genome.fa.s8.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  147  of  279  ( 33431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47796017--47796165	41	3.7	39	75	12	131	24	14	26	34	1.94
47796017--47796123	40	2.7	40	85	4	117	21	15	27	35	1.94
47796673--47796710	18	2.1	18	100	0	76	39	0	15	44	1.47
47796858--47797123	46	5.7	46	87	4	271	27	15	17	39	1.90
47796856--47797123	70	3.8	70	83	9	277	27	14	17	39	1.90
47796860--47797105	116	2.1	116	95	0	438	27	15	17	39	1.90
47799795--47799847	21	2.6	20	80	11	54	28	20	24	26	1.99
47805058--47805290	116	2.0	116	84	1	306	37	14	15	32	1.88
47805174--47805692	132	3.9	132	84	3	621	36	15	15	32	1.89
47808163--47808256	48	2.0	48	87	8	138	40	27	13	18	1.88
47809882--47809939	20	2.9	19	82	12	64	25	10	10	53	1.66
47814122--47814162	18	2.3	18	87	8	57	65	4	14	14	1.42
47818039--47818085	18	2.7	17	83	6	67	76	0	0	23	0.78
47819291--47819332	21	2.0	21	81	9	50	14	4	21	59	1.53
47822714--47822774	32	2.0	30	87	12	88	45	0	1	52	1.10
47827645--47827674	2	15.5	2	93	6	53	50	0	0	50	1.00
47827646--47827671	13	2.0	13	100	0	52	53	0	0	46	1.00
47827645--47827673	15	1.9	15	100	0	58	51	0	0	48	1.00
47838406--47838492	26	3.4	27	78	7	92	33	22	26	17	1.96
47839505--47839532	13	2.2	13	100	0	56	14	14	0	71	1.15
47845179--47845223	21	2.2	21	84	11	58	28	0	4	66	1.11
47846462--47846503	21	2.0	22	85	4	59	23	14	2	59	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47852502--47852536	17	2.0	17	88	5	52	37	0	5	57	1.23
47862741--47862775	18	1.9	18	88	0	52	62	5	2	28	1.32
47872999--47873060	19	3.0	20	76	17	63	64	0	0	35	0.94
47876354--47876394	21	2.0	21	90	0	64	29	21	29	19	1.98
47879566--47879627	21	2.9	21	73	4	61	53	6	0	40	1.27
47882207--47882421	53	4.0	54	79	10	235	25	31	1	41	1.66
47890005--47890070	31	2.0	33	82	8	82	46	6	9	37	1.60
47896370--47896413	20	2.2	20	100	0	88	34	15	25	25	1.95
47900446--47900495	26	2.0	25	84	11	66	30	28	10	32	1.89
47915962--47916117	77	2.0	77	90	2	242	37	17	18	25	1.93
47917545--47917573	6	4.8	6	100	0	58	86	0	13	0	0.58
47920612--47920641	3	10.0	3	100	0	60	33	33	0	33	1.58
47923614--47923753	61	2.3	59	81	7	174	54	2	0	42	1.17
47934633--47934833	45	4.5	44	78	7	192	41	11	19	26	1.86
47934624--47934839	90	2.4	89	81	5	240	42	11	20	25	1.86
47939594--47939627	16	2.1	16	100	0	68	52	23	0	23	1.47
47939951--47940021	36	2.0	36	91	0	115	45	14	12	28	1.81
47939950--47940013	17	3.6	17	70	15	58	45	14	12	28	1.81
47944000--47944040	21	2.0	21	90	0	64	19	29	21	29	1.98
47948473--47948509	19	1.9	19	88	0	56	29	27	8	35	1.85
47948889--47948929	21	2.0	20	85	4	55	43	0	7	48	1.30
47950103--47950132	14	2.1	14	100	0	60	56	0	20	23	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47956071--47956176	42	2.5	43	84	7	146	43	18	20	16	1.88
47956163--47956204	20	2.1	20	86	8	59	45	14	19	21	1.85
47958590--47958639	20	2.5	20	83	0	55	62	0	4	34	1.14
47965555--47965632	29	2.6	30	83	2	104	38	19	14	28	1.90
47967542--47967702	85	1.9	86	85	3	227	28	18	20	32	1.96
47970179--47970214	16	2.2	16	90	9	56	72	0	2	25	0.98
47974233--47974269	18	2.0	19	85	15	51	32	2	5	59	1.34
47974476--47974541	24	2.7	26	73	23	72	60	4	4	30	1.37
47977235--47977261	11	2.5	11	100	0	54	14	37	40	7	1.74
47978515--47979761	627	2.0	627	98	0	2395	33	25	16	24	1.95
47980301--47980371	25	2.8	25	84	0	97	33	21	26	18	1.96
47980686--47980715	15	1.9	16	93	6	53	43	20	0	36	1.52
47983504--47983731	41	5.6	41	95	3	390	26	19	24	30	1.98
47983506--47983773	123	2.2	122	87	6	373	27	19	24	28	1.99
47992329--47992532	41	5.0	39	83	9	214	28	19	24	26	1.99
47992330--47992534	82	2.5	82	82	9	247	28	19	24	27	1.99
47996433--47996472	17	2.4	17	95	0	71	40	15	10	35	1.80
47996649--47996689	19	2.4	18	84	15	52	43	7	0	48	1.30
47998072--47998119	5	9.6	5	100	0	96	39	0	0	60	0.97
48001328--48001359	5	6.4	5	100	0	64	21	0	18	59	1.38
48001993--48002026	18	1.9	18	94	5	61	67	0	2	29	1.05
48001995--48002033	17	2.2	18	86	4	53	69	0	2	28	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48006096--48006133	19	2.0	19	94	0	67	36	13	15	34	1.87
48008868--48008909	21	2.0	22	90	4	68	54	2	0	42	1.13
48009268--48009303	18	2.1	17	90	10	56	50	5	0	44	1.25
48009563--48009627	31	2.1	30	83	11	78	24	20	7	47	1.76
48012300--48012366	29	2.3	30	86	2	91	62	7	1	28	1.31
48020023--48020064	21	2.1	19	86	8	57	30	4	0	64	1.14
48023061--48023095	18	2.0	18	88	5	54	34	5	0	60	1.21
48032825--48032893	32	2.2	32	97	2	131	31	7	11	49	1.66
48043585--48043622	14	2.7	14	91	0	58	36	7	18	36	1.80
48043614--48043651	19	2.0	19	94	0	67	31	7	10	50	1.66
48046797--48046822	11	2.4	11	100	0	52	38	7	0	53	1.30
48046779--48046895	41	2.8	42	88	6	186	31	3	0	64	1.10
48046821--48046854	17	2.0	17	94	0	59	32	0	0	67	0.91
48046788--48046917	41	3.1	41	77	17	133	31	3	0	65	1.08
48049564--48049595	13	2.3	15	89	10	50	25	0	0	75	0.81
48050139--48050205	31	2.1	32	83	2	82	34	11	16	37	1.85
48050200--48050239	20	2.0	21	85	5	55	62	10	7	20	1.50
48053212--48053278	32	2.2	32	83	5	84	58	1	1	38	1.17
48056093--48056134	14	3.0	14	75	10	50	50	0	2	47	1.14
48056418--48056446	14	2.0	15	93	6	51	62	0	0	37	0.96
48057601--48057664	27	2.4	27	84	5	76	37	0	1	60	1.06
48065443--48065508	31	2.2	30	83	8	80	51	1	1	45	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48065547--48065600	21	2.5	22	82	11	67	46	0	0	53	1.00
48073334--48073461	49	2.6	48	81	8	143	26	25	18	28	1.98
48085498--48085532	13	2.7	13	86	0	52	37	5	11	45	1.64
48087281--48087310	12	2.5	12	94	0	51	33	3	20	43	1.68
48087385--48087428	20	2.2	20	100	0	88	4	27	9	59	1.48
48088834--48088867	16	2.1	16	100	0	68	23	0	0	76	0.79
48088997--48089065	30	2.3	30	78	9	79	46	7	2	43	1.46
48089623--48089695	19	3.8	19	87	0	110	36	13	16	32	1.88
48089901--48089945	23	2.0	23	81	0	54	22	0	15	62	1.33
48096749--48097063	44	7.2	44	62	5	143	26	27	24	21	2.00
48096656--48097319	88	7.6	88	89	0	999	26	27	24	21	1.99
48097319--48097427	44	2.5	44	85	5	141	28	21	22	28	1.99
48097803--48098039	44	5.5	44	78	7	245	29	20	19	29	1.97
48097801--48098091	128	2.3	128	92	0	483	29	20	21	28	1.98
48098060--48098181	45	2.7	45	88	1	174	28	22	24	23	1.99
48098124--48098394	135	2.0	135	100	0	542	35	18	21	25	1.95
48098867--48098920	19	2.8	19	94	0	99	37	9	16	37	1.81
48098867--48098943	38	1.9	40	87	10	113	36	7	16	38	1.78
48099126--48099170	23	2.0	23	81	0	54	22	0	15	62	1.33
48102059--48102162	49	2.1	49	94	0	181	31	7	10	50	1.65
48102833--48102867	15	2.3	15	95	0	61	31	20	17	31	1.95
48103147--48103189	21	2.0	21	86	8	61	34	0	6	58	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48103206--48103251	18	2.6	18	86	3	58	43	0	2	54	1.12
48103154--48103392	120	2.0	119	96	1	444	42	0	4	51	1.28
48103613--48103645	16	2.1	16	94	0	57	24	30	6	39	1.79
48104232--48104294	21	3.0	21	83	4	65	38	1	3	57	1.24
48112947--48113351	77	5.3	77	81	2	413	24	18	15	41	1.89
48113163--48113352	40	4.9	38	68	15	115	28	18	13	40	1.88
48112947--48113352	154	2.6	154	82	2	485	24	18	15	41	1.89
48121809--48121869	23	2.5	24	84	15	81	34	21	22	21	1.97
48121830--48121901	23	3.0	23	78	17	67	36	16	22	25	1.94
48124129--48124246	45	2.5	45	84	6	137	54	4	3	38	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279