Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  166  of  279  ( 33431 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55099713--55099979
86
3.1
86
99
0
527
40
4
7
47
1.53
55102302--55102510
92
2.3
91
85
5
269
45
3
4
46
1.41
55102533--55103058
120
4.4
120
96
0
955
43
2
4
48
1.37
55102767--55102801
18
2.0
17
88
5
52
45
0
0
54
0.99
55102887--55102921
18
2.0
17
88
5
52
45
0
0
54
0.99
55103007--55103041
18
2.0
17
88
5
52
45
0
0
54
0.99
55103206--55103296
45
2.0
45
85
2
121
37
28
6
27
1.82
55103277--55103345
16
4.2
16
92
3
120
36
37
1
24
1.65
55103277--55103345
33
2.1
32
94
2
120
36
37
1
24
1.65
55107636--55107660
13
1.9
13
100
0
50
48
8
12
32
1.69
55118535--55118568
17
2.1
16
88
5
50
44
8
2
44
1.50
55119006--55119041
16
2.2
16
90
0
54
55
0
8
36
1.30
55119394--55119462
22
2.8
26
74
12
65
21
4
5
68
1.29
55138349--55138407
24
2.5
24
77
5
57
54
3
0
42
1.17
55141503--55141537
2
17.5
2
100
0
70
0
48
0
51
1.00
55146113--55146271
78
2.0
78
96
0
291
33
8
26
31
1.87
55149998--55150068
28
2.5
28
80
13
83
47
5
15
30
1.68
55155541--55155582
22
2.0
21
85
4
57
42
2
26
28
1.67
55155943--55155976
6
5.7
6
96
0
50
32
35
8
23
1.86
55156840--55156868
3
9.7
3
100
0
58
0
34
0
65
0.93
55158931--55159041
52
2.1
52
90
3
170
35
9
19
35
1.85
55159354--55159453
49
2.0
49
100
0
200
38
20
19
23
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55162164--55162441
76
3.5
78
89
3
398
46
10
8
34
1.70
55162461--55162486
7
3.7
7
100
0
52
88
0
0
11
0.52
55169915--55169941
3
9.0
3
100
0
54
33
0
0
66
0.92
55170541--55170614
28
2.7
29
79
8
82
62
1
5
31
1.26
55170546--55170615
9
7.7
9
75
12
54
64
1
4
30
1.21
55170551--55170600
19
2.7
18
81
6
55
60
2
2
36
1.20
55173844--55173908
33
2.0
33
84
6
87
61
3
1
33
1.21
55175034--55175091
30
2.0
30
93
6
102
36
13
5
44
1.66
55195045--55195148
51
2.0
54
84
7
142
35
11
0
52
1.38
55198330--55198379
16
2.8
18
76
14
59
54
2
2
42
1.23
55200054--55200086
16
2.1
15
94
5
57
42
6
0
51
1.26
55204211--55204257
24
1.9
25
86
4
69
21
0
8
70
1.14
55207079--55207153
35
2.1
35
85
0
96
29
21
20
29
1.98
55216429--55216464
17
2.1
17
100
0
72
38
5
8
47
1.57
55221720--55221774
29
1.9
28
85
3
74
41
0
1
56
1.10
55226256--55226294
20
1.9
21
89
5
62
33
5
5
56
1.43
55231589--55231634
22
2.1
22
100
0
92
30
17
26
26
1.97
55237740--55237787
24
2.0
24
95
0
87
22
33
18
25
1.97
55248620--55248664
21
2.2
20
88
4
63
28
17
24
28
1.97
55252477--55252521
21
2.2
20
92
4
72
28
26
17
26
1.98
55252552--55252617
31
2.2
31
83
8
82
24
9
18
48
1.76
55252739--55252805
35
1.9
35
93
0
116
44
11
2
40
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55253734--55253787
16
3.4
16
78
14
58
37
0
0
62
0.95
55260832--55260890
2
29.5
2
96
0
109
52
0
47
0
1.00
55264783--55264813
15
2.1
15
100
0
62
19
6
16
58
1.59
55267645--55267701
18
3.1
18
87
2
78
36
3
1
57
1.26
55272183--55272270
44
2.0
44
100
0
176
36
4
29
29
1.77
55276713--55276839
35
3.6
35
77
4
121
33
9
22
33
1.87
55280462--55280498
20
1.9
20
88
5
58
40
0
8
51
1.32
55282005--55282867
429
2.0
429
99
0
1692
39
11
18
29
1.87
55283038--55283266
46
5.0
46
87
0
278
40
15
24
20
1.90
55303674--55303819
37
4.0
37
93
1
242
24
21
16
37
1.93
55303783--55304051
46
5.6
46
84
10
331
28
21
14
34
1.93
55303826--55304045
52
4.3
52
84
8
290
27
22
14
35
1.93
55303783--55304051
98
2.7
98
92
0
448
28
21
14
34
1.93
55307178--55307381
49
4.0
50
83
10
241
32
29
13
24
1.94
55307262--55307380
58
2.0
59
98
1
231
31
31
13
23
1.93
55307271--55307361
28
3.2
28
66
22
80
27
31
15
25
1.95
55308700--55308804
37
2.9
37
90
2
160
24
22
17
35
1.95
55308768--55309179
52
8.2
52
79
10
475
28
22
14
34
1.93
55308818--55309185
46
7.7
46
80
11
416
29
22
14
34
1.93
55308767--55309185
98
4.3
98
96
0
741
28
22
14
34
1.93
55312349--55312410
31
2.1
30
81
6
72
35
22
0
41
1.54
55313178--55313271
10
9.2
10
68
21
52
3
15
8
72
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55313203--55313292
22
4.3
21
71
16
71
5
15
10
68
1.35
55313165--55313311
61
2.4
61
95
1
258
4
16
9
70
1.30
55313332--55313357
3
8.7
3
100
0
52
65
0
0
34
0.93
55313356--55313380
3
8.3
3
100
0
50
36
0
0
64
0.94
55313481--55313506
3
8.7
3
100
0
52
65
0
0
34
0.93
55314870--55314949
40
2.0
40
100
0
160
32
12
20
35
1.90
55323608--55323667
14
4.1
15
77
14
54
3
11
8
76
1.12
55323807--55323873
3
22.7
3
82
8
57
55
2
1
40
1.24
55324384--55324427
15
3.0
14
80
9
52
27
0
4
68
1.09
55325316--55325354
19
2.1
19
100
0
78
15
10
0
74
1.07
55325319--55325363
19
2.4
19
88
7
65
20
11
0
68
1.19
55329820--55329888
34
2.0
34
100
0
138
37
8
11
42
1.72
55332140--55332252
42
2.7
42
91
0
172
28
25
15
30
1.95
55332181--55332342
47
3.6
47
84
5
156
29
24
14
30
1.95
55332364--55332574
31
6.8
31
93
0
341
25
26
21
27
1.99
55332550--55332726
50
3.5
50
89
3
266
25
23
17
33
1.96
55335105--55335274
46
3.7
46
77
13
177
30
29
19
20
1.97
55335112--55335284
93
1.9
93
92
0
292
28
29
20
21
1.98
55338624--55338683
18
3.3
18
77
9
77
23
25
20
31
1.98
55338685--55338742
30
1.9
30
100
0
116
27
24
17
31
1.97
55338751--55338787
18
2.1
18
100
0
74
5
10
27
56
1.55
55340809--55340891
43
1.9
43
92
0
139
46
16
6
30
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55340807--55340899
43
2.2
43
86
3
134
49
15
6
29
1.69
55340921--55340960
19
2.2
18
90
4
62
42
17
2
37
1.63
55343463--55343534
36
2.0
36
100
0
144
41
8
22
27
1.82
55345780--55345813
12
2.8
12
86
0
50
5
50
32
11
1.63
55345959--55346031
18
4.1
18
80
0
65
58
5
4
31
1.39
55362807--55362860
24
2.2
24
96
0
99
24
18
11
46
1.81
55366779--55366816
20
1.9
20
84
10
51
52
10
5
31
1.58
55383304--55383368
31
2.1
30
83
8
78
41
1
13
43
1.54
55385319--55385351
3
11.0
3
100
0
66
33
0
33
33
1.58
55385874--55385937
29
2.2
31
83
8
80
31
7
12
48
1.69
55391163--55391190
3
9.3
3
100
0
56
67
0
0
32
0.91
55391526--55391569
22
2.0
23
90
4
72
18
22
20
38
1.93
55392992--55393025
17
2.0
17
88
11
52
32
0
8
58
1.29
55402876--55402903
6
4.7
6
100
0
56
0
32
17
50
1.47
55404230--55404268
20
2.0
20
85
10
53
64
2
20
12
1.40
55412154--55412195
20
2.1
20
100
0
84
50
4
14
30
1.63
55420480--55420728
130
1.9
131
89
0
383
30
19
20
28
1.97
55422731--55422760
14
2.1
15
93
6
53
83
0
13
3
0.77
55423968--55424006
15
2.7
15
84
4
53
74
0
23
2
0.94
55425579--55425628
24
2.1
23
85
3
64
54
18
2
26
1.54
55425579--55425628
23
2.1
24
85
10
68
54
18
2
26
1.54
55426621--55426661
21
2.0
21
85
9
57
34
0
4
60
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55427494--55427569
33
2.3
33
97
0
143
28
11
17
42
1.84
55433108--55433132
6
4.2
6
100
0
50
84
0
0
16
0.63
55439384--55439466
40
2.1
40
100
0
166
20
12
20
46
1.82
55440035--55440087
26
2.0
26
100
0
106
28
3
18
49
1.65
55449992--55450016
12
2.1
12
100
0
50
52
24
8
16
1.70
55452932--55452964
12
2.6
13
90
4
50
63
3
0
33
1.10
55452991--55453047
21
2.8
19
75
17
53
49
1
1
47
1.22
55462361--55462405
6
7.7
6
92
2
65
0
51
8
40
1.33
55467422--55467474
19
2.8
19
79
0
61
62
1
3
32
1.24
55469548--55469593
22
2.2
21
84
7
58
52
8
6
32
1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279