genome.fa.s8.2.7.7.80.10.50.1000.188.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  188  of  279  ( 33431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61507645--61508174	73	7.2	73	82	7	617	33	19	16	30	1.94
61507661--61508238	148	3.8	146	92	3	832	32	20	16	29	1.95
61508344--61508388	13	3.4	13	87	6	72	68	6	11	13	1.37
61508172--61508532	100	3.7	101	86	6	450	37	20	18	24	1.94
61508357--61508532	90	2.0	87	87	3	253	36	21	18	23	1.95
61519837--61519942	30	3.3	30	75	16	113	17	5	49	27	1.69
61519862--61519936	37	2.0	37	92	0	123	18	5	49	26	1.69
61520233--61520292	26	2.3	25	77	8	66	26	10	1	61	1.37
61520303--61520350	24	2.0	24	95	0	87	20	10	10	58	1.60
61532659--61532686	5	5.6	5	100	0	56	39	0	42	17	1.50
61547591--61547686	36	2.7	36	73	15	92	58	5	3	33	1.36
61547683--61547730	25	2.0	25	95	4	89	60	6	8	25	1.49
61562908--61562954	24	1.9	24	82	4	58	55	2	4	38	1.31
61562947--61562971	12	2.1	12	100	0	50	76	0	0	24	0.80
61570403--61570503	51	2.0	51	98	0	193	44	8	13	32	1.75
61571243--61571305	6	10.7	6	94	1	110	47	33	0	19	1.49
61572875--61572932	30	1.9	31	92	3	100	50	20	5	24	1.69
61576033--61576266	117	2.0	117	98	1	452	40	17	2	40	1.63
61582014--61582050	5	7.6	5	93	6	67	81	0	0	18	0.70
61582014--61582050	14	2.6	14	95	4	65	81	0	0	18	0.70
61583662--61583839	35	5.1	35	98	0	320	43	17	5	33	1.73
61588430--61588607	27	6.6	27	83	3	196	26	14	28	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61588435--61588586	82	1.9	81	87	4	225	26	14	28	30	1.95
61588427--61588607	82	2.2	81	82	2	220	27	14	27	30	1.95
61588596--61588701	53	2.0	53	92	0	176	28	16	23	31	1.97
61589059--61589590	266	2.0	266	99	0	1046	23	17	23	35	1.95
61596644--61596702	19	2.8	20	76	16	57	35	6	15	42	1.73
61596655--61596697	23	1.9	23	85	4	61	37	4	16	41	1.69
61601767--61601817	19	2.9	17	83	11	66	37	9	17	35	1.83
61602856--61602919	21	3.2	21	62	20	55	32	15	17	34	1.91
61602854--61602932	39	2.0	39	100	0	158	36	12	17	32	1.88
61602868--61602931	21	3.2	21	62	20	55	34	12	20	32	1.90
61607650--61608080	214	2.0	217	86	4	604	42	15	16	25	1.87
61611038--61611070	9	3.7	9	91	0	57	48	21	9	21	1.77
61615430--61615460	6	5.2	6	100	0	62	19	16	0	64	1.29
61615430--61615477	12	3.8	12	84	10	51	18	10	2	68	1.28
61622581--61622730	75	2.0	75	96	0	273	32	12	19	36	1.88
61629235--61629263	13	2.1	14	93	6	51	13	0	6	79	0.93
61632352--61632415	32	2.0	32	100	0	128	43	28	3	25	1.69
61632352--61632406	18	3.3	18	70	19	64	45	29	3	21	1.69
61639724--61639757	17	2.0	17	88	0	50	20	29	11	38	1.88
61644047--61644096	23	2.2	23	82	7	57	42	12	0	46	1.41
61648549--61648593	20	2.3	19	81	7	54	44	2	0	53	1.13
61659657--61659685	14	2.0	15	93	6	51	37	6	20	34	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61660283--61660404	60	2.0	60	98	0	235	48	15	9	26	1.76
61661592--61661650	19	2.8	20	76	16	57	35	6	15	42	1.73
61661603--61661645	23	1.9	23	85	4	61	37	4	16	41	1.69
61666715--61666765	19	2.9	17	83	11	66	37	9	17	35	1.83
61672559--61672989	214	2.0	217	86	4	604	42	15	16	25	1.87
61675692--61675750	18	3.3	18	76	9	66	49	10	6	33	1.63
61677063--61677098	18	2.0	18	88	0	54	47	2	2	47	1.31
61680739--61680823	42	2.0	42	97	0	161	23	12	14	49	1.77
61694172--61694222	23	2.2	23	92	0	84	31	31	13	23	1.93
61705794--61706162	44	8.5	45	70	15	167	28	20	20	30	1.98
61705913--61706165	87	2.9	88	69	12	245	29	21	19	30	1.97
61715151--61715268	61	2.0	60	96	1	218	21	26	15	37	1.93
61719330--61719364	18	1.9	18	94	0	61	20	11	42	25	1.85
61722976--61723019	22	2.0	22	86	4	61	13	11	18	56	1.66
61724831--61724886	26	2.2	26	86	0	76	30	1	3	64	1.21
61725484--61725546	33	1.9	33	86	0	90	23	15	11	49	1.77
61725919--61725957	14	2.8	13	88	7	51	30	23	7	38	1.83
61728203--61728252	20	2.5	20	87	6	75	28	10	16	46	1.78
61737679--61737721	4	10.8	4	80	9	52	0	69	0	30	0.88
61737675--61737724	8	6.8	8	86	9	54	0	66	0	34	0.92
61758906--61759023	59	2.0	59	98	0	227	44	11	18	25	1.82
61766381--61766927	275	2.0	274	95	0	986	27	20	13	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61767344--61767375	15	2.1	15	100	0	64	53	0	0	46	1.00
61767943--61767994	24	2.2	24	96	0	95	34	0	7	57	1.27
61768084--61768117	13	2.5	13	90	4	50	17	8	11	61	1.54
61769884--61769935	24	2.2	24	89	0	77	34	3	7	53	1.48
61791163--61791198	17	2.1	17	90	10	56	27	2	0	69	1.02
61791147--61791224	28	2.8	28	78	5	68	26	3	2	66	1.22
61791177--61791241	21	3.2	21	75	12	66	27	3	1	67	1.14
61791172--61791222	18	2.9	18	85	2	59	27	3	1	66	1.20
61791194--61791246	22	2.4	22	87	3	70	30	1	1	66	1.13
61794067--61794100	3	11.7	3	93	6	61	70	0	0	29	0.87
61798115--61798161	25	2.0	23	83	8	58	27	4	2	65	1.22
61801241--61801416	37	4.8	37	96	0	298	39	13	21	26	1.90
61801379--61801502	46	2.8	46	91	3	200	33	16	22	27	1.96
61808939--61809114	37	4.8	37	96	0	298	39	13	21	26	1.90
61809077--61809200	46	2.8	46	91	3	200	33	16	22	27	1.96
61815854--61815905	24	2.2	24	86	6	70	40	3	5	50	1.45
61819776--61819804	14	2.0	15	93	6	51	68	6	6	17	1.34
61821292--61821423	67	1.9	69	86	6	189	41	12	12	32	1.82
61824028--61824073	15	3.1	15	77	0	56	15	50	10	23	1.75
61824028--61824089	30	2.1	30	84	0	79	16	50	11	22	1.76
61827095--61827127	14	2.3	15	89	5	50	63	6	0	30	1.18
61846058--61846100	21	2.0	21	86	0	59	25	11	32	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61858769--61858795	13	2.1	13	100	0	54	62	0	0	37	0.95
61859366--61859411	19	2.6	18	90	10	69	32	2	0	65	1.05
61859411--61859457	22	2.1	23	88	4	69	38	2	0	59	1.09
61859439--61859474	18	2.0	18	88	0	54	44	5	0	50	1.25
61864671--61864724	27	2.0	28	85	3	74	66	9	7	16	1.42
61867270--61867306	20	2.0	19	85	15	51	48	5	8	37	1.56
61872200--61872239	19	2.1	19	85	0	53	27	15	5	52	1.63
61872349--61872382	17	2.0	17	94	0	59	47	14	11	26	1.79
61873081--61873114	16	2.0	16	88	11	50	41	0	0	58	0.98
61874592--61874635	9	4.9	9	81	10	54	25	31	0	43	1.55
61874812--61874846	16	2.1	18	89	10	56	40	2	0	57	1.14
61876770--61876851	24	3.4	24	81	0	101	37	6	43	12	1.67
61879603--61879651	22	2.3	22	85	3	64	24	6	4	65	1.33
61884433--61884524	32	3.0	31	81	6	100	33	15	8	42	1.77
61888880--61889086	91	2.3	91	77	3	220	28	21	14	34	1.93
61890748--61890785	20	1.9	20	100	0	76	28	0	0	71	0.87
61891126--61891166	16	2.6	16	81	11	50	51	0	2	46	1.14
61911190--61911221	8	4.0	8	95	0	55	50	0	3	46	1.17
61914519--61914566	24	2.0	23	96	4	87	43	0	27	29	1.55
61914540--61916237	847	2.0	847	100	0	3396	41	8	17	33	1.80
61917294--61917588	46	6.4	46	92	3	434	38	8	23	28	1.85
61921320--61921371	24	2.2	24	89	0	77	50	9	3	36	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61927457--61927533	7	11.0	7	77	0	64	15	1	38	44	1.55
61927686--61927724	15	2.5	16	84	16	55	61	0	2	35	1.10
61927954--61927985	16	2.0	16	100	0	64	62	6	6	25	1.42
61928452--61928504	19	3.0	17	73	10	52	35	9	20	33	1.85
61928476--61928533	22	2.7	21	81	7	71	36	5	17	41	1.72
61934216--61934489	45	6.1	45	88	1	379	27	24	18	29	1.98
61948545--61948618	3	24.3	3	83	8	96	62	4	2	31	1.28
61962795--61962829	17	2.1	17	100	0	70	11	34	22	31	1.90
61966227--61966268	20	2.0	21	90	4	68	19	4	0	76	0.96
61977994--61978133	66	2.2	64	96	2	253	54	11	5	28	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279