genome.fa.s8.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  117  of  279  ( 33431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37170313--37170367	27	2.0	27	100	0	110	36	27	7	29	1.84
37172281--37172362	40	2.0	40	100	0	164	53	7	4	34	1.50
37173937--37173986	5	9.8	5	80	4	55	52	4	2	42	1.31
37173937--37173987	21	2.5	21	81	12	61	50	5	1	41	1.37
37181843--37181885	21	2.0	22	86	4	61	44	0	0	55	0.99
37185897--37185932	16	2.2	16	90	0	54	19	2	19	58	1.52
37187172--37187393	82	2.7	83	82	7	256	38	4	10	45	1.60
37194197--37194236	20	2.2	18	86	13	55	27	0	2	70	1.01
37197829--37197872	23	1.9	23	85	0	61	47	0	0	52	1.00
37198532--37198570	19	2.1	19	90	0	60	43	5	0	51	1.24
37200883--37200935	3	17.7	3	80	7	63	62	1	5	30	1.29
37201260--37201328	30	2.3	29	80	9	75	4	7	46	42	1.51
37201761--37202046	46	6.6	45	72	12	192	26	19	21	32	1.97
37201676--37202050	170	2.2	170	86	4	504	27	21	20	31	1.97
37224796--37224864	30	2.3	29	80	9	75	4	7	46	42	1.51
37239731--37239779	24	2.0	26	84	8	66	53	4	2	40	1.32
37240278--37240354	38	2.0	38	94	0	136	24	25	5	44	1.75
37240604--37240691	43	2.0	44	95	4	160	29	31	6	31	1.84
37244204--37244247	2	22.0	2	100	0	88	0	50	0	50	1.00
37245765--37245797	2	16.5	2	100	0	66	0	51	0	48	1.00
37263627--37263660	17	2.1	16	88	5	50	2	14	5	76	1.09
37263649--37263699	14	3.6	14	76	7	50	17	13	0	68	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37263849--37263885	14	2.4	17	86	13	53	51	0	0	48	1.00
37264340--37264373	17	1.9	18	94	5	61	35	5	0	58	1.22
37265079--37265138	22	2.7	22	82	7	68	51	1	0	46	1.10
37265706--37265751	14	3.0	16	78	18	53	50	2	0	47	1.13
37268765--37268806	9	4.7	9	85	8	50	47	0	9	42	1.36
37276399--37276437	18	2.2	18	85	0	51	66	7	10	15	1.43
37276445--37276502	27	2.2	27	84	3	73	48	3	0	48	1.18
37281106--37281183	39	2.0	38	97	2	147	12	34	12	38	1.82
37286648--37286710	30	2.1	30	82	5	74	52	1	0	46	1.10
37286674--37286719	24	1.9	24	95	0	83	58	2	0	39	1.10
37289954--37290006	26	2.1	25	83	16	65	24	28	0	47	1.52
37297916--37297953	15	2.4	16	82	4	51	34	0	2	63	1.09
37297910--37297966	8	7.0	8	82	6	53	40	0	1	57	1.09
37298824--37298862	19	2.1	19	85	4	53	41	0	2	56	1.13
37302541--37302809	87	3.1	87	98	0	522	44	14	20	20	1.86
37303776--37303833	29	2.0	29	93	0	98	37	31	8	22	1.84
37314474--37314504	6	5.2	6	92	0	53	16	3	0	80	0.83
37317318--37317368	25	2.0	25	81	7	59	33	13	31	21	1.92
37321824--37322022	40	5.0	40	87	0	263	22	19	29	28	1.98
37322186--37322236	25	2.0	25	81	7	59	33	13	31	21	1.92
37332723--37332846	58	2.1	58	92	0	203	35	20	23	20	1.96
37336140--37336247	40	2.7	40	94	0	180	30	20	27	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37338085--37338132	17	2.8	17	80	3	60	43	8	14	33	1.75
37344511--37344550	19	2.1	19	90	0	62	30	15	2	52	1.55
37349493--37349554	31	2.0	32	87	3	90	20	24	19	35	1.96
37359334--37359381	17	2.8	17	75	15	53	39	8	16	35	1.79
37366131--37366232	28	3.7	27	78	3	96	29	29	13	27	1.94
37371531--37371589	28	2.1	28	84	9	75	37	5	1	55	1.32
37371607--37371739	14	9.1	15	66	22	52	34	3	0	60	1.20
37371607--37371665	13	4.4	13	76	14	57	37	1	0	61	1.07
37371696--37371745	22	2.3	21	82	3	64	34	4	0	62	1.14
37383723--37383853	67	2.0	67	90	0	208	34	14	28	22	1.94
37383880--37383968	21	4.1	21	73	11	90	34	14	32	17	1.91
37383787--37383945	44	3.6	44	92	1	248	32	15	28	23	1.95
37383880--37384016	65	2.1	65	93	0	229	35	14	30	19	1.92
37383836--37384055	109	2.0	110	91	4	356	31	15	30	22	1.95
37383945--37384055	44	2.5	44	85	4	143	31	15	30	22	1.95
37385570--37385612	15	2.7	15	85	7	50	32	2	0	65	1.06
37385572--37385627	17	3.5	16	79	15	55	30	3	0	66	1.09
37385572--37385624	14	3.7	15	72	18	51	30	3	0	66	1.10
37385672--37385721	22	2.3	21	82	3	64	34	4	0	62	1.14
37387334--37387856	262	2.0	262	98	0	1001	40	22	5	31	1.77
37387688--37388270	303	1.9	303	100	0	1166	39	21	5	33	1.77
37388334--37388365	16	2.0	16	93	0	55	9	6	34	50	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37415820--37415893	33	2.2	33	95	0	130	31	12	5	51	1.61
37421671--37421699	12	2.5	12	94	5	51	48	6	0	44	1.29
37422129--37422214	43	2.0	43	84	4	111	27	27	18	25	1.98
37424049--37424108	26	2.3	27	82	8	79	55	25	0	20	1.44
37424313--37424371	30	1.9	31	86	3	84	47	3	20	28	1.66
37424513--37424629	61	1.9	61	96	0	216	39	5	31	23	1.77
37424658--37424711	20	2.7	19	72	8	54	33	0	1	64	1.04
37427396--37427496	28	3.6	27	82	4	112	31	20	25	21	1.98
37427407--37427496	27	3.2	27	82	7	101	32	22	24	21	1.98
37435080--37435169	28	3.2	27	81	7	101	33	22	23	21	1.97
37435088--37435168	27	2.9	27	80	7	83	33	20	23	22	1.97
37435558--37435589	8	4.0	8	91	0	55	3	25	25	46	1.67
37437934--37438057	45	2.8	45	91	0	203	36	20	24	18	1.95
37437934--37438136	45	4.5	45	84	0	190	37	17	24	20	1.94
37438065--37438243	46	3.9	46	90	1	252	40	14	23	21	1.90
37438326--37438375	26	1.9	26	83	0	64	36	2	22	40	1.65
37439949--37440156	42	5.0	40	80	9	193	29	20	20	29	1.98
37440221--37440254	14	2.4	14	95	0	59	52	20	8	17	1.71
37440478--37440548	21	3.4	21	80	0	79	2	45	18	33	1.64
37445998--37446085	9	9.9	9	69	28	64	35	0	20	44	1.52
37446043--37446173	26	5.2	26	88	4	205	31	0	20	48	1.50
37446012--37446202	76	2.5	79	84	8	275	34	1	18	46	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37446212--37446273	20	3.2	20	86	4	90	40	4	8	46	1.55
37448291--37448332	19	2.2	19	86	0	57	23	2	45	28	1.66
37448662--37449170	230	2.2	231	89	1	772	33	19	18	28	1.95
37449588--37449672	7	12.1	7	83	0	80	47	45	0	7	1.30
37449964--37449994	15	2.0	16	93	6	55	38	45	0	16	1.47
37450260--37450308	18	2.5	21	80	9	59	26	2	10	61	1.39
37450861--37450959	39	2.5	38	80	9	101	14	19	22	44	1.86
37451902--37451955	20	2.7	19	72	8	54	33	0	1	64	1.04
37455338--37455401	32	2.0	32	96	0	119	26	35	6	31	1.81
37460051--37460128	38	2.1	38	100	0	156	43	17	12	25	1.85
37464137--37464169	17	1.9	17	88	11	50	69	3	0	27	1.03
37464425--37464482	22	2.6	22	81	7	64	44	17	1	36	1.59
37464473--37464543	35	2.0	36	94	2	126	36	14	9	39	1.79
37464461--37464551	19	4.9	19	88	8	143	37	15	8	38	1.78
37464900--37465099	45	4.5	45	86	1	276	23	29	15	31	1.95
37464900--37465082	89	2.0	90	90	1	287	24	30	15	30	1.95
37465129--37465329	78	2.6	78	84	1	269	23	25	18	31	1.98
37465359--37465627	78	3.2	89	79	12	239	27	23	19	29	1.98
37465362--37465523	89	1.8	87	85	5	227	27	23	18	30	1.98
37465213--37465847	298	2.1	298	94	0	1099	26	23	18	31	1.97
37476207--37476374	46	3.6	47	87	2	232	19	22	14	44	1.86
37476470--37476598	46	2.8	46	93	0	222	25	23	13	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37481154--37481559	46	8.8	46	93	0	598	22	23	14	39	1.91
37485663--37485695	17	1.9	17	88	11	50	69	3	0	27	1.03
37485986--37486076	19	4.9	19	89	8	143	36	16	9	37	1.82
37485998--37486068	35	2.0	36	94	2	126	38	14	9	38	1.79
37486000--37486055	17	3.5	15	88	9	60	35	16	10	37	1.83
37488175--37488262	42	2.1	42	100	0	176	27	29	21	21	1.99
37490684--37490800	3	38.7	3	71	11	87	31	8	0	58	1.34
37490714--37490811	12	8.4	12	77	13	71	30	8	2	59	1.38
37490818--37490860	12	3.6	11	84	9	50	18	6	2	72	1.19
37490827--37490865	12	3.2	12	82	13	53	17	5	5	71	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279