54
89
5
225
47
8
18
25
1.77
31925128--31925232
43
2.4
43
93
0
174
28
21
19
30
1.97
31926842--31926972
12
12.0
11
74
12
94
61
0
2
35
1.14
31926904--31926947
23
1.9
23
86
9
63
61
2
0
36
1.09
31926914--31926955
23
1.9
22
85
9
59
57
2
2
38
1.25
31931101--31931183
43
1.9
43
82
2
103
25
30
16
27
1.97
31931146--31931693
206
2.7
206
89
1
839
29
23
17
29
1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279