Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  253  of  279  ( 33431 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82396457--82396493
18
2.0
19
89
5
58
51
0
37
10
1.37
82405451--82405501
18
2.9
17
72
16
59
60
21
0
17
1.36
82409498--82409638
70
2.0
70
95
0
255
43
11
8
36
1.71
82409510--82409618
32
3.2
32
64
22
78
44
11
7
35
1.69
82410480--82410525
23
2.0
23
84
12
60
45
10
6
36
1.65
82413554--82413650
40
2.4
40
86
6
126
37
15
29
17
1.91
82413587--82413670
20
4.2
20
74
6
80
41
15
27
15
1.87
82417462--82417530
34
2.0
35
85
2
95
28
20
26
24
1.99
82439468--82439496
15
2.0
15
93
6
51
82
0
17
0
0.66
82439539--82439563
6
4.2
6
100
0
50
84
0
0
16
0.63
82439714--82439771
28
2.1
28
100
0
116
39
13
17
29
1.88
82449352--82449376
3
8.3
3
100
0
50
64
0
36
0
0.94
82451027--82451051
9
2.8
9
100
0
50
44
0
0
56
0.99
82451884--82451945
23
2.7
24
80
11
76
50
14
11
24
1.75
82455416--82455497
27
3.0
26
78
7
83
25
24
14
35
1.94
82459034--82459245
114
1.9
113
82
4
266
28
33
19
17
1.95
82463941--82464065
47
2.7
47
83
0
151
24
15
27
33
1.95
82467451--82467488
19
2.0
20
89
5
60
50
13
0
36
1.42
82468732--82468840
18
5.9
18
68
20
59
37
1
2
57
1.24
82469683--82469752
33
2.1
33
100
0
140
57
8
2
31
1.44
82475585--82475611
6
4.5
6
100
0
54
48
18
0
33
1.49
82475618--82475683
34
1.9
34
90
0
105
25
24
22
27
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82483466--82483498
16
2.1
16
88
11
50
18
0
0
81
0.68
82484267--82484311
23
2.0
23
86
4
65
73
2
0
24
0.95
82484281--82484309
14
2.0
15
93
6
51
75
0
0
24
0.80
82484276--82484337
32
1.9
32
83
6
81
70
4
1
22
1.14
82484276--82484321
22
2.0
23
83
4
58
76
4
0
19
0.96
82489778--82489953
46
3.8
46
79
12
216
20
21
29
28
1.98
82489775--82489946
93
1.8
93
96
0
317
20
21
29
27
1.98
82504475--82504525
23
2.2
24
82
10
70
39
27
17
15
1.90
82508125--82508222
35
2.7
37
87
12
150
37
10
16
35
1.82
82508125--82508215
19
4.9
19
92
8
161
37
10
15
36
1.83
82508125--82508238
19
5.8
22
87
10
96
36
9
15
37
1.81
82508505--82508538
17
2.1
16
88
5
50
29
0
0
70
0.87
82509240--82509264
13
1.9
13
100
0
50
16
8
20
56
1.65
82520041--82520423
78
4.8
78
88
5
543
31
19
24
25
1.98
82520259--82520494
88
2.6
88
93
2
391
31
17
25
25
1.97
82520302--82520449
47
3.3
46
65
21
123
32
18
23
25
1.97
82520439--82520581
44
3.2
45
83
5
184
31
15
28
24
1.95
82520363--82520591
45
5.1
45
75
12
209
30
16
27
25
1.96
82520276--82520626
88
3.9
88
79
11
258
30
16
26
26
1.97
82520942--82521039
35
2.7
37
87
12
150
37
10
16
35
1.82
82520942--82521032
19
4.9
19
92
8
161
37
10
15
36
1.83
82520942--82521055
19
5.8
22
87
10
96
36
9
15
37
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82523208--82523250
18
2.4
18
92
0
68
58
0
0
41
0.98
82523208--82523250
9
4.8
9
76
0
50
58
0
0
41
0.98
82530560--82530586
12
2.2
12
100
0
54
0
62
0
37
0.95
82530648--82530708
25
2.4
27
76
18
67
4
36
3
55
1.38
82530847--82530878
12
2.7
12
95
0
55
56
6
18
18
1.62
82531201--82531226
13
2.0
13
100
0
52
15
7
7
69
1.35
82534610--82534665
21
2.7
21
91
0
85
32
37
7
23
1.82
82536423--82536480
23
2.6
22
81
8
64
41
1
0
56
1.09
82536609--82536642
16
2.1
17
88
5
52
61
0
0
38
0.96
82540405--82540451
24
1.9
25
83
12
62
44
0
4
51
1.21
82541000--82541042
21
2.0
21
86
8
61
55
0
6
37
1.27
82543810--82543844
3
11.7
3
100
0
70
68
0
0
31
0.90
82545291--82545342
17
3.1
16
78
10
52
40
1
0
57
1.10
82545972--82546006
18
1.9
18
94
0
61
54
25
0
20
1.45
82547638--82547764
38
3.3
38
87
2
121
33
17
13
36
1.89
82547656--82547765
38
2.9
38
90
0
157
33
14
13
38
1.86
82549495--82549536
20
2.0
21
90
9
68
38
0
2
59
1.10
82549538--82549624
39
2.3
39
78
9
101
35
4
0
59
1.18
82549558--82549618
20
3.2
20
77
13
56
36
4
0
59
1.19
82549558--82549618
19
3.2
19
77
15
54
36
4
0
59
1.19
82549639--82549807
92
1.8
91
84
3
232
31
8
19
39
1.83
82551820--82551992
92
1.9
91
84
7
233
24
23
21
31
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82553447--82553548
48
2.1
50
96
3
190
32
15
4
47
1.67
82568522--82568685
50
3.3
50
81
0
141
16
35
25
22
1.94
82569797--82570137
131
2.6
130
78
3
349
35
18
17
29
1.93
82570648--82570691
16
2.6
17
85
3
54
61
4
9
25
1.45
82570648--82570684
17
2.2
17
90
0
56
64
2
8
24
1.34
82573916--82574011
27
3.6
27
78
4
86
25
9
4
61
1.44
82573944--82574019
27
2.8
27
83
2
98
23
10
5
60
1.50
82574421--82574561
45
3.1
45
76
8
126
26
21
11
40
1.87
82577611--82577662
26
2.0
25
85
3
68
76
0
1
21
0.87
82577609--82577660
19
2.8
19
79
2
61
78
0
1
19
0.84
82581814--82581880
31
2.2
31
86
7
93
35
11
8
43
1.73
82584734--82584789
18
3.1
18
76
2
67
35
1
1
60
1.17
82584783--82584891
57
1.9
58
81
9
134
33
1
5
58
1.32
82584864--82584904
20
2.0
21
85
4
57
51
0
0
48
1.00
82590679--82590719
21
2.0
21
90
0
64
19
29
21
29
1.98
82594740--82594777
3
12.7
3
100
0
76
65
0
34
0
0.93
82595365--82595457
45
2.0
46
85
2
125
31
6
15
47
1.70
82596578--82596622
23
1.9
24
86
4
65
26
51
2
20
1.59
82606099--82606137
18
2.2
18
95
0
69
48
12
17
20
1.80
82606674--82606728
3
18.3
3
77
7
58
60
1
3
34
1.25
82606678--82606728
18
2.8
18
85
5
68
58
1
3
35
1.28
82608421--82609036
89
6.9
89
70
8
250
29
20
17
32
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82608410--82609266
44
19.1
44
71
7
443
29
20
17
33
1.95
82608735--82609266
133
4.0
132
79
3
463
30
19
16
33
1.94
82625139--82625194
21
2.9
19
84
10
62
80
0
1
17
0.80
82625156--82625186
9
3.3
9
91
8
53
80
0
0
19
0.71
82625145--82625201
26
2.2
25
84
12
71
78
0
1
19
0.83
82625144--82625187
14
2.9
15
86
13
63
79
0
0
20
0.73
82625144--82625187
5
8.6
5
85
14
63
79
0
0
20
0.73
82625148--82625196
19
2.6
19
78
12
64
81
0
0
18
0.69
82625144--82625194
17
3.2
17
83
16
72
80
0
0
19
0.71
82629604--82629643
13
3.1
13
96
0
71
15
35
32
17
1.91
82630647--82630689
3
14.3
3
95
0
77
65
0
2
32
1.06
82631622--82631663
22
2.0
22
85
4
59
14
11
14
59
1.61
82632182--82632248
31
2.2
31
94
0
116
41
8
2
46
1.50
82633306--82633345
19
2.0
20
85
4
55
50
5
0
45
1.23
82640540--82640591
26
2.0
26
96
0
95
42
17
11
28
1.84
82643154--82643178
10
2.5
10
100
0
50
52
8
0
40
1.31
82645343--82645373
14
2.2
14
100
0
62
67
6
12
12
1.40
82645353--82645498
73
2.0
73
86
0
202
30
26
17
25
1.97
82645593--82645620
14
2.0
14
100
0
56
64
7
14
14
1.48
82645426--82645939
88
5.9
88
85
5
569
36
20
16
26
1.94
82645681--82645708
14
2.0
14
100
0
56
64
7
14
14
1.48
82645876--82646405
75
6.9
76
80
10
517
31
22
17
29
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82646104--82646646
163
3.4
162
80
10
581
32
21
17
28
1.96
82645876--82646642
76
9.8
79
74
14
426
32
22
16
28
1.96
82645698--82646637
476
2.0
465
83
8
1169
33
21
16
28
1.95
82650431--82650622
94
2.0
94
97
0
366
18
25
11
44
1.83
82659077--82659101
10
2.5
10
100
0
50
52
8
0
40
1.31
82659911--82659935
10
2.5
10
100
0
50
52
8
0
40
1.31
82658560--82660228
834
2.0
834
99
0
3320
51
7
11
29
1.66
82664048--82664088
17
2.3
18
87
8
66
19
0
12
68
1.21
82664048--82664093
17
2.6
17
86
3
65
21
0
10
67
1.21
82668968--82669055
42
2.1
43
82
2
106
20
21
25
32
1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279