genome.fa.s8.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  118  of  279  ( 33431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37513310--37513354	23	2.0	23	82	8	56	37	8	13	40	1.76
37516815--37516893	39	2.0	39	97	0	149	26	27	21	24	1.99
37525186--37525227	11	3.8	11	84	6	50	78	4	2	14	1.01
37525186--37525227	17	2.5	17	92	7	68	78	4	2	14	1.01
37525186--37525227	23	1.9	21	85	9	57	78	4	2	14	1.01
37526113--37526314	101	2.0	101	97	0	377	23	16	30	29	1.96
37526653--37526715	27	2.3	27	91	0	99	23	26	11	38	1.89
37526616--37526815	101	2.0	100	94	1	346	28	19	11	41	1.86
37526754--37526869	27	4.3	26	77	6	117	30	22	6	40	1.80
37526768--37526869	54	1.9	53	85	2	141	31	21	5	41	1.77
37526861--37527024	27	6.1	26	72	12	93	40	20	10	28	1.85
37526859--37527000	54	2.7	53	74	8	126	39	20	11	28	1.87
37526898--37527304	27	14.8	28	71	10	180	40	18	9	31	1.82
37526918--37527305	195	2.0	195	94	0	688	39	17	9	32	1.83
37527322--37527395	27	2.7	27	80	12	80	39	20	18	21	1.93
37527335--37527399	27	2.4	28	87	5	89	36	18	23	21	1.95
37527586--37527921	168	2.0	169	92	1	568	30	13	28	27	1.94
37528376--37528501	25	4.8	26	76	13	132	24	24	26	24	2.00
37528376--37528488	56	2.0	56	100	0	226	26	23	27	23	2.00
37528433--37528528	25	3.9	23	82	8	84	26	23	23	26	2.00
37528376--37528526	56	2.9	50	85	9	153	25	23	25	24	2.00
37528722--37528860	31	4.5	31	90	0	206	28	17	26	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37529080--37529189	35	3.2	35	60	17	84	22	6	18	52	1.67
37529059--37529211	69	2.2	69	94	2	261	22	6	15	54	1.64
37529964--37530015	20	2.6	20	96	0	95	17	36	30	15	1.91
37532709--37532743	17	2.0	18	88	5	54	65	5	5	22	1.36
37543781--37543821	19	2.2	19	90	0	64	63	7	2	26	1.33
37543830--37543862	3	11.0	3	100	0	66	66	0	0	33	0.92
37545391--37545515	42	2.9	42	79	5	135	33	27	17	21	1.96
37545902--37545926	8	3.1	8	100	0	50	24	24	0	52	1.48
37551565--37551614	25	2.0	25	100	0	100	40	8	12	40	1.72
37552042--37552111	25	2.8	25	75	10	72	35	24	21	18	1.95
37552072--37552167	25	3.8	25	73	10	70	37	18	23	19	1.94
37554354--37554565	40	5.3	40	85	3	259	23	19	27	28	1.98
37556400--37556438	19	2.1	19	100	0	78	48	15	0	35	1.45
37558244--37558277	9	3.8	9	84	0	50	20	14	0	64	1.28
37558244--37558284	18	2.3	18	86	0	55	24	12	0	63	1.28
37560086--37560128	21	2.0	21	86	0	59	32	25	11	30	1.91
37562822--37562853	4	8.0	4	100	0	64	25	0	0	75	0.81
37567119--37567179	31	2.0	31	90	0	95	52	4	4	37	1.45
37568132--37568167	19	1.9	19	88	5	56	36	2	0	61	1.11
37575711--37575749	19	2.1	19	95	0	69	15	43	5	35	1.69
37585318--37585345	7	4.0	7	100	0	56	28	0	0	71	0.86
37585424--37585452	14	2.1	14	100	0	58	41	6	17	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37586358--37586424	31	2.2	29	80	15	73	43	2	7	46	1.47
37588882--37588949	18	3.8	18	73	9	52	39	1	1	57	1.17
37590152--37590184	16	2.0	17	88	5	50	48	6	0	45	1.27
37593428--37593463	16	2.2	16	90	9	56	27	0	2	69	1.02
37593431--37593463	15	2.1	16	88	5	50	27	0	3	69	1.03
37618745--37618808	24	2.7	24	85	0	92	29	15	4	50	1.65
37620273--37620330	25	2.3	25	72	0	71	24	25	15	34	1.95
37624124--37624183	23	2.6	23	91	2	93	26	13	11	48	1.76
37627990--37628148	37	4.3	37	78	4	144	38	29	13	18	1.89
37628486--37628510	7	3.6	7	100	0	50	32	12	0	56	1.36
37631878--37631961	31	2.7	31	90	1	134	27	25	16	30	1.97
37631985--37632076	42	2.2	42	92	0	148	34	21	14	29	1.93
37632221--37632318	26	3.8	26	94	1	171	26	23	23	26	2.00
37633126--37633212	27	3.2	27	88	3	122	18	26	21	33	1.96
37633243--37633557	27	11.6	27	76	4	231	30	9	20	39	1.84
37633354--37633551	81	2.5	81	91	0	308	28	8	22	40	1.82
37633554--37633689	54	2.5	54	80	0	164	37	9	21	31	1.86
37633573--37633675	27	3.8	27	89	0	152	39	8	22	29	1.84
37635542--37635569	2	14.0	2	100	0	56	50	0	0	50	1.00
37636007--37636124	51	2.3	51	88	2	166	40	11	22	25	1.88
37636434--37636475	15	2.9	14	82	10	57	35	0	11	52	1.38
37636877--37636938	21	3.0	21	85	0	79	14	22	27	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37638174--37638296	32	3.8	32	80	9	115	33	12	22	31	1.91
37638179--37638289	33	3.4	33	83	6	118	33	10	23	32	1.89
37646836--37646909	16	4.7	16	73	9	71	68	4	0	27	1.07
37646813--37646909	47	2.0	48	98	2	187	64	4	0	30	1.12
37648871--37649002	40	3.3	40	86	2	176	26	28	21	23	1.99
37648987--37649064	40	1.9	41	82	10	97	26	28	21	23	1.99
37652052--37652088	18	1.9	18	89	10	56	54	0	5	40	1.24
37652862--37652894	16	2.0	17	88	5	50	42	0	21	36	1.53
37653657--37653742	44	2.0	44	88	4	129	22	22	24	31	1.98
37657089--37657140	25	2.1	25	85	0	68	38	7	13	40	1.73
37658496--37658536	3	13.7	3	100	0	82	65	0	0	34	0.93
37661714--37661787	37	2.0	37	94	0	130	33	13	24	28	1.93
37663428--37663588	24	6.6	24	69	19	77	38	22	22	16	1.93
37665660--37665692	17	2.0	17	94	5	59	36	15	0	48	1.45
37665988--37666129	46	3.1	45	81	3	167	18	23	14	43	1.87
37668977--37669059	28	2.9	28	87	1	121	20	4	31	43	1.73
37668980--37669073	23	3.6	23	72	25	80	17	5	34	43	1.71
37670685--37670843	27	5.9	27	80	11	175	34	21	24	19	1.96
37670703--37670846	54	2.7	54	93	2	236	34	22	24	18	1.96
37672312--37672553	121	2.0	121	98	0	466	31	20	6	41	1.78
37672518--37672573	26	2.2	26	93	0	94	35	23	7	33	1.82
37676328--37676413	43	2.0	43	100	0	172	39	9	30	20	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37682011--37682097	36	2.4	37	79	11	99	24	2	10	63	1.38
37685098--37685126	14	2.1	14	93	6	51	27	10	0	62	1.28
37699892--37699935	22	2.0	23	95	4	81	38	25	18	18	1.92
37700121--37700200	28	2.8	29	86	3	117	47	32	3	16	1.64
37702320--37702402	40	2.1	40	97	0	157	38	22	4	33	1.76
37704855--37704892	14	2.7	14	88	8	51	0	28	0	71	0.87
37704854--37704895	19	2.3	19	88	8	61	0	28	0	71	0.86
37704946--37704975	14	2.1	14	93	0	51	10	10	0	80	0.92
37707057--37707135	22	3.5	22	75	10	86	40	18	22	17	1.91
37707057--37707209	47	3.2	47	87	4	200	36	18	24	19	1.95
37707035--37707209	25	7.4	24	79	10	164	36	17	25	20	1.94
37708043--37708129	25	3.5	25	92	4	140	19	26	19	34	1.96
37708043--37708217	47	3.7	46	81	6	167	20	25	18	36	1.94
37708043--37708175	25	5.4	25	76	10	114	21	24	18	36	1.95
37723709--37723733	3	8.3	3	100	0	50	68	0	0	32	0.90
37723779--37723850	37	1.9	37	83	10	94	58	6	5	29	1.47
37727823--37727863	9	4.3	10	87	12	52	75	0	0	24	0.80
37727822--37727859	5	7.4	5	91	8	51	76	0	0	23	0.79
37729819--37729864	23	2.0	23	84	12	60	45	10	6	36	1.65
37729826--37729870	23	2.0	23	82	8	56	40	13	8	37	1.76
37735189--37735229	9	4.3	10	87	12	52	75	0	0	24	0.80
37735188--37735225	5	7.4	5	91	8	51	76	0	0	23	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37740304--37740334	16	1.9	16	93	0	53	35	6	3	54	1.42
37751960--37752252	46	6.7	46	77	12	260	32	21	20	26	1.97
37752003--37752479	44	11.0	44	69	14	217	32	21	21	24	1.98
37752003--37752507	174	2.9	175	81	6	451	32	21	21	24	1.98
37752176--37752507	87	3.8	87	89	2	441	31	23	21	23	1.98
37754076--37754175	3	33.3	3	73	11	71	28	7	3	62	1.36
37754093--37754175	12	6.6	12	81	8	85	30	8	2	59	1.40
37754311--37754379	34	2.0	34	85	5	93	36	5	1	56	1.32
37759831--37759857	2	13.5	2	100	0	54	0	48	0	51	1.00
37760681--37760714	6	5.7	6	96	0	59	47	17	2	32	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279