genome.fa.s8.2.7.7.80.10.50.1000.226.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  226  of  279  ( 33431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73936424--73936468	22	2.0	22	95	0	81	48	13	2	35	1.54
73937978--73938012	10	3.5	10	84	0	52	11	22	25	40	1.88
73943156--73943523	200	1.8	200	98	0	718	39	9	20	30	1.85
73943422--73943626	103	2.0	103	99	0	401	36	10	23	28	1.89
73944867--73945044	27	6.6	27	82	3	196	26	15	28	29	1.96
73944864--73945044	82	2.2	81	82	4	222	26	15	28	29	1.96
73946858--73947060	27	7.6	27	84	1	212	46	20	9	24	1.80
73946848--73947060	54	4.0	54	80	1	259	45	20	10	23	1.82
73946859--73947060	81	2.5	79	82	6	235	46	19	9	24	1.79
73951169--73951261	47	2.0	47	100	0	186	43	2	17	37	1.61
73952549--73952585	18	2.1	18	100	0	74	27	18	16	37	1.92
73955417--73955458	21	2.0	21	85	0	57	40	7	19	33	1.78
73966725--73966817	42	2.2	42	86	5	125	31	25	19	23	1.98
73966701--73966817	43	2.8	42	76	7	128	32	25	17	23	1.97
73969137--73969179	21	2.0	21	90	0	68	58	4	4	32	1.39
73970841--73970936	45	2.2	44	84	1	120	31	21	20	26	1.98
73970901--73972227	178	7.5	178	86	1	1581	27	25	17	29	1.97
73970989--73971781	44	17.8	45	66	14	220	26	24	18	30	1.98
73972038--73972137	44	2.2	44	81	10	114	31	26	15	28	1.95
73978861--73979008	67	2.2	69	78	10	162	32	16	28	22	1.96
73984132--73984157	13	2.0	13	100	0	52	53	7	15	23	1.67
73989234--73989281	25	1.9	25	86	0	69	35	22	14	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73989329--73989384	11	5.5	11	71	16	57	35	12	19	32	1.89
73989318--73989384	20	3.3	20	93	0	116	34	11	20	32	1.90
73989435--73989563	25	5.2	25	88	8	167	30	19	23	27	1.98
73989609--73989690	41	2.0	41	100	0	164	19	17	36	26	1.94
73989789--73989852	31	2.1	31	93	0	110	37	15	23	23	1.93
73992688--73992822	70	1.9	70	90	3	218	32	12	18	36	1.88
73993594--73993765	43	4.0	43	85	6	224	27	19	29	23	1.98
73995410--73995555	57	2.6	57	82	4	161	28	21	4	45	1.72
73999012--73999173	46	3.5	44	74	14	132	26	30	17	25	1.98
74008509--74008683	46	3.8	46	77	15	198	30	29	18	20	1.97
74008518--74008687	93	1.8	93	93	0	295	30	30	18	20	1.97
74009241--74009277	20	1.9	18	89	10	56	35	21	0	43	1.53
74009982--74010070	3	29.3	3	75	10	74	30	4	3	61	1.32
74009985--74010071	20	4.2	20	72	15	79	29	4	4	60	1.36
74010376--74010418	22	2.0	21	81	4	50	32	9	0	58	1.30
74012954--74013216	138	1.9	136	80	6	307	34	20	17	27	1.95
74015230--74015480	62	4.0	62	99	0	493	43	6	6	43	1.56
74021892--74022076	79	2.3	82	82	7	220	24	27	22	25	2.00
74021892--74022076	40	4.7	40	82	6	216	24	27	22	25	2.00
74026130--74026211	43	1.9	43	94	0	146	31	20	17	30	1.95
74026134--74026236	43	2.5	41	85	4	136	33	22	15	28	1.94
74032641--74032793	43	3.6	43	87	3	227	33	18	15	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74034021--74034108	6	14.3	6	73	17	74	47	13	18	20	1.82
74034030--74034108	31	2.5	31	89	0	113	48	12	18	20	1.81
74034035--74034105	25	2.9	23	82	16	72	46	14	19	19	1.84
74034226--74034333	27	4.0	26	83	5	99	36	20	22	21	1.96
74034897--74035173	27	10.3	27	85	0	331	24	18	20	36	1.95
74035167--74035243	27	2.9	27	80	0	82	32	7	25	33	1.85
74035205--74035352	52	2.8	53	81	6	147	30	9	21	38	1.85
74035193--74035388	79	2.4	81	83	5	229	29	8	21	40	1.82
74035263--74035397	27	5.0	27	88	0	173	30	6	22	40	1.79
74035211--74035388	54	3.3	53	80	7	173	29	7	21	41	1.81
74037336--74037423	6	14.3	6	71	17	65	47	13	18	20	1.82
74037345--74037423	31	2.5	31	93	0	131	48	12	18	20	1.81
74037543--74037648	27	4.0	26	81	6	104	36	18	22	21	1.95
74038212--74038441	27	8.5	27	81	5	241	23	17	19	38	1.93
74038212--74038441	54	4.3	54	84	0	289	23	17	19	38	1.93
74038221--74038441	81	2.7	81	80	2	282	23	17	19	38	1.93
74038473--74038657	54	3.4	54	82	3	167	31	8	19	41	1.81
74038509--74038657	27	5.6	27	86	0	192	30	7	18	43	1.77
74038509--74038657	81	1.9	80	88	1	226	30	7	18	43	1.77
74047599--74047631	14	2.4	14	94	0	57	36	9	12	42	1.74
74047848--74047906	6	10.2	6	80	10	61	67	3	1	27	1.16
74047870--74047908	19	2.1	19	95	0	69	66	0	5	28	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74047857--74047937	24	3.3	24	77	13	76	70	2	4	22	1.19
74069940--74069980	21	2.0	21	90	0	64	31	4	4	58	1.40
74070682--74070903	123	1.8	123	82	2	284	30	17	16	36	1.91
74080625--74081989	178	7.7	179	85	3	1587	29	17	25	27	1.98
74080715--74081865	44	26.0	44	66	11	294	30	17	25	27	1.97
74081916--74082011	45	2.2	44	84	1	120	26	20	21	31	1.98
74083673--74083715	21	2.0	21	90	0	68	32	4	4	58	1.39
74084404--74084625	123	1.8	123	82	2	284	30	16	16	36	1.91
74086035--74086151	43	2.8	42	76	7	128	23	17	25	32	1.97
74086035--74086128	42	2.2	42	84	5	127	24	19	25	30	1.98
74097394--74097435	21	2.0	21	85	0	57	33	19	7	40	1.78
74100267--74100303	18	2.1	18	100	0	74	37	16	18	27	1.92
74106340--74107221	28	31.5	28	99	0	1721	25	10	28	35	1.90
74109584--74109632	6	8.2	6	95	0	80	46	0	53	0	1.00
74109854--74109887	6	5.3	6	89	10	50	23	0	0	76	0.79
74109854--74109887	13	2.7	12	86	13	50	23	0	0	76	0.79
74109874--74109917	20	2.2	20	96	4	81	22	4	4	68	1.27
74110471--74110600	48	2.7	46	80	9	154	19	1	32	46	1.59
74110574--74110614	16	2.6	16	92	3	66	19	0	36	43	1.51
74110628--74110665	7	5.4	7	96	0	67	42	44	0	13	1.43
74110620--74110673	21	2.5	21	82	14	74	40	42	0	16	1.48
74110687--74110757	22	3.3	22	77	11	67	45	25	1	28	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74110890--74110940	21	2.4	22	83	3	68	43	27	0	29	1.55
74111187--74111298	54	2.1	54	79	3	118	19	1	26	51	1.57
74111320--74111578	41	6.4	41	89	1	317	20	20	23	35	1.96
74111320--74111578	122	2.1	122	84	4	326	20	20	23	35	1.96
74111320--74111578	81	3.2	80	85	2	313	20	20	23	35	1.96
74119313--74119627	46	6.8	46	95	1	531	21	32	9	35	1.86
74119631--74119797	47	3.5	44	85	8	190	28	28	9	33	1.88
74124054--74124445	27	14.6	27	77	7	338	38	20	10	29	1.87
74124062--74124446	134	2.9	134	81	3	427	38	21	10	29	1.87
74124054--74124425	161	2.3	161	85	2	498	38	20	10	30	1.86
74140921--74141117	27	7.3	26	80	5	187	28	9	19	42	1.83
74140921--74141117	80	2.4	80	84	2	243	28	9	19	42	1.83
74141070--74141131	27	2.3	27	88	0	88	25	8	24	41	1.82
74141109--74141212	27	3.9	27	88	0	145	40	10	22	26	1.86
74142768--74142870	51	2.0	51	92	0	170	27	33	19	20	1.97
74143503--74143772	31	8.7	31	97	0	515	28	25	16	28	1.97
74151595--74151654	30	2.0	30	83	6	77	30	25	8	36	1.85
74153131--74153181	18	2.9	17	86	13	68	29	1	1	66	1.13
74153146--74153179	6	5.7	6	100	0	68	32	0	0	67	0.91
74153229--74153266	18	2.1	18	90	9	60	60	0	15	23	1.35
74154479--74154578	49	2.0	49	98	0	191	39	25	6	30	1.79
74167859--74168135	69	4.0	69	99	0	545	41	18	12	27	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74172446--74173454	47	21.4	47	89	0	1496	33	9	29	27	1.88
74172693--74172768	22	3.3	22	66	16	64	32	11	28	26	1.92
74173304--74173426	22	5.3	22	63	18	70	33	9	30	26	1.89
74172446--74173452	94	10.7	94	95	0	1672	33	9	29	27	1.88
74182921--74182945	13	1.9	13	100	0	50	0	40	28	32	1.57
74185720--74185794	23	3.3	22	75	7	71	28	21	20	30	1.98
74185967--74186024	20	2.9	20	86	0	80	37	6	20	34	1.80
74185996--74186034	20	2.0	20	89	0	60	38	10	15	35	1.81
74188289--74188313	13	1.9	13	100	0	50	32	16	16	36	1.90
74190086--74190164	37	2.1	37	90	0	122	24	18	31	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279