genome.fa.s8.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  143  of  279  ( 33431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46470130--46470207	38	2.1	36	81	9	86	57	23	0	19	1.40
46470201--46470258	21	2.7	21	78	2	62	55	20	1	22	1.53
46470239--46470376	21	6.2	21	72	20	66	56	26	0	17	1.41
46470242--46470287	23	2.0	24	91	4	76	58	28	0	13	1.35
46470254--46470297	15	2.8	15	82	6	52	61	25	0	13	1.32
46470509--46470573	7	9.0	7	76	6	67	56	23	3	16	1.54
46470493--46470599	29	3.7	29	79	8	76	55	22	2	19	1.56
46470587--46470644	16	3.7	16	69	4	55	55	22	1	20	1.53
46470713--46470758	24	2.0	23	91	4	74	63	23	0	13	1.30
46470780--46470906	15	8.5	15	68	14	50	55	25	0	18	1.43
46470998--46471105	23	4.7	23	83	2	128	54	26	2	15	1.55
46479764--46479798	17	2.1	17	94	0	61	8	22	17	51	1.72
46480288--46480836	84	6.6	84	82	6	614	40	10	32	16	1.83
46488292--46488356	33	2.0	33	84	6	87	38	9	41	10	1.72
46488888--46488943	28	2.0	28	96	0	103	28	17	41	12	1.86
46494786--46494919	48	2.8	46	83	11	164	32	8	5	52	1.57
46496541--46496583	18	2.4	18	92	0	68	20	27	9	41	1.83
46499405--46499442	17	2.3	17	90	4	60	78	0	15	5	0.91
46506857--46507175	126	2.5	126	88	2	462	28	16	18	36	1.93
46507120--46507235	61	1.9	60	89	1	178	31	15	20	32	1.94
46506991--46507361	187	2.0	186	90	1	582	29	16	19	34	1.94
46507180--46507424	126	1.9	126	90	0	391	28	18	18	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46507956--46508006	16	2.8	19	77	22	65	43	21	0	35	1.53
46508096--46508154	16	3.8	15	73	13	57	52	27	0	20	1.47
46510136--46510515	54	7.0	54	100	0	760	36	7	20	35	1.81
46519578--46519671	46	2.1	45	95	2	170	45	6	8	39	1.60
46520882--46520942	32	1.9	32	83	12	81	44	24	6	24	1.77
46520976--46521038	32	2.0	32	87	6	92	44	23	6	25	1.77
46520871--46521066	96	2.0	97	94	1	340	43	19	11	26	1.84
46537064--46537088	13	1.9	13	100	0	50	80	0	8	12	0.92
46538324--46538894	87	6.6	87	92	2	801	28	21	24	24	1.99
46538324--46538894	173	3.3	174	89	2	801	28	21	24	24	1.99
46538324--46538985	174	3.8	175	86	4	553	28	21	24	24	1.99
46538933--46539354	170	2.5	171	83	6	548	30	20	21	27	1.98
46539293--46539454	87	1.9	87	85	2	227	30	20	23	25	1.99
46539117--46539540	218	2.0	214	79	6	455	31	20	22	25	1.98
46539635--46539823	86	2.2	86	92	0	315	32	22	22	22	1.98
46549884--46549943	29	2.1	29	96	0	111	56	11	8	23	1.61
46554459--46554528	35	2.0	35	97	0	131	50	17	12	20	1.78
46555104--46555210	55	1.9	55	96	0	196	41	18	12	28	1.86
46559117--46559196	40	2.0	40	100	0	160	30	12	37	20	1.89
46570689--46570724	9	4.1	9	89	7	56	16	0	22	61	1.35
46570689--46570724	17	2.1	18	94	5	65	16	0	22	61	1.35
46571136--46571290	43	3.6	42	80	11	165	25	18	25	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46571133--46571282	44	3.5	42	81	12	164	24	18	24	32	1.97
46572251--46572300	13	4.2	12	80	14	52	68	0	4	28	1.08
46572609--46572639	14	2.2	14	94	0	53	67	0	0	32	0.91
46572611--46572647	19	2.0	18	94	5	65	67	0	0	32	0.91
46572622--46572756	63	2.2	64	82	7	163	63	5	4	25	1.36
46572960--46573009	11	4.2	12	85	12	59	38	36	0	26	1.57
46572966--46573009	23	1.9	23	86	9	63	38	36	0	25	1.56
46572960--46573009	23	2.1	23	82	10	57	38	36	0	26	1.57
46573068--46573103	18	2.0	18	100	0	72	16	0	61	22	1.35
46573086--46573185	29	3.2	29	79	15	85	18	2	50	30	1.58
46573082--46573162	37	2.2	37	93	2	135	18	1	53	27	1.52
46573675--46573882	45	4.6	45	68	15	151	25	23	21	29	1.99
46573398--46574374	135	7.3	135	86	1	1347	27	21	20	30	1.98
46573398--46574374	268	3.6	268	88	1	1372	27	21	20	30	1.98
46573398--46574374	403	2.4	403	89	0	1497	27	21	20	30	1.98
46574077--46574285	45	4.6	45	69	13	160	25	22	21	31	1.98
46575722--46575802	5	16.0	5	74	15	53	0	22	1	76	0.86
46575712--46575759	24	2.0	24	87	0	69	2	20	4	72	1.11
46575723--46575804	6	13.7	6	71	16	55	0	20	1	78	0.83
46575723--46575804	18	4.5	18	74	15	71	0	20	1	78	0.83
46575746--46575804	12	4.8	13	78	13	63	0	22	0	77	0.76
46575746--46575793	13	3.8	13	80	20	57	0	25	0	75	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46575728--46575801	13	5.7	12	73	19	51	0	21	1	77	0.85
46585606--46585652	19	2.5	20	86	6	62	38	10	25	25	1.88
46586019--46586053	18	1.9	18	88	11	54	31	20	20	28	1.97
46586975--46587218	126	1.9	126	96	0	452	37	15	17	28	1.91
46587319--46587368	13	4.2	12	80	14	52	68	0	4	28	1.08
46587679--46587709	14	2.2	14	94	0	53	67	0	0	32	0.91
46587681--46587717	19	2.0	18	94	5	65	67	0	0	32	0.91
46587699--46587831	61	2.3	58	76	17	132	63	6	4	25	1.36
46588047--46588077	11	2.7	12	95	5	55	38	35	0	25	1.56
46588029--46588077	23	2.1	23	81	11	55	38	32	0	28	1.57
46588137--46588172	18	2.0	18	94	0	63	16	0	58	25	1.38
46588155--46588217	29	2.2	29	91	5	101	19	1	47	31	1.59
46589867--46589907	20	2.0	20	100	0	82	39	19	4	36	1.73
46595264--46595320	29	1.9	30	85	7	80	38	0	5	56	1.22
46595592--46595624	17	2.0	17	88	5	50	60	15	0	24	1.35
46600803--46601092	143	2.0	144	95	1	528	28	12	16	41	1.85
46609817--46609861	22	2.0	22	100	0	90	51	0	4	44	1.21
46617073--46617110	19	2.0	19	89	0	58	31	21	5	42	1.75
46623223--46623275	17	3.2	16	81	7	63	32	0	3	64	1.12
46623230--46623275	17	2.8	16	90	6	65	32	0	2	65	1.05
46633159--46633214	28	2.0	28	82	6	69	60	19	3	16	1.49
46633165--46633633	235	2.0	224	86	6	636	52	19	7	21	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46644777--46644854	31	2.5	31	74	12	79	52	6	8	32	1.58
46651077--46651110	18	1.9	17	88	5	50	32	8	8	50	1.64
46656948--46656975	13	2.2	13	100	0	56	0	14	7	78	0.95
46659293--46659328	13	2.8	14	84	16	51	27	25	0	47	1.52
46659280--46659320	18	2.2	19	87	12	59	29	24	0	46	1.53
46659826--46659872	15	3.1	15	81	0	67	48	12	2	36	1.53
46660345--46660408	32	2.0	32	85	8	87	46	7	0	45	1.32
46660922--46660950	13	2.1	14	93	6	51	44	3	0	51	1.18
46660913--46661052	72	1.9	72	97	0	262	42	13	5	39	1.66
46660994--46661022	13	2.1	14	93	6	51	44	3	0	51	1.18
46669816--46669869	3	18.0	3	79	7	56	31	3	1	62	1.23
46669927--46669980	18	3.1	17	82	12	56	35	3	1	59	1.26
46670570--46670624	17	3.2	18	79	7	69	32	10	9	47	1.70
46671336--46671411	36	2.1	36	97	0	143	48	11	22	17	1.79
46673459--46673581	65	1.9	65	86	0	174	30	25	13	31	1.93
46675650--46675692	20	2.1	20	86	4	59	60	0	4	34	1.17
46676619--46676657	6	6.5	6	93	0	69	66	0	0	33	0.92
46680045--46680070	13	2.0	13	100	0	52	53	0	7	38	1.30
46701106--46701172	16	4.2	15	74	14	55	29	2	1	65	1.16
46704364--46704411	19	2.6	19	80	9	55	35	2	14	47	1.56
46704425--46704517	43	2.2	42	88	5	141	27	6	13	51	1.66
46709103--46709150	19	2.6	19	80	9	55	35	2	14	47	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46709164--46709257	43	2.2	43	90	3	145	27	6	12	53	1.63
46718573--46718601	15	1.9	15	100	0	58	68	0	0	31	0.89
46720192--46720227	18	2.0	18	94	0	63	30	22	11	36	1.89
46725985--46729642	368	10.0	366	88	1	5068	32	14	16	36	1.89
46732179--46733625	366	3.9	367	86	1	2013	31	15	16	36	1.90
46736059--46736138	40	2.0	40	87	0	115	52	7	18	21	1.70
46736099--46736304	72	2.8	71	88	3	286	44	9	20	25	1.81
46736123--46736304	75	2.5	72	90	4	267	45	10	18	25	1.82
46736430--46736487	29	2.0	29	100	0	116	55	0	13	31	1.39
46737407--46737445	8	4.9	8	83	0	51	58	0	0	41	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279