genome.fa.s8.2.7.7.80.10.50.1000.221.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  221  of  279  ( 33431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72424605--72424683	31	2.5	31	89	0	122	30	24	15	30	1.95
72424889--72425023	51	2.7	52	87	6	190	28	22	20	28	1.99
72424889--72425023	25	5.3	26	81	5	154	28	22	20	28	1.99
72425822--72425913	27	3.4	27	85	8	116	19	26	20	33	1.96
72426028--72426290	81	3.3	81	84	7	322	28	9	20	40	1.84
72425944--72426331	27	14.3	27	77	7	232	31	9	20	38	1.84
72425944--72426331	54	7.1	54	75	6	275	31	9	20	38	1.84
72426095--72426317	107	2.1	108	79	2	243	31	8	20	39	1.82
72426256--72426412	27	5.8	27	86	1	172	40	6	21	32	1.78
72426256--72426412	54	2.9	54	84	1	190	40	6	21	32	1.78
72426271--72426457	81	2.3	81	74	1	178	38	5	20	34	1.77
72428687--72428765	31	2.5	31	95	0	149	26	24	18	30	1.98
72428971--72429106	26	5.3	26	82	3	154	29	22	19	27	1.98
72428971--72429106	52	2.7	51	84	5	188	29	22	19	27	1.98
72429754--72429823	35	2.0	35	97	0	131	30	17	24	28	1.97
72430010--72430368	27	13.2	28	77	9	237	30	9	20	39	1.84
72430010--72430368	54	6.6	53	76	6	272	30	9	20	39	1.84
72430123--72430354	81	2.9	80	88	1	331	28	9	21	40	1.83
72430094--72430490	27	14.7	27	82	4	248	32	8	21	37	1.84
72430305--72430514	81	2.6	80	75	4	215	36	7	21	34	1.82
72434188--72434255	29	2.3	29	85	5	93	27	30	13	27	1.94
72434077--72434404	174	1.9	174	97	0	620	30	24	14	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72434357--72434435	29	2.7	30	82	13	110	29	30	15	25	1.96
72438921--72438966	23	2.0	23	84	12	60	45	10	6	36	1.65
72438928--72438972	23	2.0	23	82	8	56	40	13	8	37	1.76
72444618--72444869	96	2.6	96	99	0	495	44	22	5	28	1.74
72448893--72448948	27	2.1	27	96	0	103	23	16	33	26	1.95
72454348--72454385	18	2.1	18	95	0	67	52	15	13	18	1.74
72454808--72454869	27	2.3	26	80	2	70	24	14	17	43	1.86
72454858--72455070	27	7.9	27	93	1	345	34	15	13	35	1.87
72455408--72455474	16	4.2	16	83	7	82	5	19	19	55	1.63
72455407--72455468	32	1.9	32	90	0	97	6	17	20	54	1.65
72456877--72457009	43	3.1	43	80	2	135	31	24	14	29	1.94
72460536--72460597	29	2.2	29	91	2	99	29	12	27	30	1.93
72473978--72474089	28	4.0	28	77	10	120	29	13	29	27	1.94
72481653--72481696	23	1.9	23	85	0	61	45	11	6	36	1.67
72481797--72481832	11	3.1	12	88	8	56	83	0	16	0	0.65
72481797--72481832	6	6.2	6	87	6	56	83	0	16	0	0.65
72481799--72481833	17	2.1	17	94	0	61	85	0	14	0	0.59
72481847--72481926	39	2.1	39	100	0	160	45	2	31	21	1.65
72485294--72485811	28	18.5	28	99	0	993	32	28	14	25	1.94
72486297--72486444	73	2.0	73	96	0	269	35	18	10	34	1.86
72499893--72500045	27	5.5	28	92	3	238	26	11	27	33	1.91
72499893--72500045	55	2.7	55	92	2	243	26	11	27	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72502361--72502414	21	2.6	21	96	0	99	38	11	27	22	1.88
72504600--72504717	58	2.0	58	93	0	200	40	15	17	26	1.89
72506646--72506751	54	2.0	54	98	0	203	36	11	16	34	1.85
72508029--72508098	25	2.8	25	93	0	113	24	22	25	27	2.00
72509803--72509854	27	2.0	26	84	3	68	17	26	21	34	1.95
72514237--72514313	25	3.2	25	66	17	72	37	6	28	27	1.81
72514224--72514602	47	8.1	47	90	2	530	34	10	27	27	1.89
72514484--72514559	22	3.3	22	66	28	59	34	11	28	25	1.91
72514576--72514758	46	4.0	46	89	0	258	34	7	31	26	1.85
72521450--72521514	27	2.4	27	97	0	121	23	21	16	38	1.93
72522045--72522170	62	2.0	62	98	0	243	23	24	22	30	1.99
72522561--72522951	27	14.5	27	90	0	593	24	21	18	34	1.96
72523004--72523089	27	3.2	27	81	0	82	32	5	24	37	1.79
72523012--72523278	81	3.3	80	80	3	284	39	7	22	30	1.82
72523041--72523278	54	4.4	54	87	2	343	40	7	22	29	1.81
72523041--72523278	27	8.8	27	85	0	305	40	7	22	29	1.81
72523041--72523278	81	2.9	81	87	0	341	40	7	22	29	1.81
72538091--72538129	14	2.6	16	76	16	55	48	25	0	25	1.51
72538725--72538854	23	5.5	22	76	12	109	34	20	19	25	1.96
72542658--72542837	53	3.6	51	78	13	130	31	27	15	25	1.96
72542684--72542837	53	3.0	52	81	5	179	30	29	15	24	1.96
72546939--72547095	6	25.3	6	65	20	65	47	14	19	19	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72546985--72547095	25	4.7	25	73	15	101	46	14	19	18	1.83
72546978--72547064	19	4.3	19	75	19	70	47	12	19	20	1.82
72546948--72547029	31	2.6	31	84	0	101	47	12	20	19	1.81
72546990--72547089	44	2.3	44	92	0	164	46	15	20	19	1.85
72547213--72547320	27	4.0	26	79	5	81	38	20	21	19	1.93
72547936--72548115	54	3.3	54	92	1	281	25	18	19	36	1.94
72547920--72548115	27	7.3	27	85	0	248	25	19	18	36	1.95
72547973--72548144	81	2.1	79	78	6	175	27	17	18	36	1.93
72548156--72548358	27	7.5	26	80	5	172	31	9	19	39	1.83
72548100--72548358	54	4.8	53	75	7	186	31	8	20	38	1.83
72548156--72548358	81	2.5	80	80	4	212	31	9	19	39	1.83
72550255--72550388	6	21.8	6	69	15	78	48	12	18	20	1.80
72550270--72550378	19	5.8	20	71	21	76	45	13	19	21	1.84
72550267--72550388	25	4.7	25	73	11	102	47	13	18	20	1.82
72550267--72550388	55	2.2	56	89	4	185	47	13	18	20	1.82
72550508--72550606	27	3.7	26	80	6	90	36	18	25	20	1.95
72550771--72550835	22	3.0	22	82	8	87	30	24	24	20	1.98
72551211--72551300	27	3.3	27	78	6	110	24	18	20	36	1.95
72551282--72551514	27	8.6	27	84	2	193	30	7	23	39	1.83
72551370--72551540	81	2.1	81	79	4	175	30	9	19	39	1.85
72553401--72553597	6	32.0	6	68	16	109	49	12	17	19	1.78
72553437--72553535	25	3.7	25	78	15	108	49	15	17	18	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72553434--72553569	31	4.4	31	77	10	152	48	13	18	19	1.81
72553530--72553597	25	2.7	25	88	0	100	45	10	20	23	1.81
72553417--72553588	37	4.6	37	77	12	124	48	13	18	19	1.80
72553462--72553597	62	2.2	62	90	0	209	47	12	18	21	1.81
72553400--72553597	31	6.6	31	72	11	144	50	12	17	19	1.78
72553715--72553812	27	3.7	26	81	9	99	38	18	22	20	1.93
72553766--72553822	27	2.1	27	83	6	71	40	24	19	15	1.90
72553981--72554045	22	3.0	22	77	8	69	30	21	26	21	1.98
72554478--72554563	27	3.2	27	91	0	145	24	20	17	37	1.94
72554608--72554787	27	6.7	26	81	7	155	29	10	20	40	1.85
72554609--72554787	54	3.3	53	80	4	180	29	10	20	40	1.85
72562280--72562332	26	2.0	26	100	0	106	30	7	26	35	1.84
72570967--72571002	8	4.5	8	92	0	54	50	22	22	5	1.70
72578438--72578504	34	2.0	34	90	0	107	26	23	23	25	2.00
72578953--72579006	27	2.0	27	88	0	81	40	20	14	24	1.90
72584575--72584636	30	2.1	30	93	0	106	24	40	3	32	1.71
72593273--72593355	43	1.9	43	85	4	114	33	3	0	62	1.12
72594100--72594233	64	2.1	64	87	5	191	34	14	5	44	1.70
72594285--72594338	19	2.8	19	82	0	63	7	33	18	40	1.78
72598839--72598971	64	2.1	64	81	6	155	46	6	13	33	1.69
72599672--72599712	11	3.7	11	86	0	64	19	17	9	53	1.70
72599750--72599813	31	2.1	31	88	2	94	25	4	10	59	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72601266--72601349	35	2.3	36	84	8	100	61	0	5	32	1.20
72601543--72601616	38	2.0	37	91	0	112	29	8	20	40	1.81
72601602--72601827	88	2.5	89	80	5	251	35	9	17	37	1.83
72601819--72601869	20	2.5	20	93	3	84	50	3	5	39	1.45
72606182--72606274	45	2.1	45	97	0	177	33	30	11	24	1.91
72609136--72609270	40	3.3	39	81	8	162	23	13	27	35	1.92
72612141--72612233	42	2.2	42	78	14	102	63	0	32	4	1.14
72612357--72612397	12	3.4	12	86	0	55	29	4	0	65	1.13
72616004--72616098	28	3.4	28	71	16	88	29	24	12	33	1.92
72615972--72616098	57	2.2	56	83	6	159	26	25	14	33	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279