Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: At_chr9 Parameters: 2 7 7 80 10 50 1000 Length: 91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  194  of  279  ( 33431 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63598095--63598146
20
2.6
20
77
14
54
30
1
0
67
1.02
63598750--63598807
18
3.4
16
76
23
57
41
5
0
53
1.23
63600239--63600270
15
2.1
15
100
0
64
46
21
12
18
1.82
63602441--63602478
14
2.7
14
84
12
51
57
0
0
42
0.98
63613869--63614107
3
80.3
3
66
11
82
60
1
7
30
1.33
63615764--63616268
44
11.5
44
67
16
244
26
19
24
29
1.99
63615761--63616267
88
5.8
88
90
1
775
26
19
24
29
1.99
63616226--63616659
88
4.9
88
84
2
498
22
23
20
33
1.97
63616417--63616649
44
5.3
43
62
18
113
22
23
21
32
1.98
63616712--63616837
64
2.0
64
88
0
189
37
16
17
28
1.92
63621362--63621403
19
2.2
19
83
8
50
40
9
23
26
1.85
63623516--63623771
6
42.3
6
80
5
205
58
1
8
31
1.35
63623920--63623984
3
22.0
3
79
3
69
63
3
4
29
1.30
63641748--63641915
69
2.4
70
85
5
209
29
13
22
34
1.92
63641934--63642467
144
3.7
143
79
12
533
31
15
19
33
1.93
63641939--63642353
72
5.5
76
89
3
513
33
15
19
32
1.93
63642576--63642822
88
2.8
88
82
5
266
28
16
19
36
1.93
63642755--63643007
73
3.5
72
92
3
409
32
17
18
31
1.94
63645692--63645799
3
35.0
3
70
14
60
62
0
7
30
1.23
63648545--63648570
13
2.0
13
100
0
52
46
15
0
38
1.46
63650553--63650657
37
2.9
37
91
2
169
24
21
17
36
1.95
63650621--63650837
52
4.2
52
84
8
284
27
22
14
35
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63650671--63650843
46
3.7
46
84
9
231
28
22
14
34
1.93
63650620--63650843
98
2.3
98
92
0
367
28
22
14
34
1.93
63655250--63655397
44
3.3
44
71
10
131
28
20
21
29
1.98
63655247--63655456
89
2.4
88
82
2
242
28
18
24
28
1.98
63655437--63655904
137
3.4
137
85
1
580
30
15
23
30
1.95
63655560--63655781
45
4.9
45
70
11
148
29
18
23
28
1.97
63655796--63655954
44
3.7
45
77
5
150
30
13
22
33
1.93
63658928--63658987
22
2.6
22
89
7
84
38
20
8
33
1.82
63659770--63659908
61
2.3
60
80
7
145
40
13
4
41
1.64
63662009--63662070
29
2.1
29
100
0
124
27
3
9
59
1.44
63663009--63663053
23
2.0
23
86
8
65
60
0
0
40
0.97
63665816--63665860
23
2.0
23
86
0
63
40
8
0
51
1.33
63680967--63681059
46
2.0
46
93
0
159
33
6
32
27
1.82
63684725--63684842
31
3.8
31
90
0
182
26
18
28
26
1.98
63684864--63685027
42
3.6
47
82
11
196
29
14
26
29
1.95
63684942--63685067
42
3.0
42
84
3
146
30
12
24
31
1.92
63693819--63693885
22
3.0
22
80
6
64
32
17
28
20
1.96
63697264--63697347
42
2.0
42
100
0
168
23
21
16
38
1.93
63700096--63700403
46
6.7
45
94
1
454
21
22
26
28
1.99
63707386--63707423
19
2.0
20
85
15
53
36
0
23
39
1.55
63710092--63710128
17
2.1
19
90
10
60
16
0
10
72
1.10
63715397--63715504
26
4.2
26
93
0
189
32
7
24
36
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63716991--63717043
26
2.0
26
85
7
72
37
22
15
24
1.92
63719108--63719273
21
8.0
21
71
4
113
16
19
18
45
1.85
63719144--63719286
42
3.4
42
83
3
180
16
21
18
44
1.87
63721064--63721172
20
5.6
19
76
18
100
34
4
0
59
1.24
63721085--63721133
22
2.2
22
82
13
57
36
8
0
55
1.30
63721466--63721523
17
3.6
17
71
21
61
36
1
0
62
1.06
63733027--63733610
205
2.8
205
93
0
972
30
18
22
28
1.97
63735241--63735349
20
5.6
19
75
18
100
36
3
0
58
1.22
63735262--63735310
22
2.2
22
82
13
57
36
8
0
55
1.30
63735244--63735327
15
4.8
16
73
23
55
36
4
1
57
1.28
63735234--63735349
13
9.1
13
69
16
73
37
3
0
58
1.21
63735234--63735298
25
2.8
23
76
19
55
36
3
1
58
1.23
63735234--63735385
77
1.9
78
82
10
186
36
5
1
57
1.30
63737570--63737617
26
1.9
25
83
8
62
66
10
6
16
1.41
63738109--63738174
19
3.2
21
87
8
73
36
18
9
36
1.82
63738126--63738223
19
5.2
19
90
7
155
34
17
10
37
1.83
63738126--63738223
36
2.6
37
88
9
144
34
17
10
37
1.83
63738620--63739353
206
3.6
206
91
1
1134
29
22
17
30
1.97
63739323--63739651
44
7.5
43
75
8
252
27
24
17
29
1.97
63739331--63739744
88
4.7
88
79
5
462
28
24
18
29
1.98
63739315--63739742
44
9.8
43
72
10
244
27
24
18
30
1.98
63745706--63745755
26
2.0
25
88
4
73
66
8
6
20
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63746245--63746329
19
4.2
21
90
4
70
36
18
9
35
1.84
63746262--63746359
19
5.2
19
92
7
164
35
16
10
37
1.82
63753238--63753482
27
9.1
27
86
2
300
42
19
15
22
1.89
63756387--63756546
27
5.9
27
87
2
205
40
17
18
23
1.91
63762062--63762100
20
2.0
20
100
0
78
20
12
15
51
1.76
63764352--63764480
64
2.0
64
89
0
195
30
19
10
40
1.84
63771236--63771301
33
2.0
33
100
0
132
27
27
15
30
1.96
63775785--63775842
29
2.0
29
96
0
107
24
15
22
37
1.93
63777436--63777557
43
2.8
43
80
4
113
26
18
23
31
1.97
63777393--63777598
86
2.4
85
80
7
202
28
16
23
32
1.96
63783648--63784472
278
3.0
277
84
1
1035
24
22
15
37
1.93
63802984--63803034
22
2.3
22
93
0
84
62
5
21
9
1.47
63804849--63804881
14
2.3
15
89
5
50
51
3
0
45
1.16
63808451--63808495
24
1.9
24
90
4
74
64
4
2
28
1.25
63815509--63815548
5
8.0
5
88
0
62
40
2
17
40
1.63
63815513--63815564
20
2.6
20
87
6
70
40
3
17
38
1.68
63825202--63825231
15
2.0
15
93
0
51
43
33
0
23
1.54
63831120--63831155
17
2.1
18
94
5
65
16
19
0
63
1.30
63831305--63831369
20
3.3
19
83
10
69
66
7
0
26
1.19
63835181--63835253
19
3.9
19
73
22
66
50
2
2
43
1.30
63835557--63835591
17
2.1
17
88
0
52
34
2
20
42
1.66
63845782--63845852
36
2.0
36
100
0
142
42
16
5
35
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63855563--63855641
40
2.0
40
94
0
140
35
34
16
13
1.88
63862749--63862827
40
2.0
40
92
0
131
35
31
17
15
1.91
63868859--63868900
18
2.3
18
92
8
68
33
0
4
61
1.17
63885964--63886036
38
1.9
38
100
0
146
56
8
0
35
1.29
63887091--63887131
20
2.0
20
85
4
55
65
2
0
31
1.05
63892284--63892309
13
2.0
13
100
0
52
46
0
0
53
1.00
63894438--63894467
14
2.1
14
93
0
51
80
10
10
0
0.92
63899353--63899398
22
2.1
22
84
15
60
45
0
4
50
1.21
63899661--63899689
14
2.0
15
93
6
51
27
6
13
51
1.66
63908762--63908807
20
2.3
20
96
0
83
10
39
39
10
1.76
63910317--63910356
17
2.4
17
83
8
55
67
0
30
2
1.04
63912186--63912216
15
2.1
15
93
0
53
32
16
35
16
1.91
63912662--63912702
5
8.2
5
100
0
82
41
0
0
58
0.98
63916435--63916578
27
5.3
27
70
6
94
37
15
25
20
1.93
63916624--63916695
27
2.7
27
82
0
81
40
15
25
19
1.90
63916712--63916766
27
2.0
27
92
0
92
36
20
27
16
1.93
63924320--63924434
18
6.4
18
71
8
74
35
3
1
59
1.25
63924323--63924433
45
2.5
45
86
4
145
36
3
1
57
1.27
63932718--63932758
10
4.3
10
78
9
50
9
12
0
78
0.98
63947867--63947950
31
2.7
31
90
1
134
28
26
15
29
1.96
63947974--63948065
42
2.2
42
90
0
139
34
20
14
30
1.92
63948198--63948307
26
4.3
26
90
2
163
28
22
19
30
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63948198--63948307
51
2.2
50
88
4
159
28
22
19
30
1.98
63948357--63948443
20
4.3
20
92
2
140
31
18
10
40
1.84
63949277--63949378
27
3.8
27
75
17
79
30
7
18
43
1.79
63949253--63949378
54
2.3
54
82
2
137
32
8
17
41
1.80
63949430--63949682
54
4.6
54
72
12
167
35
7
23
33
1.83
63949302--63949630
27
12.2
26
74
13
152
32
8
21
37
1.85
63949499--63949630
55
2.4
53
79
9
133
31
9
21
37
1.85
63949357--63949723
190
1.9
189
83
6
465
32
8
22
35
1.85
63949610--63949711
27
3.8
27
86
1
125
36
8
26
28
1.86
63949584--63949723
54
2.6
53
73
2
127
34
9
23
32
1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279