genome.fa.s8.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  148  of  279  ( 33431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48126785--48126866	42	2.0	42	87	4	121	21	26	32	18	1.97
48128653--48128711	20	3.0	20	78	11	68	54	3	3	38	1.34
48135859--48135998	41	3.4	41	83	8	153	30	20	22	27	1.98
48135880--48136002	40	3.0	41	87	8	171	31	21	23	22	1.98
48138386--48138422	19	2.0	19	85	15	51	35	0	0	64	0.94
48138818--48138857	13	3.1	13	89	7	55	37	5	7	50	1.53
48148729--48148766	6	6.3	6	100	0	76	84	0	0	15	0.63
48157513--48157556	21	2.2	19	84	15	54	31	2	2	63	1.19
48161839--48161912	27	2.8	26	82	11	105	31	12	9	47	1.73
48174759--48174878	59	2.0	59	98	0	231	40	10	15	33	1.81
48176193--48176254	23	2.6	24	92	2	99	35	24	25	14	1.93
48176366--48176409	21	2.1	21	87	8	63	31	36	0	31	1.58
48179981--48180007	13	2.1	13	100	0	54	51	0	11	37	1.37
48180061--48180153	9	10.6	9	76	11	68	48	17	0	34	1.47
48180070--48180153	36	2.4	34	96	4	150	48	16	0	34	1.47
48187131--48187367	33	6.7	34	69	25	145	31	25	21	21	1.98
48187167--48187435	103	2.6	103	95	1	477	32	24	21	21	1.98
48188503--48188536	11	2.8	12	91	8	52	35	8	11	44	1.72
48188696--48188879	42	4.3	43	82	7	196	22	15	28	34	1.94
48188666--48188879	43	5.0	43	80	6	204	21	14	29	33	1.94
48188666--48188883	85	2.6	85	83	4	253	22	14	29	33	1.94
48197126--48197181	19	2.9	19	84	12	62	3	19	0	76	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48197138--48197208	23	2.8	24	81	14	72	4	18	1	76	1.03
48197796--48198428	316	2.0	316	95	0	1140	26	17	26	29	1.97
48204849--48205464	308	2.0	308	100	0	1232	30	12	18	38	1.87
48209739--48209801	32	2.0	32	96	3	119	31	9	15	42	1.79
48210199--48210329	63	2.1	63	88	0	190	24	24	26	24	2.00
48211154--48211196	20	2.2	20	86	0	59	9	39	13	37	1.78
48215390--48215533	59	2.6	58	83	7	174	29	24	20	25	1.99
48215511--48215683	54	3.2	53	85	3	229	28	13	21	35	1.92
48220803--48220868	28	2.4	27	77	7	78	31	24	24	19	1.98
48221041--48221087	22	2.1	22	84	0	58	48	14	14	21	1.80
48221145--48221281	32	4.3	32	73	3	105	37	21	21	20	1.95
48227873--48227928	21	2.7	19	79	15	58	39	1	7	51	1.40
48242962--48243037	26	2.9	26	78	7	82	43	10	15	30	1.81
48243752--48244176	210	2.0	210	96	0	787	31	10	18	39	1.84
48249468--48249580	49	2.3	49	87	0	154	46	22	14	17	1.84
48252002--48252129	65	2.0	65	92	0	211	33	16	16	33	1.91
48254580--48254613	17	1.9	18	88	5	52	61	0	26	11	1.30
48258779--48259134	140	2.6	138	76	7	348	38	5	23	31	1.79
48261432--48261523	44	2.1	44	91	0	148	38	15	14	32	1.87
48263275--48263325	20	2.6	19	85	11	68	54	0	11	33	1.37
48265637--48265808	14	12.3	14	72	4	105	33	20	11	33	1.89
48265671--48265815	42	3.5	42	75	9	125	34	22	11	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48265698--48265815	42	2.8	42	78	0	128	33	23	12	29	1.92
48267018--48267337	42	7.3	42	86	8	390	28	31	17	19	1.94
48270296--48270695	200	2.0	200	99	0	782	41	20	11	26	1.86
48271500--48271543	23	1.9	23	86	9	63	68	2	20	9	1.28
48272249--48272502	134	1.9	135	95	2	456	35	8	6	49	1.59
48273410--48273678	41	6.6	41	84	4	348	30	23	22	23	1.99
48273410--48273678	123	2.2	122	87	3	389	30	23	22	23	1.99
48273726--48273861	40	3.4	39	77	8	132	17	19	22	39	1.92
48275562--48275618	29	1.9	30	85	3	80	31	0	7	61	1.23
48276351--48276383	17	1.9	17	93	0	57	63	3	9	24	1.38
48276596--48276651	29	1.9	29	81	0	67	51	5	0	42	1.24
48276971--48277024	19	2.8	19	86	13	67	62	0	0	37	0.95
48278630--48278714	41	2.1	41	100	0	170	34	22	2	41	1.67
48279343--48279438	31	3.1	31	95	3	174	45	13	9	31	1.75
48280587--48280613	13	2.1	13	100	0	54	48	22	0	29	1.51
48282952--48283075	49	2.5	49	89	2	185	33	29	12	24	1.93
48284617--48284747	67	2.0	67	93	0	226	28	34	16	20	1.95
48284870--48285017	57	2.5	59	83	9	185	22	25	20	31	1.98
48291666--48291714	23	2.1	24	84	3	64	30	18	4	46	1.67
48294728--48294769	13	3.2	13	83	10	50	80	0	16	2	0.81
48297457--48297531	26	2.9	26	80	2	71	32	16	13	38	1.87
48298479--48298553	26	2.9	26	80	2	71	32	16	13	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48302026--48302051	12	2.2	12	100	0	52	34	7	15	42	1.75
48302043--48302089	23	2.0	24	87	4	69	38	6	17	38	1.75
48302571--48302605	17	2.1	17	94	0	61	37	11	0	51	1.38
48302697--48302780	27	3.1	26	80	11	80	35	3	4	55	1.38
48302692--48302760	29	2.4	29	79	11	70	36	2	4	56	1.34
48316717--48316776	19	3.2	19	81	6	61	60	1	0	38	1.07
48320178--48320234	20	2.8	20	92	5	89	29	24	8	36	1.86
48324041--48324066	11	2.4	11	100	0	52	53	0	7	38	1.30
48324390--48324430	2	20.5	2	100	0	82	0	48	0	51	1.00
48324696--48324792	49	2.0	48	89	2	149	41	22	15	20	1.90
48341652--48341841	99	1.9	99	88	2	283	22	17	20	39	1.92
48349910--48349967	27	2.2	25	87	6	80	25	0	31	43	1.55
48349950--48349987	20	2.0	20	89	5	60	18	0	36	44	1.50
48350044--48350098	15	3.7	15	86	11	78	25	0	20	54	1.44
48350157--48350197	21	2.0	21	85	0	55	26	2	21	48	1.63
48350163--48350248	44	2.0	44	83	4	111	22	1	20	55	1.50
48350201--48350242	21	2.0	21	90	0	66	19	0	21	59	1.38
48350208--48350299	36	2.6	36	79	16	95	28	0	17	54	1.43
48350245--48350296	14	3.8	14	79	2	61	32	0	15	51	1.43
48350286--48350334	19	2.5	19	80	9	55	24	0	28	46	1.53
48350319--48350438	35	3.5	35	75	15	115	20	1	23	54	1.54
48350459--48350541	35	2.3	36	81	6	96	27	0	21	50	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48350495--48350605	37	3.0	36	75	9	100	29	0	18	50	1.53
48350559--48350695	14	9.3	15	69	15	56	31	0	21	46	1.52
48350631--48351274	7	88.4	7	66	15	184	26	0	25	46	1.59
48350654--48350846	29	6.6	28	71	14	106	27	1	23	47	1.59
48350610--48350724	45	2.6	44	80	16	114	27	0	23	47	1.57
48350566--48351274	22	32.8	22	68	17	203	27	0	24	46	1.58
48350893--48350960	29	2.4	28	80	7	75	27	0	23	48	1.51
48350631--48351274	15	44.2	14	67	15	184	26	0	25	46	1.59
48351093--48351276	36	5.1	37	71	15	98	25	0	25	48	1.55
48351145--48351291	22	6.9	22	76	12	74	27	0	25	46	1.53
48351385--48351436	13	4.0	13	77	5	52	23	0	25	51	1.48
48351407--48351455	19	2.5	20	83	9	57	26	2	22	48	1.61
48352091--48352119	15	1.9	15	100	0	58	41	31	6	20	1.79
48356809--48357318	171	3.0	171	99	0	1011	26	15	18	39	1.91
48364201--48364279	25	3.1	24	74	15	70	64	1	0	34	1.02
48364519--48364582	31	2.1	31	88	2	94	57	1	1	39	1.17
48367933--48367963	5	6.2	5	100	0	62	19	19	19	41	1.90
48368080--48368120	22	1.9	22	85	5	57	56	4	2	36	1.34
48368935--48368984	19	2.6	19	90	3	73	68	6	8	18	1.36
48368993--48369022	14	2.1	15	93	6	53	70	6	6	16	1.31
48374714--48374841	53	2.4	53	77	0	139	39	22	17	20	1.93
48375479--48375512	10	3.5	10	88	4	52	29	8	17	44	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48379329--48379609	66	4.3	66	84	3	379	27	25	3	43	1.71
48379768--48379849	30	2.7	31	81	7	87	40	3	2	53	1.32
48380169--48380448	124	2.3	124	85	4	368	28	14	23	32	1.94
48380358--48380560	84	2.4	84	99	0	397	23	21	23	32	1.98
48383847--48384185	51	6.7	50	81	14	340	30	0	22	46	1.52
48383847--48384180	23	13.1	27	78	15	356	30	0	22	47	1.52
48387488--48387625	69	2.0	69	95	0	249	7	37	19	34	1.81
48388746--48388787	22	1.9	22	90	0	66	33	0	33	33	1.58
48388792--48388880	22	4.0	22	87	8	119	44	0	25	29	1.54
48390679--48390733	16	3.7	15	78	14	60	47	16	3	32	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279