genome.fa.s8.2.7.7.80.10.50.1000.227.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  227  of  279  ( 33431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74195072--74195197	55	2.3	54	79	5	144	25	33	24	16	1.96
74200187--74200249	31	2.0	31	100	0	126	52	6	6	34	1.52
74208339--74208411	38	1.9	38	91	0	119	28	13	27	30	1.94
74222204--74222264	25	2.4	25	83	8	70	49	31	1	18	1.57
74224264--74224578	48	6.6	48	87	2	420	26	31	16	25	1.97
74228453--74228673	40	5.5	40	83	3	264	23	22	26	26	2.00
74228454--74228672	83	2.7	80	85	5	255	24	22	26	26	2.00
74243031--74243097	35	1.9	35	93	6	118	23	28	11	35	1.91
74244663--74244726	32	2.0	32	93	0	110	29	29	18	21	1.97
74264445--74264493	19	2.5	20	77	12	57	32	14	2	51	1.54
74268460--74268530	22	3.1	21	77	20	56	28	1	4	66	1.19
74268478--74268526	26	2.0	24	88	8	71	32	0	4	63	1.13
74268481--74268538	25	2.3	26	82	5	75	29	0	3	67	1.07
74269250--74269284	17	2.0	18	88	5	54	37	0	28	34	1.58
74273484--74273539	28	1.9	30	85	7	80	28	14	8	48	1.74
74275046--74275087	17	2.5	17	96	0	75	42	11	0	45	1.41
74286568--74286738	93	1.8	93	93	0	297	21	20	29	29	1.98
74286572--74286743	46	3.7	46	77	13	199	21	20	28	29	1.98
74288436--74288611	95	1.9	94	87	8	259	22	32	17	27	1.97
74288434--74288656	47	4.8	46	78	12	199	23	30	17	28	1.97
74295691--74296013	98	3.4	97	78	11	269	24	29	18	27	1.98
74295691--74296010	48	6.8	46	74	14	190	24	29	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74302742--74302844	53	1.9	53	96	0	188	48	10	9	31	1.70
74305661--74305690	15	1.9	16	93	6	53	56	0	0	43	0.99
74305972--74306008	18	2.1	18	89	0	56	48	10	10	29	1.72
74306498--74306580	17	4.8	17	70	20	55	38	3	3	54	1.36
74306534--74306593	17	3.4	17	76	23	61	40	1	6	51	1.38
74310173--74310332	41	3.9	41	76	12	168	22	23	28	26	1.99
74312356--74312496	54	2.6	54	89	3	212	18	21	22	36	1.95
74312356--74312514	27	5.9	27	78	12	148	19	22	21	36	1.95
74318786--74319047	131	2.0	131	96	0	488	38	9	22	28	1.86
74320489--74320629	27	5.2	26	82	9	149	17	23	23	35	1.95
74320489--74320629	54	2.6	53	88	3	192	17	23	23	35	1.95
74321966--74322010	17	2.6	16	86	10	54	33	4	0	62	1.15
74323313--74323349	17	2.1	18	90	5	58	51	0	2	45	1.15
74323337--74323380	23	2.0	23	86	8	65	54	0	0	45	0.99
74324465--74324511	9	5.1	9	80	12	51	68	2	0	29	1.02
74324460--74324497	17	2.2	18	86	13	53	63	0	0	36	0.95
74324562--74324620	22	2.7	22	71	10	57	57	0	6	35	1.25
74324594--74324655	29	2.1	30	93	3	108	59	1	0	38	1.07
74324583--74324659	29	2.4	33	79	16	99	59	1	2	36	1.19
74324832--74324957	25	5.0	25	98	0	234	29	0	3	66	1.09
74325290--74325319	15	2.0	15	93	0	51	56	0	6	36	1.26
74327809--74327850	17	2.5	17	96	0	75	35	19	19	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74333423--74333468	8	5.8	8	84	7	58	60	0	2	36	1.09
74333422--74333467	23	2.0	24	91	4	76	58	0	2	39	1.10
74333460--74333504	16	2.9	15	86	6	54	75	0	15	8	1.03
74333467--74333504	4	9.5	4	86	11	51	76	0	18	5	0.97
74336024--74336055	10	3.2	10	90	0	55	53	28	0	18	1.45
74341832--74341882	24	2.1	24	85	0	66	21	25	15	37	1.93
74356794--74356857	26	2.5	26	79	5	67	23	28	9	39	1.86
74362058--74362091	16	2.1	17	88	5	52	11	0	11	76	1.02
74364533--74364632	49	2.0	49	96	0	182	33	14	19	34	1.91
74368867--74370189	333	4.0	333	98	0	2567	28	15	18	37	1.92
74370087--74370616	267	2.0	267	99	0	1051	34	14	14	36	1.86
74372277--74372319	15	2.7	16	85	10	61	27	0	6	65	1.18
74373621--74373654	12	2.8	12	86	4	50	55	23	20	0	1.43
74380339--74380364	11	2.4	11	100	0	52	30	7	30	30	1.85
74381413--74381574	45	3.6	45	89	4	254	22	20	27	29	1.99
74383313--74383572	55	4.8	54	76	7	224	36	17	25	21	1.95
74383320--74383520	108	1.8	110	85	4	282	33	17	26	22	1.96
74389328--74389632	85	3.6	85	100	0	610	36	12	22	28	1.91
74391160--74391404	55	4.6	53	76	8	232	37	17	22	21	1.94
74391167--74391367	108	1.8	110	87	4	300	36	17	22	22	1.95
74393792--74393821	8	3.8	8	95	0	51	56	0	3	40	1.16
74401873--74401939	32	2.1	32	88	0	98	25	29	25	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74412689--74412787	50	2.0	49	88	4	137	42	28	15	13	1.84
74415132--74415188	27	2.1	27	96	0	105	24	3	17	54	1.59
74423542--74423579	17	2.2	17	95	0	67	21	7	10	60	1.54
74424263--74424404	74	1.9	74	91	0	230	28	32	7	30	1.85
74424522--74424547	7	3.7	7	100	0	52	88	0	0	11	0.52
74425768--74425799	14	2.4	13	90	10	55	18	6	12	62	1.50
74435165--74435484	48	6.7	47	87	3	410	20	17	27	35	1.95
74441084--74441134	26	2.0	26	84	3	68	62	3	1	31	1.24
74441096--74441144	26	2.0	24	88	8	71	61	6	2	30	1.32
74441248--74441390	72	2.0	72	93	4	245	37	21	19	20	1.94
74445150--74445211	30	2.0	31	81	9	74	59	1	0	38	1.07
74449184--74449273	45	2.0	45	97	0	171	28	30	17	23	1.97
74454076--74454272	68	2.9	68	99	0	387	39	6	7	47	1.56
74454522--74454568	21	2.1	23	84	7	62	44	0	0	55	0.99
74455594--74455638	21	2.1	21	84	8	56	4	44	20	31	1.71
74456048--74456076	14	2.1	14	93	6	51	58	6	0	34	1.25
74461157--74461479	18	17.5	18	73	14	230	38	2	13	45	1.57
74461141--74461479	74	4.6	74	100	0	678	37	2	13	46	1.56
74461175--74461480	56	5.5	55	70	16	177	38	2	13	45	1.57
74461680--74461704	5	5.0	5	100	0	50	80	0	0	20	0.72
74461777--74461801	5	5.0	5	100	0	50	80	0	0	20	0.72
74461871--74461895	5	5.0	5	100	0	50	80	0	0	20	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74461663--74461943	97	3.0	94	94	3	499	53	4	6	34	1.48
74461916--74462100	99	1.9	98	86	6	268	42	5	7	44	1.56
74462763--74462817	8	7.0	8	79	4	58	34	30	1	32	1.69
74464398--74464776	157	2.4	157	80	9	411	30	22	13	34	1.92
74466224--74466302	38	2.1	37	83	6	97	26	24	17	31	1.97
74466303--74466386	39	2.1	39	84	2	105	16	19	23	40	1.91
74466794--74466821	12	2.3	12	100	0	56	7	7	32	53	1.55
74466827--74467064	111	2.1	111	91	1	379	39	16	23	21	1.92
74467018--74467131	41	2.8	41	82	4	124	39	12	26	21	1.89
74467138--74467347	7	29.3	7	68	11	59	20	1	30	48	1.59
74467173--74467218	22	2.0	23	87	4	67	21	2	23	52	1.58
74467229--74467283	28	1.9	28	88	3	83	20	0	30	49	1.49
74467195--74467344	64	2.3	64	82	5	178	19	1	32	47	1.58
74467448--74467541	28	3.4	28	75	10	93	20	2	34	43	1.64
74467448--74467543	7	13.7	7	75	0	84	19	2	35	42	1.63
74467849--74468141	124	2.3	125	80	3	311	34	19	19	26	1.96
74468354--74468405	18	2.8	18	83	13	70	28	34	0	36	1.58
74470547--74470632	9	9.6	9	78	5	75	45	19	2	32	1.63
74470547--74470643	36	2.8	36	79	6	101	46	18	2	32	1.61
74470511--74470639	63	2.1	60	84	5	161	46	17	1	34	1.57
74470565--74470676	43	2.5	44	85	4	154	47	16	2	33	1.61
74470738--74470790	21	2.5	21	84	0	79	30	7	30	32	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74472279--74472528	84	3.0	84	100	0	500	30	22	9	37	1.86
74474481--74474525	9	5.0	9	88	0	63	46	17	0	35	1.49
74477956--74478004	13	3.8	13	94	0	89	24	46	26	2	1.63
74478610--74478674	32	2.0	32	100	0	130	30	6	24	38	1.80
74481549--74481598	12	4.2	12	92	0	82	18	18	50	14	1.79
74485297--74485457	32	5.0	32	100	0	322	31	6	24	37	1.80
74488156--74488253	42	2.3	42	84	3	135	32	21	13	32	1.92
74495657--74495778	42	2.9	42	80	6	113	30	22	14	31	1.94
74495681--74495778	42	2.3	42	82	6	119	32	20	13	33	1.91
74500554--74500616	30	2.1	30	96	0	117	53	20	4	20	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279