genome.fa.s8.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  154  of  279  ( 33431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50393141--50393368	42	5.4	42	80	8	223	30	20	21	28	1.98
50402217--50402322	52	2.0	52	98	0	203	47	4	7	40	1.53
50402347--50402546	41	4.8	41	72	8	120	35	27	16	21	1.94
50406021--50406138	43	2.7	43	86	0	173	31	26	18	23	1.98
50407434--50407461	12	2.3	12	100	0	56	50	10	7	32	1.64
50408290--50408369	31	2.6	31	89	0	124	43	22	13	20	1.86
50409793--50409833	21	2.0	21	90	0	64	51	26	2	19	1.59
50409905--50409958	7	7.9	7	77	4	56	42	40	1	14	1.57
50409906--50409945	21	1.9	21	89	0	62	42	42	2	12	1.56
50410237--50410344	40	2.7	40	78	5	121	21	23	18	37	1.95
50410237--50410336	39	2.5	40	79	6	105	23	24	17	36	1.95
50416151--50416203	22	2.5	22	87	3	72	52	1	5	39	1.36
50424557--50424754	63	3.2	62	73	7	211	20	29	23	26	1.99
50428324--50428383	18	3.4	18	71	17	63	20	18	15	46	1.84
50428316--50428383	34	2.0	34	94	0	118	20	17	17	44	1.87
50434158--50434207	3	16.7	3	82	0	64	36	6	0	58	1.23
50434157--50434207	15	3.4	15	94	0	93	35	7	0	56	1.28
50434491--50434543	12	4.3	12	75	20	56	20	3	7	67	1.31
50438077--50438138	6	10.7	6	80	11	51	70	9	4	14	1.29
50438083--50438190	29	4.0	28	72	13	84	73	8	7	11	1.26
50438109--50438133	7	3.6	7	100	0	50	76	12	0	12	1.04
50438103--50438217	51	2.2	53	81	12	139	73	6	10	9	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50439734--50439784	17	3.0	17	100	0	102	29	17	29	23	1.97
50440263--50441734	44	33.8	44	70	13	523	30	19	22	27	1.98
50440261--50441347	219	5.0	219	84	5	1435	30	19	22	27	1.98
50440481--50440911	174	2.5	175	86	4	618	30	20	21	27	1.98
50441093--50441477	175	2.2	175	82	4	458	29	18	22	28	1.98
50440266--50441735	129	11.2	129	71	12	695	30	19	21	27	1.98
50441617--50442018	218	1.8	218	86	3	585	27	20	25	26	1.99
50441449--50441899	44	10.4	44	69	11	130	29	20	23	26	1.99
50441663--50441988	44	7.5	44	72	10	154	26	20	25	27	1.99
50441617--50442070	218	2.1	216	83	6	560	27	21	24	26	1.99
50443744--50443799	3	18.7	3	84	0	76	35	5	0	58	1.21
50450704--50450745	22	1.9	22	90	0	66	40	4	0	54	1.21
50454251--50454287	9	4.1	9	92	0	65	29	10	13	45	1.77
50455064--50455233	85	2.0	85	81	6	200	37	16	10	35	1.83
50455246--50455301	26	2.2	26	87	6	78	39	12	10	37	1.78
50455371--50455462	19	4.8	19	76	9	71	65	1	3	30	1.16
50455418--50455511	20	4.8	19	69	18	59	64	4	3	27	1.27
50455477--50455521	21	2.2	21	88	4	65	66	6	0	26	1.16
50455702--50455763	19	3.2	20	76	15	69	25	9	3	61	1.42
50455700--50455762	20	3.2	21	76	17	73	25	9	3	61	1.41
50455770--50455882	51	2.2	52	80	4	122	27	4	1	66	1.21
50455847--50455910	29	2.2	28	83	10	76	29	1	4	64	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50456611--50456656	18	2.6	18	77	16	51	26	4	0	69	1.07
50456868--50456905	14	2.7	14	80	15	51	36	2	0	60	1.11
50461362--50461625	42	6.2	42	88	4	334	26	31	18	22	1.97
50461362--50461625	85	3.1	83	86	4	348	26	31	18	22	1.97
50462551--50463005	23	20.0	23	69	14	117	41	24	5	28	1.78
50462548--50462995	91	4.9	91	96	1	776	41	24	5	29	1.77
50463340--50463423	39	2.1	39	84	4	105	51	7	10	30	1.64
50465372--50466066	147	4.8	147	89	3	1080	26	15	13	45	1.83
50465372--50466066	288	2.4	290	88	3	1045	26	15	13	45	1.83
50466441--50466511	15	4.9	14	81	11	65	36	40	0	22	1.54
50466456--50466501	14	3.2	14	87	9	58	30	47	0	21	1.51
50466523--50466571	14	3.4	14	80	5	62	38	34	0	26	1.57
50466717--50466770	21	2.7	20	76	2	54	37	38	1	22	1.65
50466764--50466819	7	7.9	7	82	4	58	33	46	0	19	1.50
50466761--50466819	21	2.8	21	78	2	64	37	44	0	18	1.50
50466520--50467105	267	2.2	266	92	2	969	41	27	1	28	1.66
50467024--50467159	7	18.9	7	76	8	76	35	44	0	20	1.52
50467023--50467177	72	2.1	73	89	2	249	34	43	0	21	1.53
50467043--50467199	72	2.2	72	84	2	199	38	39	0	22	1.54
50467592--50467682	41	2.2	41	98	0	173	24	32	24	18	1.97
50467479--50467798	155	2.1	154	90	0	505	24	28	23	24	2.00
50467635--50467886	114	2.2	114	86	7	370	24	26	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50468283--50468347	30	2.2	30	91	2	105	40	3	26	30	1.71
50470813--50470865	25	2.2	24	90	10	81	39	20	20	18	1.92
50471342--50471385	21	2.1	21	86	0	61	40	25	0	34	1.56
50474750--50474793	14	2.8	16	86	10	56	29	2	4	63	1.26
50476162--50476225	29	2.2	29	86	5	85	42	4	23	29	1.74
50486191--50486604	103	4.0	103	98	0	794	48	4	11	35	1.61
50493785--50493810	3	8.7	3	100	0	52	34	30	0	34	1.58
50494202--50494243	20	2.1	20	90	0	66	50	0	7	42	1.30
50499297--50499338	20	2.1	20	90	0	66	50	0	7	42	1.30
50503843--50503867	1	25.0	1	100	0	50	0	100	0	0	0.00
50513812--50513972	41	3.9	40	79	6	162	26	25	19	28	1.99
50517882--50517976	40	2.3	42	76	8	106	26	28	17	27	1.98
50521537--50521589	16	3.5	14	82	17	54	0	26	3	69	1.05
50521556--50521595	21	1.9	21	89	0	62	0	30	5	65	1.14
50521534--50521590	13	4.6	12	76	12	53	0	28	3	68	1.06
50521718--50521774	16	3.6	16	95	0	87	29	0	36	33	1.58
50522020--50522054	18	2.0	17	88	5	52	54	0	0	45	0.99
50522154--50522195	15	2.7	16	82	14	52	52	2	0	45	1.13
50521907--50522204	154	1.9	156	95	2	537	44	3	5	47	1.40
50522163--50522204	15	2.9	15	82	10	52	52	0	0	47	1.00
50523394--50523420	11	2.5	11	100	0	54	51	18	7	22	1.70
50525318--50525474	76	2.1	76	100	0	314	43	3	3	49	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50526938--50526993	21	2.6	21	91	2	85	41	25	12	21	1.88
50528061--50528196	33	4.3	33	78	12	167	61	13	17	7	1.55
50528127--50528181	18	3.2	17	71	23	53	61	16	14	7	1.54
50571868--50571892	6	4.2	6	100	0	50	16	32	20	32	1.94
50572269--50572318	26	1.9	26	84	8	66	34	0	4	62	1.14
50581562--50581626	19	3.4	19	68	6	51	63	3	4	29	1.30
50581848--50581932	9	8.9	9	74	14	64	32	2	1	63	1.15
50581844--50581983	10	14.2	10	66	18	62	35	2	0	62	1.13
50581870--50581981	19	5.7	20	72	10	79	33	2	0	64	1.08
50581850--50581983	19	6.8	20	66	17	75	33	2	0	63	1.12
50582783--50582814	13	2.4	13	94	5	55	90	0	9	0	0.45
50582783--50582814	16	2.0	16	93	0	55	90	0	9	0	0.45
50593021--50593060	21	2.0	20	85	9	55	50	2	0	47	1.14
50598118--50598208	42	2.2	42	86	4	130	20	19	16	42	1.89
50600499--50600577	39	2.0	40	90	2	124	39	16	20	24	1.92
50600424--50600577	40	3.8	39	75	7	139	36	18	22	23	1.95
50600613--50600728	41	2.8	40	88	6	162	21	20	30	27	1.98
50600946--50601020	21	3.5	22	75	8	75	28	0	30	41	1.56
50600962--50601002	14	2.9	15	82	10	59	29	0	31	39	1.57
50601015--50601077	22	2.9	22	85	4	74	19	0	42	38	1.51
50601108--50601150	11	3.8	12	78	9	54	30	0	0	69	0.88
50601107--50601160	23	2.3	24	84	6	76	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50601358--50601398	21	2.0	21	95	0	73	26	0	43	29	1.55
50601355--50601408	21	2.5	20	82	11	72	24	0	42	33	1.55
50605953--50606155	43	4.8	42	86	6	221	28	17	28	26	1.97
50605953--50606155	85	2.4	85	84	3	255	28	17	28	26	1.97
50606225--50606269	22	2.1	21	87	4	63	40	31	17	11	1.85
50615258--50615299	15	2.8	15	78	10	50	45	4	0	50	1.23
50630298--50630729	214	2.0	215	93	1	742	37	17	14	30	1.89
50632181--50632261	26	2.9	28	81	12	94	54	1	2	41	1.21
50632181--50632279	19	5.2	19	69	15	71	54	2	3	40	1.27
50638673--50638721	23	2.1	23	81	7	55	14	6	14	65	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279