Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  110  of  279  ( 33431 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34833804--34833864
30
2.1
29
96
3
113
36
22
16
24
1.94
34837500--34837536
11
3.5
11
92
3
58
67
0
0
32
0.91
34841889--34841945
29
1.9
30
86
10
82
42
12
7
38
1.70
34842017--34842056
22
1.9
22
90
10
66
32
7
7
52
1.58
34850031--34850085
24
2.2
24
83
3
65
40
1
7
50
1.40
34850043--34850098
24
2.3
25
90
3
87
42
1
5
50
1.35
34850509--34850543
18
1.9
18
88
0
52
62
0
0
37
0.95
34852359--34852405
20
2.3
21
78
10
53
72
2
0
25
0.96
34859929--34860008
36
2.2
35
76
10
81
51
1
8
38
1.41
34860078--34860112
16
2.1
17
94
5
63
62
0
11
25
1.28
34861916--34863083
206
5.7
207
87
3
1603
29
21
17
31
1.96
34861916--34863083
411
2.8
409
87
3
1663
29
21
17
31
1.96
34874951--34875030
36
2.2
35
76
10
81
51
1
8
38
1.41
34875100--34875134
16
2.1
17
94
5
63
62
0
11
25
1.28
34880565--34880607
21
2.0
21
82
8
52
37
0
4
58
1.19
34880721--34880745
11
2.3
11
100
0
50
0
0
8
92
0.40
34884336--34884385
22
2.4
21
78
12
59
74
2
2
22
1.03
34889666--34889698
10
3.3
10
95
0
57
63
0
24
12
1.28
34893226--34893416
96
2.0
96
98
0
373
28
17
23
30
1.97
34904064--34904135
36
2.0
36
100
0
144
44
2
2
50
1.31
34906977--34907063
43
2.0
43
86
4
122
39
0
19
41
1.52
34910845--34911161
128
2.5
127
83
2
411
25
16
19
38
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34922651--34924186
137
11.2
137
97
0
2498
31
18
20
28
1.97
34924127--34924230
44
2.4
44
83
3
129
29
17
24
28
1.97
34926433--34926651
21
10.4
22
75
6
179
18
21
15
44
1.86
34926459--34926653
42
4.6
42
84
0
246
21
21
14
43
1.88
34926443--34926651
63
3.3
63
80
0
229
19
21
15
43
1.87
34926435--34926653
84
2.6
84
84
0
267
19
21
15
44
1.87
34929149--34929287
48
2.9
48
81
1
172
34
15
19
30
1.92
34929255--34929365
38
2.9
38
86
0
150
31
9
25
33
1.89
34938689--34938735
19
2.6
18
77
12
51
68
0
2
29
1.02
34939017--34939087
23
3.2
22
67
23
58
71
0
15
12
1.14
34939814--34940032
83
2.8
79
86
5
293
31
10
23
34
1.88
34953615--34953652
15
2.7
14
84
11
51
57
5
0
36
1.21
34957180--34957231
15
3.2
15
73
19
50
44
0
1
53
1.11
34957312--34957353
20
2.0
22
86
9
61
54
0
0
45
0.99
34957324--34957367
22
2.0
22
81
0
52
47
2
0
50
1.13
34961824--34961853
6
5.0
6
91
0
51
0
16
63
20
1.31
34968024--34968085
23
2.7
21
72
16
52
37
1
1
59
1.17
34971777--34971828
16
3.2
16
91
0
86
28
0
32
38
1.57
34971814--34971922
44
2.6
40
74
17
112
32
6
27
33
1.82
34972064--34972098
18
2.0
17
88
5
52
54
0
0
45
0.99
34975563--34975597
9
4.0
9
92
7
63
65
0
0
34
0.93
34975563--34975597
17
2.0
17
94
5
61
65
0
0
34
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34986780--34986903
46
2.7
46
88
3
169
33
27
20
18
1.96
34991593--34991665
31
2.3
31
83
2
92
60
19
5
15
1.54
34992368--34992462
46
2.1
46
95
0
172
56
4
4
34
1.38
34997598--34997656
9
6.6
9
86
0
82
28
1
23
45
1.63
34997599--34997656
27
2.1
27
93
0
98
29
1
22
46
1.62
34997655--34998331
241
2.8
241
99
0
1336
33
15
18
33
1.92
35000708--35000745
18
2.1
18
90
5
58
47
2
42
7
1.46
35000701--35000815
62
1.9
60
85
7
160
43
4
41
10
1.59
35000897--35001005
38
2.8
40
91
5
186
17
22
20
40
1.91
35000897--35001018
38
3.1
40
88
7
178
17
20
18
43
1.88
35001016--35001073
22
2.7
21
82
15
73
31
1
1
65
1.13
35001644--35001692
24
2.0
24
96
0
89
40
4
2
53
1.32
35002308--35002476
41
4.1
41
87
3
225
19
23
21
34
1.96
35006132--35006168
18
2.1
18
100
0
74
48
24
5
21
1.71
35006713--35006782
23
2.9
24
85
6
97
34
14
21
30
1.93
35006763--35006817
26
2.2
26
90
6
87
36
20
18
25
1.94
35011304--35011341
20
1.9
20
94
0
67
5
13
0
81
0.85
35012112--35012250
3
47.3
3
74
7
97
31
7
2
58
1.40
35012124--35012245
23
5.4
23
75
11
126
31
6
3
59
1.39
35013538--35013575
20
1.9
20
88
0
58
10
15
13
60
1.59
35017065--35017137
38
1.9
38
100
0
146
27
19
13
39
1.89
35019434--35020233
88
9.1
88
85
2
1016
33
21
23
21
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35019346--35020110
44
17.5
44
64
11
194
33
21
23
21
1.97
35020098--35020233
44
3.1
44
67
19
120
31
21
22
25
1.98
35020273--35020621
45
7.9
44
71
9
226
33
19
21
26
1.97
35020451--35020621
44
3.9
45
78
6
165
31
19
22
26
1.98
35020457--35020621
89
1.9
85
85
5
222
30
19
23
26
1.98
35020218--35020713
182
2.7
182
89
0
724
34
18
19
27
1.95
35021372--35021418
20
2.4
19
86
10
67
4
12
0
82
0.80
35022135--35022249
3
40.0
3
72
8
78
31
6
2
59
1.38
35022135--35022249
23
5.3
20
72
16
88
31
6
2
59
1.38
35022135--35022249
43
2.6
46
79
5
146
31
6
2
59
1.38
35022513--35022543
9
3.6
9
91
8
55
12
9
6
70
1.31
35022513--35022559
17
2.7
19
87
12
66
10
10
4
74
1.20
35028069--35028137
17
4.2
16
80
12
70
75
0
4
20
0.97
35028069--35028141
11
6.6
11
77
12
78
75
0
4
20
0.97
35028069--35028137
5
12.8
5
80
11
75
75
0
4
20
0.97
35029656--35029767
54
2.1
55
91
1
181
30
8
46
14
1.75
35030374--35030488
60
1.9
60
89
0
176
13
26
28
32
1.93
35032604--35032872
46
5.8
46
75
17
261
20
20
29
28
1.98
35032656--35032818
47
3.5
47
76
17
203
20
20
30
28
1.97
35032601--35032864
93
2.8
93
97
0
483
20
20
29
28
1.98
35037166--35037318
76
2.0
76
93
0
261
15
18
24
41
1.89
35057038--35057078
21
1.9
22
85
5
57
29
19
9
41
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35061934--35061967
16
2.1
16
88
0
50
50
14
17
17
1.79
35064775--35064815
21
2.0
21
90
0
64
29
21
29
19
1.98
35066273--35066307
18
2.0
17
88
5
52
54
0
0
45
0.99
35066635--35066669
18
2.0
17
88
5
52
54
0
0
45
0.99
35066253--35076154
120
82.2
120
97
1
18114
47
5
3
43
1.42
35066755--35066789
18
2.0
17
88
5
52
54
0
0
45
0.99
35067117--35067151
18
2.0
17
88
5
52
54
0
0
45
0.99
35066253--35076154
482
20.6
482
99
0
19391
47
5
3
43
1.42
35067237--35067271
18
2.0
17
88
5
52
54
0
0
45
0.99
35067599--35067633
18
2.0
17
88
5
52
54
0
0
45
0.99
35067719--35067753
18
2.0
17
88
5
52
54
0
0
45
0.99
35068081--35068115
18
2.0
17
88
5
52
54
0
0
45
0.99
35068201--35068235
18
2.0
17
88
5
52
54
0
0
45
0.99
35068563--35068597
18
2.0
17
88
5
52
54
0
0
45
0.99
35068683--35068717
18
2.0
17
88
5
52
54
0
0
45
0.99
35069045--35069079
18
2.0
17
88
5
52
54
0
0
45
0.99
35069165--35069199
18
2.0
17
88
5
52
54
0
0
45
0.99
35069527--35069561
18
2.0
17
88
5
52
54
0
0
45
0.99
35069647--35069681
18
2.0
17
88
5
52
54
0
0
45
0.99
35070009--35070043
18
2.0
17
88
5
52
54
0
0
45
0.99
35070129--35070163
18
2.0
17
88
5
52
54
0
0
45
0.99
35070491--35070525
18
2.0
17
88
5
52
54
0
0
45
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35070611--35070645
18
2.0
17
88
5
52
54
0
0
45
0.99
35070973--35071007
18
2.0
17
88
5
52
54
0
0
45
0.99
35071093--35071127
18
2.0
17
88
5
52
54
0
0
45
0.99
35071455--35071489
18
2.0
17
88
5
52
54
0
0
45
0.99
35071575--35071609
18
2.0
17
88
5
52
54
0
0
45
0.99
35071937--35071971
18
2.0
17
88
5
52
54
0
0
45
0.99
35072057--35072091
18
2.0
17
88
5
52
54
0
0
45
0.99
35072419--35072453
18
2.0
17
88
5
52
54
0
0
45
0.99
35072539--35072573
18
2.0
17
88
5
52
54
0
0
45
0.99
35072901--35072935
18
2.0
17
88
5
52
54
0
0
45
0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279