genome.fa.s8.2.7.7.80.10.50.1000.213.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  213  of  279  ( 33431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69572310--69572353	16	2.8	16	82	0	52	61	2	13	22	1.43
69579293--69579388	41	2.5	38	76	6	95	29	29	19	21	1.98
69579488--69579563	33	2.3	33	80	15	86	40	19	1	38	1.60
69579518--69579594	28	2.8	28	72	14	79	35	23	0	41	1.55
69579861--69579908	22	2.1	22	85	11	62	29	25	0	45	1.53
69583554--69583609	28	2.0	28	100	0	112	21	21	7	50	1.72
69586754--69586798	22	2.0	22	91	0	72	33	22	8	35	1.85
69587299--69587907	302	2.0	302	93	2	1046	28	27	21	22	1.99
69596583--69596756	94	1.9	92	80	7	208	25	27	18	28	1.98
69606937--69607255	46	6.7	46	75	10	238	23	30	18	27	1.98
69606937--69607254	140	2.2	143	79	9	339	23	29	18	27	1.98
69607684--69607726	19	2.3	18	81	14	52	32	23	0	44	1.54
69616458--69616484	13	2.1	13	100	0	54	29	7	40	22	1.81
69618357--69618616	140	1.9	140	82	8	332	27	20	28	23	1.99
69621987--69622137	57	2.6	57	77	9	146	34	20	15	29	1.93
69631666--69631695	12	2.5	12	94	0	51	0	20	53	26	1.46
69633250--69633380	43	3.0	42	82	8	149	32	24	14	28	1.94
69641569--69641635	22	3.0	22	80	6	73	17	25	19	37	1.94
69641581--69641704	22	5.5	22	73	19	89	16	25	20	37	1.93
69641892--69641939	25	1.9	25	84	16	64	33	4	18	43	1.69
69647805--69647839	14	2.3	16	90	9	56	45	5	28	20	1.73
69649992--69650029	16	2.4	16	90	0	58	0	76	0	23	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69654863--69654965	51	2.0	51	100	0	206	34	8	13	42	1.75
69657072--69657120	19	2.6	20	81	12	68	40	0	4	55	1.19
69657135--69657188	27	2.0	28	89	10	85	18	1	5	74	1.11
69664203--69664407	68	3.0	68	99	0	403	45	11	17	25	1.82
69680577--69680613	20	1.9	20	88	5	58	40	0	8	51	1.32
69682317--69682590	46	6.0	46	89	0	343	39	15	24	20	1.92
69682317--69682590	92	3.0	92	87	0	386	39	15	24	20	1.92
69682332--69682595	138	1.9	138	87	1	386	39	16	24	20	1.92
69683548--69683581	16	2.1	16	88	0	50	64	5	0	29	1.17
69683570--69683615	14	3.1	14	80	17	56	58	2	0	39	1.10
69700097--69700168	35	2.1	35	94	0	126	50	18	12	19	1.78
69702263--69702301	20	1.9	21	84	5	53	56	0	7	35	1.28
69704502--69704598	34	3.1	34	58	27	79	42	15	11	30	1.82
69704471--69704644	58	3.0	58	100	0	348	41	13	12	32	1.82
69710037--69710108	27	2.7	27	91	0	108	36	12	25	26	1.91
69710037--69710136	27	3.7	28	86	2	107	34	15	26	25	1.95
69712455--69712587	45	3.0	45	96	0	239	36	24	13	24	1.92
69712490--69712562	24	3.2	24	60	25	57	36	20	15	27	1.92
69716992--69717037	17	2.6	18	79	10	58	45	4	0	50	1.21
69717699--69717745	19	2.3	20	82	14	60	59	4	2	34	1.29
69722079--69722267	25	7.6	25	65	13	77	34	18	26	20	1.96
69730131--69730197	26	2.6	26	76	2	73	16	16	22	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69730235--69730280	24	1.9	24	86	0	65	13	28	26	32	1.93
69730261--69730322	24	2.6	24	82	10	81	16	22	22	38	1.92
69740884--69740944	25	2.5	25	86	2	79	27	22	27	21	1.99
69740897--69740951	25	2.2	25	86	0	74	34	21	27	16	1.95
69744764--69745027	40	6.7	40	89	5	360	25	27	21	25	1.99
69769348--69769673	176	1.8	177	86	2	474	33	19	9	38	1.84
69769996--69770030	17	2.0	18	88	5	54	34	11	0	54	1.37
69770252--69770525	50	5.4	50	81	3	300	31	25	16	27	1.97
69770252--69770525	100	2.7	100	85	2	334	31	25	16	27	1.97
69776891--69776933	18	2.4	18	88	0	59	23	6	2	67	1.27
69776900--69776934	18	1.9	18	94	0	61	20	5	2	71	1.19
69788109--69788159	6	7.8	6	79	16	57	17	0	3	78	0.90
69790316--69790544	50	4.6	50	80	8	232	24	18	26	30	1.98
69797245--69797470	50	4.5	50	78	8	217	25	19	24	30	1.98
69804287--69804512	50	4.5	50	78	8	235	25	18	26	30	1.98
69804612--69804663	26	2.0	26	81	11	61	36	1	25	36	1.67
69806084--69806141	30	1.9	30	86	6	82	18	37	31	12	1.88
69808933--69809108	46	3.8	45	81	10	212	21	21	29	28	1.98
69808929--69809100	93	1.8	93	94	0	308	20	21	30	27	1.98
69812033--69812112	15	5.4	15	77	7	83	10	18	13	57	1.64
69812024--69812111	30	3.0	30	80	11	92	10	18	15	55	1.68
69824925--69824970	24	1.9	24	100	0	92	26	26	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69827391--69827693	47	6.4	47	92	1	471	32	8	30	28	1.87
69827812--69827886	37	2.0	37	89	0	114	22	18	32	26	1.97
69829758--69829860	43	2.4	43	100	0	206	22	15	35	26	1.94
69829878--69829917	20	2.0	20	95	0	71	35	2	30	32	1.71
69830248--69830748	40	12.6	40	85	3	667	25	21	27	25	1.99
69830302--69830720	79	5.3	79	100	0	838	25	21	27	25	1.99
69830285--69830781	237	2.1	236	90	3	820	26	20	27	25	1.99
69842572--69842836	40	6.7	40	85	5	286	26	27	21	24	1.99
69842539--69842836	80	3.7	80	79	9	263	25	27	21	25	1.99
69842768--69842845	40	1.9	41	82	10	97	26	28	20	24	1.99
69850301--69850404	39	2.6	40	89	1	156	26	29	20	23	1.98
69850301--69850455	79	2.0	80	83	6	199	25	29	21	23	1.99
69850273--69850457	40	4.7	40	80	7	207	25	28	22	23	1.99
69854172--69854239	34	2.0	34	97	0	127	32	8	33	25	1.86
69857591--69857683	47	2.0	47	97	0	177	30	10	23	35	1.89
69863401--69863498	41	2.4	41	84	0	115	25	22	27	24	2.00
69868899--69868939	8	4.8	9	82	11	50	31	9	0	58	1.31
69868899--69868939	17	2.4	17	91	0	64	31	9	0	58	1.31
69880927--69880993	28	2.4	28	79	0	89	37	10	22	29	1.88
69881074--69881296	39	5.7	40	85	4	224	20	22	29	27	1.98
69887565--69887637	28	2.6	28	77	0	92	38	8	23	30	1.84
69887714--69887828	39	3.0	39	88	6	171	16	22	29	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69887824--69887932	40	2.8	40	84	4	123	23	22	26	27	1.99
69896239--69896298	28	2.1	29	87	9	88	31	21	23	23	1.98
69896404--69896468	28	2.3	28	91	0	103	32	7	27	32	1.85
69904083--69904137	28	2.0	28	89	7	85	30	21	23	23	1.99
69904243--69904307	28	2.3	28	91	0	103	32	7	27	32	1.85
69906160--69906228	25	2.8	25	81	0	84	37	23	15	23	1.93
69908212--69908343	47	2.8	46	81	4	165	22	28	18	29	1.98
69910953--69911135	40	4.6	40	80	10	205	25	27	21	24	1.99
69910953--69911135	79	2.3	81	84	7	232	25	27	21	24	1.99
69920138--69920307	65	2.7	63	74	6	162	29	16	29	24	1.97
69924141--69924176	19	1.9	19	88	5	56	44	0	11	44	1.39
69924579--69924762	64	2.9	64	76	8	194	29	16	29	25	1.96
69929879--69929971	39	2.3	40	90	1	143	30	26	16	26	1.96
69931882--69931983	27	3.8	27	90	1	143	29	19	8	42	1.81
69931869--69932010	54	2.6	54	80	1	160	35	19	8	37	1.82
69931962--69932144	27	6.8	27	78	5	145	42	20	7	29	1.79
69931962--69932183	54	4.1	54	77	2	185	40	21	8	29	1.82
69931970--69932183	81	2.6	80	80	2	248	42	20	7	29	1.80
69932216--69932307	27	3.4	27	90	3	132	33	20	26	19	1.96
69933109--69933179	25	2.8	25	93	2	115	25	23	23	26	2.00
69939470--69939643	46	3.7	47	73	8	140	22	27	20	29	1.99
69942714--69942794	27	3.0	26	80	7	72	34	20	23	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69948151--69948184	18	1.9	18	88	5	52	17	23	11	47	1.81
69954679--69954831	77	2.0	77	98	0	297	36	12	14	36	1.84
69955142--69955298	79	2.0	79	98	0	305	47	20	10	21	1.79
69957976--69958020	23	2.0	23	82	8	56	66	4	24	4	1.29
69957976--69958026	24	2.2	23	82	3	57	68	3	21	5	1.27
69961096--69961200	55	1.9	55	88	3	158	23	5	15	55	1.62
69961112--69961233	55	2.3	52	80	13	124	22	6	14	56	1.61
69964538--69964571	12	2.8	12	86	4	50	0	8	8	82	0.85
69973041--69973073	10	3.0	11	86	13	50	45	18	9	27	1.79
69982626--69982669	21	2.0	22	91	4	72	50	0	43	6	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279