Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  160  of  279  ( 33431 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52859457--52859595
22
5.8
24
72
20
89
58
3
5
33
1.37
52859564--52859599
11
3.3
11
88
0
54
61
5
0
33
1.19
52859634--52859687
23
2.5
20
80
13
54
55
7
1
35
1.39
52860064--52860155
36
2.6
36
96
0
166
27
18
26
28
1.98
52864480--52864510
15
2.0
16
93
6
55
48
19
0
32
1.49
52874981--52875017
19
1.9
19
88
0
56
45
0
2
51
1.15
52880481--52880525
23
2.0
23
90
0
72
37
17
6
37
1.76
52886747--52886773
9
3.0
9
100
0
54
44
0
0
55
0.99
52887546--52887607
30
2.1
30
87
0
88
61
11
3
24
1.44
52889849--52889899
26
2.0
26
85
11
70
37
0
3
58
1.16
52901511--52901562
26
2.0
26
84
0
68
42
1
3
51
1.31
52901575--52901624
16
3.2
16
75
10
50
54
0
0
46
1.00
52903335--52903395
17
3.8
17
78
12
83
11
11
1
75
1.12
52903333--52903408
31
2.5
30
87
8
109
11
10
1
76
1.09
52903426--52903502
10
8.2
9
75
8
66
11
3
3
80
0.98
52903492--52903585
22
4.2
22
69
16
59
39
1
3
56
1.22
52903659--52903685
14
1.9
14
100
0
54
44
0
0
55
0.99
52903605--52903685
36
2.2
37
82
8
94
43
1
2
53
1.22
52903644--52903685
23
1.9
22
85
9
59
45
0
2
52
1.13
52903865--52903956
18
5.2
19
71
20
58
18
5
2
73
1.12
52903855--52903964
36
3.2
36
76
20
110
20
4
1
73
1.10
52903953--52904263
147
2.1
145
96
1
536
37
2
3
55
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52904021--52904050
15
2.1
14
93
6
51
40
0
0
60
0.97
52904007--52904263
70
3.6
70
73
15
263
36
2
3
57
1.29
52904168--52904197
15
2.1
14
93
6
51
40
0
0
60
0.97
52904005--52904263
36
7.2
36
71
14
176
37
2
3
56
1.29
52903962--52904344
147
2.6
146
88
4
468
37
2
4
55
1.34
52904335--52904373
20
2.1
19
90
9
62
30
5
5
58
1.41
52904375--52904400
8
3.2
8
100
0
52
88
0
0
11
0.52
52904478--52904588
34
3.1
36
79
8
129
59
3
1
35
1.25
52904545--52904574
15
2.1
15
93
6
53
60
0
0
40
0.97
52904820--52904866
20
2.3
20
86
13
62
70
0
4
25
1.05
52904820--52904860
10
4.0
10
83
3
55
73
0
2
24
0.96
52904911--52904969
23
2.5
25
73
15
63
55
1
3
38
1.26
52904923--52905062
37
3.9
36
75
11
103
57
3
1
37
1.25
52905106--52905176
9
7.9
9
70
10
56
80
2
5
11
0.99
52905129--52905177
17
2.9
17
88
8
66
79
2
10
8
1.01
52905195--52905245
21
2.5
20
79
17
59
82
1
7
7
0.92
52905201--52905270
17
4.4
16
73
20
67
78
1
11
8
1.02
52905195--52905268
30
2.5
29
89
6
105
79
1
9
9
0.99
52914613--52914680
11
6.2
11
75
0
55
22
7
7
63
1.45
52914613--52914680
22
3.1
22
70
8
66
22
7
7
63
1.45
52928196--52928235
18
2.2
18
86
8
55
20
0
12
67
1.22
52928279--52928347
31
2.2
31
89
0
102
21
20
23
34
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52928465--52928512
24
2.0
24
100
0
96
54
12
8
25
1.65
52928794--52928897
9
11.6
9
87
4
147
43
21
9
25
1.83
52928916--52928950
6
5.5
6
87
12
52
17
0
2
80
0.84
52928915--52928948
14
2.5
14
90
4
52
17
0
5
76
0.98
52932690--52932813
62
2.0
62
100
0
248
22
24
11
41
1.86
52940985--52941019
17
2.1
17
94
0
61
48
0
0
51
1.00
52945881--52945915
16
2.2
16
89
0
52
65
0
28
5
1.15
52948717--52948749
16
2.1
16
88
5
50
66
0
0
33
0.92
52955215--52955267
16
3.3
16
78
0
70
35
16
5
41
1.73
52955627--52955707
33
2.5
33
85
0
90
41
3
6
48
1.46
52960805--52960854
24
2.0
26
84
7
68
34
2
4
60
1.27
52961517--52961562
24
2.0
22
87
8
65
54
8
8
28
1.61
52965282--52965315
15
2.3
15
94
0
59
55
35
0
8
1.31
52966625--52966717
18
5.2
18
93
0
159
26
24
17
31
1.97
52966625--52966717
36
2.6
36
98
0
177
26
24
17
31
1.97
52979792--52979870
40
2.0
39
95
2
140
48
25
6
20
1.73
52983601--52983634
17
2.0
17
88
11
52
41
23
17
17
1.90
52985719--52985772
28
1.9
28
85
7
74
55
7
0
37
1.28
52986765--52986798
17
2.0
17
94
0
59
52
2
0
44
1.16
53001629--53001719
37
2.4
37
79
5
101
29
24
19
26
1.98
53002590--53002644
9
6.2
9
74
17
53
0
18
5
76
0.97
53002672--53002730
26
2.3
26
85
2
75
40
3
0
55
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53005204--53005334
35
3.6
35
73
11
120
32
22
11
32
1.90
53008404--53008429
12
2.2
12
100
0
52
30
26
34
7
1.85
53029048--53029090
21
2.0
21
100
0
86
13
13
30
41
1.84
53035057--53035099
21
2.0
22
82
13
54
55
0
4
39
1.20
53047720--53047780
9
6.8
9
92
0
95
24
9
27
37
1.87
53048727--53048765
16
2.6
15
84
11
53
48
0
2
48
1.15
53048757--53048806
9
5.7
9
79
11
50
36
0
2
62
1.07
53048751--53048806
19
3.1
18
78
12
62
37
0
3
58
1.15
53049270--53049335
25
2.8
24
75
11
64
43
1
0
54
1.09
53049364--53049411
20
2.4
20
80
13
55
27
2
0
70
0.98
53051787--53051844
21
2.9
21
82
5
66
39
12
10
37
1.77
53059294--53059444
53
2.8
53
89
4
214
29
27
16
25
1.97
53066812--53066962
53
2.8
53
89
4
214
29
27
16
25
1.97
53068191--53068218
10
2.8
10
100
0
56
32
17
0
50
1.47
53071690--53072162
35
13.6
35
87
2
506
31
25
14
28
1.95
53071690--53072162
105
4.5
105
83
3
560
31
25
14
28
1.95
53074385--53074452
22
3.1
22
84
0
91
20
22
14
42
1.88
53079177--53079312
46
3.0
46
90
2
202
41
13
22
22
1.89
53079593--53079625
17
2.0
17
94
5
59
48
0
15
36
1.45
53082048--53082094
20
2.5
19
75
21
53
25
0
4
70
1.05
53092585--53092771
93
2.0
93
82
9
231
44
11
8
35
1.71
53096214--53096267
17
3.1
17
81
5
54
46
0
1
51
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53097214--53097257
17
2.7
16
80
16
54
52
15
9
22
1.71
53101661--53101701
12
3.5
12
86
6
66
46
0
36
17
1.48
53112588--53112634
3
15.7
3
90
0
76
68
0
31
0
0.90
53117414--53117472
31
1.9
31
100
0
118
49
10
3
37
1.54
53121583--53121629
21
2.2
21
77
7
51
17
10
4
68
1.35
53143122--53143172
18
2.8
18
82
8
59
17
5
0
76
0.98
53143269--53143322
22
2.4
22
76
17
56
48
3
0
48
1.19
53147314--53147412
50
2.0
50
90
4
155
15
20
11
53
1.71
53156029--53156090
24
2.5
25
76
10
65
54
4
4
35
1.43
53156115--53156158
15
2.9
15
80
12
54
56
9
4
29
1.50
53159710--53159830
46
3.0
38
78
18
127
36
13
23
26
1.92
53159746--53159928
46
4.0
46
89
1
242
39
15
24
20
1.91
53160189--53160235
25
2.0
25
83
8
62
53
4
14
27
1.60
53161161--53161310
43
3.5
41
74
8
122
19
18
24
38
1.93
53161154--53161310
86
1.8
85
82
6
201
19
19
23
37
1.94
53161695--53161839
44
3.3
43
71
10
141
21
22
20
35
1.96
53161683--53161848
88
1.9
87
92
1
278
21
21
21
36
1.95
53162348--53162467
55
2.2
55
98
0
231
51
11
17
19
1.75
53176040--53176097
23
2.7
20
78
17
62
53
1
3
41
1.28
53176040--53176100
22
2.7
23
80
7
72
52
1
3
42
1.27
53178064--53178104
20
2.0
20
90
0
64
48
0
4
46
1.23
53178109--53178156
22
2.2
21
77
3
51
47
4
0
47
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53183445--53183491
23
2.0
23
83
4
58
53
0
2
44
1.12
53183566--53183606
22
1.9
21
85
5
55
56
0
4
39
1.21
53183573--53183643
31
2.2
32
87
2
99
54
1
4
39
1.28
53183941--53183975
16
2.2
16
95
5
63
48
5
0
45
1.26
53185619--53185687
24
3.0
23
79
10
77
49
5
1
43
1.35
53186073--53186103
16
1.9
16
93
0
53
45
0
3
51
1.17
53186805--53186845
17
2.4
18
80
12
50
43
2
0
53
1.13
53186820--53186858
19
2.0
20
85
5
53
48
0
0
51
1.00
53189042--53189176
39
3.4
39
76
8
123
23
20
27
28
1.99
53193349--53193612
136
1.9
136
97
0
501
33
17
14
33
1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279