genome.fa.s8.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  116  of  279  ( 33431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36878656--36878985	27	12.3	27	88	0	464	25	21	20	33	1.97
36878970--36879178	27	7.7	27	87	2	258	33	9	18	39	1.82
36878943--36879178	54	4.4	54	82	6	255	32	10	18	38	1.85
36878968--36879178	109	1.9	109	85	5	293	33	9	18	38	1.82
36878967--36879221	54	4.7	54	84	2	278	32	9	19	39	1.83
36879263--36879357	27	3.5	25	75	13	73	30	7	18	43	1.78
36889006--36889179	89	2.0	89	97	0	330	32	22	16	29	1.95
36889428--36889545	62	1.9	62	94	0	209	35	14	22	27	1.93
36889847--36889982	69	2.0	69	91	0	218	41	19	9	28	1.83
36892787--36892910	55	2.2	56	85	2	162	21	25	29	24	1.99
36894386--36894612	47	4.8	48	84	5	261	24	30	17	27	1.97
36894386--36894651	94	2.8	92	83	5	295	24	29	18	28	1.98
36894386--36894651	47	5.7	45	81	10	179	24	29	18	28	1.98
36896590--36896631	10	4.1	10	80	14	50	54	28	0	16	1.42
36901097--36902532	768	1.9	768	91	1	2358	29	22	13	33	1.93
36904513--36904735	40	5.6	40	85	4	166	24	20	27	26	1.99
36904513--36904737	80	2.8	79	82	3	236	24	20	28	27	1.99
36904568--36904735	40	4.2	40	90	0	230	24	20	28	26	1.99
36904588--36904770	79	2.3	80	82	1	226	25	20	27	25	1.99
36910717--36910868	76	2.0	76	93	0	259	44	15	9	31	1.78
36927119--36927266	79	1.9	79	95	1	271	22	14	14	48	1.80
36929290--36929429	70	2.0	71	95	1	255	27	18	23	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36935691--36935873	96	1.9	96	94	2	323	40	14	20	25	1.90
36940611--36940828	40	5.5	40	90	2	307	24	21	26	27	1.99
36940611--36940828	79	2.7	80	89	4	325	24	21	26	27	1.99
36940611--36940828	119	1.8	120	88	4	334	24	21	26	27	1.99
36940611--36940861	79	3.2	79	83	8	296	25	21	25	26	2.00
36947976--36948119	40	3.6	40	82	1	182	25	25	22	27	2.00
36947940--36948119	80	2.3	79	85	5	231	26	26	21	26	2.00
36957033--36957112	40	2.0	40	97	0	151	48	22	6	22	1.72
36961385--36961438	6	9.5	6	82	8	60	77	0	5	16	0.94
36961365--36961438	12	6.4	11	77	16	62	75	0	5	18	0.99
36961392--36961442	27	1.9	26	92	4	84	78	0	3	17	0.90
36966815--36966847	13	2.6	13	90	4	50	48	12	0	39	1.40
36969343--36969380	20	2.0	19	85	10	51	52	15	26	5	1.64
36977262--36977288	13	2.1	13	100	0	54	14	33	37	14	1.88
36981323--36981515	44	4.5	44	78	9	184	27	19	25	27	1.99
36986270--36986453	64	2.8	64	80	8	194	22	30	17	29	1.97
36988649--36988732	31	2.7	31	92	1	134	29	27	15	27	1.96
36988756--36988847	42	2.2	42	96	0	166	31	20	16	31	1.95
36988995--36989064	25	2.8	25	84	4	88	25	22	25	25	2.00
36989875--36989939	27	2.4	27	82	5	78	21	24	18	35	1.96
36989970--36990394	27	15.7	27	77	4	151	35	8	19	37	1.81
36989978--36990238	54	4.8	54	73	7	215	33	8	17	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36990199--36990355	27	5.8	27	87	0	224	39	7	23	29	1.81
36990171--36990366	81	2.4	81	80	0	230	37	7	22	33	1.81
36990199--36990355	54	2.9	54	87	0	251	39	7	23	29	1.81
36992709--36992788	42	1.9	42	92	0	133	35	16	16	32	1.91
36992943--36993012	25	2.8	25	91	4	106	24	24	27	24	2.00
37004936--37005010	27	2.8	27	74	11	73	20	20	22	37	1.94
37005051--37005253	27	7.4	27	80	8	142	33	8	18	39	1.82
37005028--37005253	54	4.1	54	72	10	163	32	9	19	38	1.83
37005203--37005388	27	6.9	27	84	2	203	39	6	20	32	1.80
37005203--37005399	81	2.4	81	80	0	232	38	7	20	33	1.80
37005232--37005388	27	5.8	27	88	0	215	41	7	21	30	1.79
37005232--37005412	27	6.7	27	86	0	182	39	7	20	32	1.80
37007668--37007751	31	2.7	31	85	1	98	27	27	14	30	1.95
37007773--37007865	42	2.2	42	96	0	168	32	20	16	31	1.94
37008013--37008082	25	2.8	25	89	4	97	24	22	27	25	2.00
37008987--37009239	54	4.6	54	75	8	226	32	8	19	39	1.82
37008987--37009339	27	13.0	27	77	5	183	33	9	19	37	1.83
37017963--37018084	47	2.6	47	84	5	140	30	25	15	28	1.96
37018108--37018347	31	7.7	31	87	3	331	27	26	18	28	1.98
37018108--37018347	62	3.9	62	90	3	376	27	26	18	28	1.98
37018108--37018347	93	2.6	93	89	1	365	27	26	18	28	1.98
37018325--37018501	50	3.5	50	88	2	257	26	21	16	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37025252--37025533	94	3.0	94	99	0	555	37	13	13	35	1.84
37026799--37026838	20	2.0	20	85	0	53	35	5	20	40	1.74
37028635--37028706	36	2.0	36	88	0	108	19	16	16	47	1.83
37033007--37033153	42	3.4	43	75	8	120	29	20	23	26	1.99
37035067--37035191	38	3.3	38	91	1	187	25	28	20	24	1.99
37037564--37037608	10	4.1	11	78	21	58	17	6	0	75	1.01
37037577--37037623	18	2.6	18	76	6	51	19	8	0	72	1.10
37046107--37046161	27	2.0	27	100	0	110	29	18	10	41	1.84
37057357--37057394	19	2.0	20	85	15	53	36	0	23	39	1.55
37066940--37067017	38	2.1	38	95	0	138	37	6	14	42	1.71
37067861--37067890	15	1.9	16	93	6	53	53	6	20	20	1.67
37068299--37068343	18	2.5	18	100	0	90	42	4	13	40	1.64
37072396--37072420	13	1.9	13	100	0	50	48	16	0	36	1.46
37087953--37088071	37	3.2	37	86	9	163	26	21	15	35	1.94
37088021--37088295	52	5.2	52	97	0	505	26	23	14	35	1.94
37091511--37092325	58	14.0	58	99	0	1621	31	31	13	24	1.94
37093584--37093735	37	3.9	37	81	13	173	26	21	15	36	1.94
37093652--37093920	46	5.6	46	84	10	340	28	22	14	34	1.93
37093695--37093914	52	4.3	52	85	8	299	27	22	14	35	1.93
37093652--37093920	98	2.7	98	93	0	457	28	22	14	34	1.93
37097046--37097191	49	3.0	49	90	1	229	32	29	13	23	1.93
37103493--37103553	30	2.0	30	83	0	77	37	4	24	32	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37109173--37110159	103	9.6	103	98	0	1857	20	21	28	29	1.98
37112919--37113042	46	2.8	45	90	6	189	27	21	16	33	1.95
37113005--37113225	37	5.8	37	75	21	149	26	23	14	36	1.93
37112959--37113225	83	3.3	83	69	19	276	26	22	14	35	1.94
37113075--37113198	46	2.8	45	90	6	189	27	21	16	33	1.95
37112903--37113213	156	2.0	156	100	0	622	26	22	15	35	1.94
37115447--37115603	37	4.0	37	80	14	181	28	21	14	36	1.92
37115520--37115984	46	9.6	46	86	8	579	29	21	14	33	1.93
37115563--37115970	52	8.2	51	85	9	558	29	21	14	34	1.93
37115629--37115984	98	3.7	92	90	6	442	29	21	15	33	1.94
37115520--37115984	150	3.2	150	92	3	747	29	21	14	33	1.93
37119110--37119313	49	4.0	50	83	10	241	32	29	13	24	1.94
37119194--37119312	58	2.0	59	98	1	231	31	31	13	23	1.93
37119203--37119293	28	3.2	28	66	22	80	27	31	15	25	1.95
37120565--37120710	37	4.0	37	93	1	242	24	21	16	36	1.94
37120674--37120942	46	5.6	46	84	10	340	28	22	14	34	1.93
37120717--37120936	52	4.3	52	85	8	299	27	22	14	35	1.93
37120674--37120942	98	2.7	98	93	0	457	28	22	14	34	1.93
37128268--37128365	23	4.3	23	90	2	162	31	26	21	20	1.98
37128275--37128363	45	2.0	45	95	0	160	31	26	22	19	1.97
37145528--37145559	16	2.0	16	100	0	64	18	12	25	43	1.85
37147026--37147086	30	2.1	30	87	6	90	63	1	1	32	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37157659--37157683	2	12.5	2	100	0	50	52	0	0	48	1.00
37159362--37159394	7	4.6	7	96	3	57	72	3	0	24	0.98
37164987--37165022	13	2.8	14	84	16	51	27	25	0	47	1.52
37164974--37165014	18	2.2	19	87	12	59	29	24	0	46	1.53
37165137--37165271	39	3.4	38	73	8	101	28	28	20	23	1.99
37165511--37165549	18	2.1	19	90	4	62	48	10	0	41	1.37
37166188--37166243	5	11.0	5	77	11	60	57	1	0	41	1.09
37166188--37166243	11	5.5	10	81	8	60	57	1	0	41	1.09
37166187--37166243	26	2.2	25	85	11	80	56	1	0	42	1.10
37169178--37169255	31	2.5	31	82	2	84	43	5	10	41	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279