genome.fa.s8.2.7.7.80.10.50.1000.244.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  244  of  279  ( 33431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79402287--79402387	40	2.4	41	77	11	107	26	26	18	27	1.98
79406812--79406843	15	2.1	15	94	0	55	37	15	21	25	1.93
79408661--79408795	45	3.1	43	86	10	186	40	23	16	19	1.90
79408605--79408791	42	4.4	42	83	11	213	38	25	18	18	1.93
79415778--79415953	46	3.8	46	77	10	187	22	20	27	29	1.98
79419177--79419365	42	4.5	42	79	8	170	40	24	17	16	1.90
79420974--79421082	54	2.0	54	89	0	164	38	20	18	22	1.93
79424687--79424754	20	3.3	20	78	12	66	57	7	0	35	1.27
79424719--79424766	24	2.0	24	88	8	71	54	2	0	43	1.12
79424736--79424781	18	2.6	17	83	12	58	63	2	0	34	1.07
79425326--79425464	59	2.3	59	81	4	163	25	15	17	41	1.89
79426629--79426694	19	3.4	19	83	8	80	54	7	1	36	1.38
79434224--79434303	42	1.9	42	86	0	115	22	33	10	33	1.87
79447005--79447083	40	2.0	40	89	0	122	25	18	12	43	1.86
79456309--79456429	59	2.1	59	100	0	242	27	22	7	42	1.80
79456764--79456876	57	2.0	57	91	3	183	15	30	20	32	1.94
79457087--79457212	63	2.0	63	96	0	234	19	26	19	34	1.96
79466315--79466390	30	2.6	29	78	15	84	30	7	3	57	1.45
79466513--79466549	17	2.2	17	90	0	56	32	18	0	48	1.49
79466711--79466740	14	2.1	14	93	0	51	60	0	10	30	1.30
79469519--79469560	22	1.9	22	90	0	66	38	0	19	42	1.51
79471471--79471508	12	3.1	13	88	11	62	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79471744--79471791	22	2.2	22	84	0	60	77	12	2	8	1.08
79474260--79474306	22	2.1	21	84	7	58	36	8	4	51	1.52
79476799--79476851	22	2.4	22	75	12	54	41	0	1	56	1.10
79476822--79476860	15	2.4	16	87	8	53	35	0	0	64	0.94
79477946--79478023	38	2.1	37	81	13	88	48	3	1	46	1.28
79479560--79479623	16	3.9	16	74	11	58	29	1	4	64	1.23
79479553--79479615	32	1.9	32	83	3	81	28	1	3	66	1.16
79480377--79480419	19	2.3	19	87	0	59	74	13	2	9	1.16
79483035--79483067	16	2.1	16	88	5	50	69	0	0	30	0.88
79483958--79483993	11	3.3	11	88	0	54	22	33	0	44	1.53
79483957--79484010	22	2.4	22	78	12	65	25	27	0	46	1.53
79483958--79484012	11	4.9	11	78	17	51	25	27	0	47	1.52
79485587--79485623	19	1.9	19	88	0	56	43	2	16	37	1.62
79485774--79485840	3	21.7	3	76	14	57	37	1	2	58	1.23
79485949--79486434	143	3.4	143	99	0	954	44	2	11	41	1.52
79486938--79486994	15	3.9	15	81	2	71	36	0	12	50	1.40
79489862--79489909	20	2.5	20	86	3	62	64	2	6	27	1.28
79489901--79489937	15	2.5	15	87	12	51	56	10	0	32	1.34
79489910--79489961	15	3.7	15	77	15	56	44	13	0	42	1.44
79493260--79493332	22	3.1	22	76	16	67	67	0	2	30	1.05
79493292--79493354	3	22.3	3	76	23	66	66	0	0	33	0.92
79493297--79493360	27	2.3	27	84	7	85	65	0	1	32	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79493257--79493364	5	20.6	5	73	14	67	66	0	2	30	1.06
79499464--79499553	45	2.0	45	93	0	153	33	16	30	20	1.94
79499794--79499841	20	2.5	20	86	3	62	64	2	6	27	1.28
79499833--79499869	15	2.5	15	87	12	51	56	10	0	32	1.34
79499842--79499893	15	3.7	15	77	15	56	44	13	0	42	1.44
79500865--79500904	19	2.1	19	95	0	71	57	5	5	32	1.42
79501451--79501509	21	2.9	21	85	9	86	74	3	1	20	1.05
79501451--79501518	22	3.2	22	85	8	88	72	5	2	19	1.19
79505090--79505133	14	3.1	14	84	12	63	45	25	0	29	1.54
79506933--79506966	17	2.0	17	94	0	59	26	5	50	17	1.69
79512631--79513534	451	2.0	451	98	0	1727	32	20	19	28	1.97
79516842--79516898	21	2.7	20	76	10	51	8	17	1	71	1.19
79517121--79517167	20	2.3	20	82	14	60	51	2	0	46	1.13
79517107--79517161	25	2.2	25	83	9	67	50	1	0	47	1.11
79518565--79518600	18	2.0	18	100	0	72	11	22	27	38	1.88
79521123--79521155	17	1.9	17	88	11	50	48	18	0	33	1.48
79521740--79521786	20	2.3	20	82	14	60	46	4	0	48	1.21
79525190--79525321	40	3.3	40	87	3	160	26	27	21	25	1.99
79525190--79525371	79	2.3	80	81	7	201	25	27	21	25	1.99
79551663--79551765	51	2.0	52	94	5	183	25	8	37	28	1.85
79552251--79552407	27	5.8	27	83	0	197	29	22	8	38	1.84
79552224--79552407	81	2.3	81	87	0	260	31	22	8	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79552400--79552662	27	9.8	27	83	3	176	38	20	14	26	1.91
79552569--79552704	27	5.0	27	90	0	209	34	22	21	22	1.97
79552906--79552975	25	2.8	25	88	0	104	27	24	22	25	2.00
79552905--79552988	25	3.4	24	80	8	89	29	21	22	26	1.99
79555324--79555658	27	12.4	27	80	6	160	34	20	9	35	1.85
79555343--79555499	54	2.9	54	86	0	215	29	22	7	40	1.82
79555343--79555499	81	1.9	81	89	0	242	29	22	7	40	1.82
79555330--79555510	81	2.2	80	82	3	236	32	22	7	37	1.83
79555492--79555644	54	2.8	54	85	0	189	39	19	9	30	1.84
79555658--79555794	27	5.1	27	95	0	220	32	18	22	25	1.97
79555998--79556067	25	2.8	25	80	4	79	28	21	21	28	1.99
79558397--79558763	27	13.7	27	81	4	80	34	20	9	34	1.86
79558436--79558592	54	2.9	54	88	1	217	27	23	9	39	1.86
79558423--79558603	81	2.2	81	82	1	238	30	23	8	37	1.85
79558571--79558680	54	2.0	54	84	3	141	40	20	9	30	1.83
79558585--79558734	54	2.8	53	82	5	176	40	18	10	31	1.84
79558753--79558976	27	8.3	27	88	0	322	35	20	20	24	1.96
79559199--79559267	25	2.8	24	86	2	93	24	23	24	27	2.00
79559199--79559280	24	3.4	24	84	5	94	28	20	24	26	1.99
79561568--79561624	25	2.3	26	85	11	75	38	14	10	36	1.80
79570955--79571024	25	2.8	25	86	0	95	34	21	22	21	1.97
79577147--79577221	27	2.8	27	83	0	87	34	14	21	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79577254--79577418	27	6.1	27	77	8	122	41	20	8	29	1.82
79577254--79577427	54	3.2	53	80	4	163	42	20	8	29	1.80
79577243--79577427	81	2.3	81	77	9	189	41	20	8	29	1.82
79577334--79577465	27	4.9	27	81	6	115	45	18	7	28	1.77
79577296--79577501	54	3.8	54	78	6	184	40	20	10	28	1.85
79577362--79577501	27	5.1	27	79	10	97	39	17	12	30	1.87
79577758--79577879	41	3.0	42	80	3	149	24	22	25	27	2.00
79581524--79581567	22	2.0	23	90	4	72	54	4	0	40	1.21
79584686--79584739	24	2.2	24	84	12	67	29	37	16	16	1.91
79588192--79588614	27	15.8	27	86	2	521	30	22	7	40	1.80
79588269--79588798	27	19.6	27	86	1	240	33	21	7	36	1.83
79588750--79588810	27	2.3	27	85	2	79	39	14	13	32	1.85
79588804--79588988	27	7.0	27	81	12	197	35	17	20	26	1.95
79588803--79588988	81	2.3	80	82	12	231	34	18	20	26	1.95
79588803--79588974	54	3.2	54	89	1	256	34	19	20	25	1.96
79589194--79589288	25	3.8	25	92	0	154	25	24	23	27	2.00
79596028--79596061	16	2.2	15	89	5	50	26	0	0	73	0.83
79600490--79600515	6	4.3	6	100	0	52	15	15	0	69	1.20
79602728--79603003	48	5.8	48	90	1	333	26	28	17	27	1.98
79603783--79603817	14	2.6	13	82	8	52	14	5	11	68	1.37
79609964--79610166	47	4.3	47	88	2	284	32	8	31	27	1.87
79610017--79610138	22	5.3	22	63	21	61	33	10	29	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79622355--79622414	30	2.0	30	86	0	84	40	8	23	28	1.83
79632260--79632291	14	2.4	13	90	10	55	62	12	6	18	1.50
79635563--79635685	49	2.5	49	93	1	203	29	26	17	26	1.98
79639128--79639172	21	2.3	19	79	17	56	60	4	8	26	1.46
79639133--79639181	21	2.4	20	86	6	71	61	6	10	22	1.50
79645470--79645731	48	5.5	47	83	3	285	27	29	16	26	1.97
79645499--79645731	95	2.5	96	85	2	301	27	29	16	26	1.97
79645502--79645747	48	5.1	48	86	2	291	27	28	16	27	1.97
79661050--79661089	19	2.1	19	100	0	80	42	10	10	37	1.72
79664481--79664653	43	4.0	44	79	8	187	32	23	16	26	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279