Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  138  of  279  ( 33431 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44602210--44602249
20
2.0
20
85
4
55
40
0
0
60
0.97
44603840--44603881
22
1.9
22
95
0
75
35
2
2
59
1.23
44627397--44627429
5
6.8
5
93
6
50
84
12
0
3
0.72
44657265--44657313
19
2.7
20
78
15
61
48
0
0
51
1.00
44657265--44657317
17
2.9
18
77
8
63
49
0
0
50
1.00
44657984--44658051
25
2.8
23
76
22
68
45
5
0
48
1.26
44659162--44659195
17
2.1
17
88
5
52
61
2
0
35
1.11
44659355--44659400
16
2.6
19
76
10
53
45
0
8
45
1.34
44659652--44659685
8
4.1
8
92
3
50
38
20
0
41
1.53
44662497--44662521
7
3.6
7
100
0
50
84
0
0
16
0.63
44667240--44667282
13
3.3
13
83
9
52
72
0
11
16
1.13
44667236--44667282
17
2.7
18
86
6
69
72
0
10
17
1.12
44667248--44667282
9
4.0
9
88
7
54
71
0
11
17
1.14
44667275--44667320
24
2.0
23
84
12
60
71
10
15
2
1.23
44668559--44668603
15
3.1
15
83
3
56
35
2
13
48
1.54
44677148--44677183
13
2.8
14
84
16
51
27
25
0
47
1.52
44677135--44677175
18
2.2
19
87
12
59
29
24
0
46
1.53
44677298--44677432
39
3.4
38
73
8
101
28
28
20
23
1.99
44677672--44677710
18
2.1
19
85
4
53
51
7
0
41
1.31
44677976--44678216
121
2.0
121
94
0
419
36
16
8
38
1.79
44680823--44680852
12
2.5
12
94
0
51
46
0
6
46
1.29
44680934--44680980
16
2.7
17
80
9
51
63
4
0
31
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44680937--44680985
17
2.7
19
78
15
59
61
8
0
30
1.25
44681202--44681287
3
29.3
3
73
19
60
66
1
3
29
1.16
44681207--44681287
18
4.4
18
77
13
76
66
1
3
28
1.16
44681618--44681716
23
4.5
22
74
14
78
59
30
1
9
1.35
44681614--44681664
21
2.3
23
86
10
79
62
29
0
7
1.23
44681620--44681687
21
3.2
20
83
12
66
58
29
1
10
1.40
44683610--44683642
7
4.7
7
88
11
50
30
54
0
15
1.41
44683610--44683642
13
2.3
15
85
15
52
30
54
0
15
1.41
44684113--44684171
24
2.5
24
97
0
109
47
11
5
35
1.62
44705594--44705633
17
2.4
16
88
8
62
47
0
2
50
1.14
44707607--44707784
95
1.9
95
89
2
277
25
12
23
38
1.90
44711699--44711733
16
2.1
17
94
5
63
22
0
0
77
0.78
44711702--44711743
16
2.6
16
85
11
50
26
0
2
71
0.98
44711731--44711764
9
3.8
9
88
0
50
38
0
8
52
1.33
44712257--44712309
24
2.2
24
86
0
79
58
5
0
35
1.22
44712320--44712395
35
2.2
35
100
0
152
46
14
2
36
1.59
44715773--44715815
3
14.3
3
85
0
50
34
9
0
55
1.32
44717826--44717850
6
4.2
6
100
0
50
52
32
0
16
1.44
44719710--44719736
3
9.0
3
100
0
54
66
0
0
33
0.92
44720891--44720938
20
2.5
20
74
16
55
47
8
8
35
1.64
44721976--44722001
4
6.5
4
100
0
52
76
0
0
23
0.78
44745660--44745685
6
4.3
6
100
0
52
69
0
0
30
0.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44747681--44747825
50
2.9
51
86
2
211
25
20
26
27
1.99
44755529--44755737
31
6.7
31
89
0
301
26
25
19
28
1.99
44755715--44755891
50
3.5
50
88
2
257
26
21
16
35
1.94
44758465--44758502
19
2.0
19
94
0
67
31
7
15
44
1.75
44760196--44760267
21
3.3
23
77
13
80
38
25
22
13
1.91
44761389--44761435
5
9.2
5
97
2
85
57
0
0
42
0.98
44761458--44761486
8
3.6
8
100
0
58
62
0
0
37
0.96
44770969--44771049
40
2.0
40
100
0
162
35
9
19
34
1.85
44773497--44773587
39
2.4
38
77
3
94
50
19
5
24
1.69
44782681--44782728
19
2.4
19
82
6
51
45
2
2
50
1.25
44783481--44783526
22
2.1
21
84
4
56
54
0
8
36
1.32
44800113--44800146
17
2.0
17
94
0
59
47
11
2
38
1.55
44801480--44801543
32
2.0
32
100
0
128
50
18
9
21
1.75
44807183--44807249
28
2.4
27
78
12
64
62
1
7
28
1.31
44811612--44811653
17
2.5
17
76
7
50
11
9
2
76
1.12
44819940--44819970
6
5.2
6
96
0
53
29
35
19
16
1.93
44832798--44832845
21
2.3
21
82
7
62
47
0
0
52
1.00
44832796--44832846
23
2.4
21
77
9
59
49
0
0
50
1.00
44835999--44836034
17
2.2
17
95
5
65
30
5
5
58
1.44
44843652--44843710
26
2.3
26
93
0
100
40
10
6
42
1.65
44850580--44850626
21
2.2
22
92
3
78
21
19
38
21
1.94
44852826--44852877
21
2.4
21
93
3
86
17
0
28
53
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44860473--44860497
12
2.1
12
100
0
50
32
16
24
28
1.96
44861295--44861606
156
2.0
156
100
0
624
42
16
12
28
1.84
44862287--44862333
21
2.2
22
92
3
78
21
38
19
21
1.94
44867547--44867595
25
2.0
24
88
4
71
38
2
0
59
1.09
44876906--44876980
15
5.0
15
66
11
55
45
8
22
24
1.79
44876901--44876994
30
3.1
30
89
6
127
42
7
24
25
1.80
44880951--44881008
30
1.9
30
89
0
89
41
3
24
31
1.71
44881220--44881251
13
2.5
13
94
0
55
31
0
12
56
1.37
44881346--44881587
50
4.7
50
86
4
297
26
24
29
19
1.99
44881346--44881595
100
2.4
103
88
6
364
26
24
29
20
1.99
44885515--44885622
15
7.2
15
69
12
87
43
7
23
25
1.79
44885508--44885622
30
3.8
30
97
0
203
44
6
23
25
1.78
44891789--44891823
17
2.1
17
94
0
61
51
11
14
22
1.74
44892485--44892585
51
2.0
51
82
7
125
41
0
14
42
1.53
44899773--44899814
20
2.0
21
86
9
59
57
9
7
26
1.56
44900752--44900803
25
2.1
25
100
0
104
46
0
15
38
1.46
44905269--44905301
15
2.2
15
100
0
66
39
33
12
15
1.84
44912718--44912768
25
2.0
25
92
0
84
43
15
3
37
1.66
44916279--44916385
39
2.7
39
98
0
205
32
24
5
37
1.79
44921511--44921587
40
1.9
40
100
0
154
27
14
15
42
1.85
44943333--44943379
18
2.6
18
83
10
60
31
12
19
36
1.89
44943369--44943506
18
7.7
17
71
18
84
37
14
12
35
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44943387--44943506
54
2.2
53
85
5
161
35
15
13
35
1.86
44943364--44943503
72
1.9
72
83
8
178
36
14
13
35
1.85
44943544--44943585
18
2.3
18
87
0
57
38
11
16
33
1.86
44945961--44945990
14
2.1
14
100
0
60
33
46
13
6
1.69
44946568--44946602
15
2.3
15
90
9
54
51
22
0
25
1.48
44947267--44947421
41
3.8
41
85
3
161
32
28
18
20
1.96
44947540--44947720
64
2.9
63
89
8
262
41
17
8
32
1.79
44953464--44953498
15
2.3
15
90
9
54
51
22
0
25
1.48
44954163--44954315
41
3.8
40
82
7
164
33
27
18
20
1.96
44954436--44954616
64
2.9
63
89
8
262
41
17
8
32
1.79
44956923--44957038
58
2.0
58
98
0
223
31
24
19
24
1.98
44957650--44957722
30
2.4
29
78
17
78
36
6
1
54
1.36
44966184--44966234
18
2.8
18
75
3
57
70
1
3
23
1.14
44966376--44966436
20
3.1
19
82
13
70
59
3
3
34
1.30
44966982--44967033
25
2.0
28
88
11
83
42
1
3
51
1.31
44971162--44971199
17
2.1
19
90
9
62
36
0
5
57
1.21
44973400--44973433
16
2.1
16
88
0
50
50
14
17
17
1.79
44976236--44976276
21
2.0
21
90
0
64
29
21
29
19
1.98
44978182--44978215
16
2.1
16
88
0
50
50
14
17
17
1.79
44982698--44982741
22
2.1
21
84
16
56
27
20
29
22
1.99
44990882--44990928
18
2.6
19
76
6
53
44
2
4
48
1.34
44991691--44991731
21
2.0
21
100
0
82
43
4
9
41
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45005425--45005459
4
8.8
4
93
0
61
22
0
2
74
0.95
45006423--45006479
23
2.6
21
83
10
69
38
0
1
59
1.08
45006429--45006501
30
2.4
31
82
11
80
38
0
1
60
1.06
45019427--45019485
31
2.0
30
83
6
75
52
0
3
44
1.17
45019430--45019482
23
2.3
24
77
9
56
50
0
3
45
1.19
45026194--45026268
37
2.0
37
100
0
150
34
16
16
33
1.90
45031777--45031953
46
3.8
46
87
1
230
20
24
12
42
1.87
45034086--45034133
11
4.2
11
79
10
51
62
2
0
35
1.07
45043753--45043839
39
2.3
39
94
4
151
37
5
21
34
1.78
45063167--45063242
40
1.9
40
84
12
104
57
2
5
34
1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279