genome.fa.s8.2.7.7.80.10.50.1000.192.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  192  of  279  ( 33431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63005776--63005864	19	4.8	19	86	8	139	39	11	13	35	1.80
63005776--63005887	19	5.7	22	81	14	83	38	9	14	37	1.79
63006154--63006189	18	1.9	19	88	5	56	30	0	0	69	0.89
63014300--63014460	89	1.8	87	82	5	207	31	16	22	29	1.96
63014183--63014747	220	2.6	220	91	1	882	32	17	21	28	1.96
63014714--63014978	78	3.4	77	86	2	377	32	17	23	26	1.97
63014949--63015123	45	3.9	45	89	1	262	30	14	29	25	1.95
63014949--63015126	89	2.0	90	90	3	279	30	15	29	24	1.95
63015469--63015546	19	4.4	19	87	10	94	37	12	12	37	1.82
63015477--63015546	19	3.8	19	90	9	119	37	11	14	37	1.82
63015469--63015547	36	2.2	34	85	12	106	37	12	12	36	1.82
63015837--63015870	17	1.9	18	88	5	52	32	0	0	67	0.91
63017048--63017080	17	1.9	18	88	11	52	48	0	9	42	1.35
63018236--63018293	29	2.0	29	100	0	116	31	6	27	34	1.83
63019884--63019950	26	2.3	27	80	17	73	62	0	5	31	1.19
63019884--63019961	29	2.7	27	81	11	84	61	0	6	32	1.21
63020024--63020106	34	2.6	30	74	18	71	57	3	1	37	1.24
63020026--63020162	5	27.0	5	66	16	59	58	2	1	37	1.22
63020024--63020162	36	4.0	36	74	12	114	58	2	1	37	1.22
63020110--63020159	26	2.0	26	92	4	84	60	0	2	38	1.09
63020252--63020281	16	1.9	16	93	6	53	66	0	6	26	1.16
63026140--63026214	23	3.3	22	71	17	64	36	17	25	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63028059--63028425	130	2.8	130	80	4	407	33	17	19	29	1.95
63029419--63029464	23	2.0	23	100	0	92	52	4	4	39	1.41
63031351--63031869	132	3.9	132	84	1	583	29	24	16	29	1.97
63040481--63040525	22	2.0	22	95	0	81	6	37	8	46	1.61
63043470--63043811	130	2.6	129	76	6	325	35	17	18	27	1.94
63043509--63043941	130	3.3	127	78	7	390	34	18	19	27	1.95
63045091--63045115	2	12.5	2	100	0	50	52	0	0	48	1.00
63047760--63047818	16	3.2	17	77	22	66	52	0	0	47	1.00
63047765--63047808	22	2.0	22	86	8	63	54	0	0	45	0.99
63047828--63047869	13	2.9	14	80	13	50	54	0	0	45	0.99
63047832--63047868	16	2.3	16	86	13	58	59	0	0	40	0.97
63047901--63047956	15	3.5	15	71	19	51	51	0	0	48	1.00
63050863--63050898	19	1.9	18	94	5	63	66	13	0	19	1.24
63053857--63053905	21	2.4	21	89	3	73	22	10	6	61	1.50
63054283--63054315	16	2.1	16	88	11	50	33	3	0	63	1.10
63061198--63061248	9	5.7	9	76	15	52	33	1	1	62	1.17
63070755--63070852	29	3.2	32	76	13	91	36	1	0	62	1.02
63071290--63071357	34	2.0	34	97	0	127	41	19	8	30	1.82
63072912--63072956	21	2.1	21	83	0	54	24	17	6	51	1.70
63074716--63074887	63	2.7	63	80	3	177	34	35	4	25	1.77
63078588--63078684	49	2.0	49	95	0	176	34	14	13	38	1.85
63086551--63086616	13	5.1	13	79	0	60	31	22	9	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63091600--63091656	21	2.8	20	76	7	60	21	15	19	43	1.87
63091661--63091721	30	2.0	30	90	6	97	36	21	19	22	1.95
63094654--63094686	16	2.1	16	88	5	50	45	0	9	45	1.35
63100776--63100834	26	2.2	26	76	8	66	54	3	8	33	1.48
63100995--63101128	25	5.1	25	74	12	117	54	4	7	33	1.49
63101175--63101224	21	2.5	20	84	9	59	58	6	2	34	1.34
63101218--63101263	15	3.1	15	87	9	58	63	0	4	32	1.14
63101216--63101290	18	4.5	17	73	20	68	60	0	4	36	1.16
63101224--63101271	25	2.0	24	91	4	78	62	0	4	33	1.14
63104245--63104273	5	5.8	5	100	0	58	17	0	0	82	0.66
63120698--63120731	17	1.9	18	88	5	52	47	2	0	50	1.16
63121285--63121355	27	2.6	27	90	0	106	25	7	25	42	1.80
63122038--63122104	21	3.2	20	71	14	55	25	0	22	52	1.47
63122138--63122180	22	2.0	21	82	13	52	25	0	23	51	1.49
63123533--63123563	16	1.9	16	93	0	53	74	9	6	9	1.23
63123806--63123871	21	3.1	22	71	18	59	27	1	21	50	1.58
63124406--63124439	7	4.9	7	85	0	50	26	2	26	44	1.69
63124656--63124724	29	2.4	29	81	15	81	28	1	20	49	1.58
63124870--63124990	27	4.5	25	72	14	80	19	1	26	52	1.55
63124900--63124985	14	6.3	14	71	9	70	17	1	29	52	1.52
63124892--63124985	20	4.6	21	72	15	63	18	1	27	53	1.51
63125213--63125366	20	7.6	20	66	17	61	19	0	24	56	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63125213--63125372	7	23.6	7	72	13	86	19	0	24	56	1.42
63125213--63125372	13	11.8	13	67	18	78	19	0	24	56	1.42
63125327--63125384	28	2.1	28	83	6	73	20	1	24	53	1.55
63125306--63125431	20	6.2	20	68	15	71	22	1	20	55	1.52
63125522--63125565	21	2.1	21	86	0	61	22	2	20	54	1.56
63125708--63125767	14	4.4	14	83	6	79	20	0	31	48	1.50
63125695--63125766	20	3.5	20	81	7	92	20	0	29	50	1.49
63125695--63125767	7	10.7	7	75	11	62	20	0	30	49	1.49
63125726--63125785	27	2.2	27	80	11	70	18	0	28	53	1.45
63125826--63125896	20	3.6	20	75	17	60	22	0	22	54	1.44
63125885--63125931	7	6.9	7	82	2	60	14	0	29	55	1.40
63126000--63126034	13	2.7	13	90	0	61	22	2	28	45	1.67
63125826--63126061	13	17.3	13	65	17	54	21	0	24	53	1.51
63126085--63126124	21	1.9	21	85	10	55	25	0	17	57	1.40
63126334--63126565	7	33.9	7	75	14	139	25	0	24	50	1.55
63126207--63126573	20	18.2	20	66	20	112	26	1	22	48	1.60
63126363--63126573	34	6.1	34	71	16	134	25	0	23	50	1.56
63126334--63126602	27	9.9	26	72	13	143	24	1	23	50	1.56
63127222--63127280	3	21.0	3	76	13	54	1	28	1	67	1.10
63127219--63127278	11	5.5	11	72	7	50	1	28	1	68	1.09
63127222--63127278	14	3.9	14	78	17	62	1	28	1	68	1.09
63130199--63130244	15	3.0	15	83	3	56	26	8	17	47	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63142091--63142209	64	1.9	63	92	1	202	36	26	16	21	1.94
63143267--63143318	21	2.4	21	90	3	86	51	15	0	32	1.43
63148531--63148739	52	4.0	52	99	0	411	47	21	7	22	1.76
63150604--63150641	16	2.3	18	86	13	55	73	0	15	10	1.09
63161345--63161425	40	2.0	40	85	2	108	54	13	18	13	1.71
63162260--63162587	88	3.7	89	88	3	462	28	16	21	33	1.95
63162516--63162741	79	2.9	77	88	2	353	28	15	22	32	1.95
63162516--63162759	77	3.1	77	86	2	344	29	15	20	33	1.94
63164576--63164697	3	40.0	3	69	12	61	31	5	4	58	1.43
63165134--63165189	30	2.0	27	86	10	76	35	5	3	55	1.40
63168651--63168737	45	1.9	45	85	0	120	43	12	19	24	1.85
63183157--63183239	6	13.8	6	87	5	123	21	31	16	30	1.96
63183153--63183249	18	5.4	18	90	2	151	24	29	16	28	1.97
63185812--63186176	188	1.9	190	93	2	628	43	21	14	21	1.88
63187285--63187313	14	2.0	15	93	6	51	55	10	20	13	1.68
63192127--63192201	9	8.3	9	89	0	96	45	21	8	25	1.79
63192214--63192254	6	6.5	6	83	10	55	17	0	4	78	0.93
63194560--63194618	26	2.3	26	87	0	82	23	40	11	23	1.88
63199002--63199043	17	2.5	17	88	3	59	66	2	26	4	1.23
63202415--63202456	22	1.9	22	85	9	59	38	33	11	16	1.86
63203697--63203735	21	1.9	21	84	5	53	41	5	2	51	1.38
63212234--63212283	20	2.5	19	87	6	73	36	16	10	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63212472--63212522	25	2.0	25	100	0	102	11	19	23	45	1.83
63218130--63218172	22	2.0	22	86	9	61	37	0	9	53	1.33
63218358--63218382	6	4.2	6	100	0	50	68	0	0	32	0.90
63218326--63218370	23	1.9	24	81	4	56	37	2	6	53	1.40
63225992--63226061	34	2.1	34	97	0	131	17	15	31	35	1.91
63230728--63230788	20	2.9	21	81	11	72	52	19	1	26	1.55
63230728--63230789	22	3.0	21	83	9	74	53	19	1	25	1.54
63233889--63233914	3	8.7	3	100	0	52	34	0	0	65	0.93
63234740--63234980	36	6.1	36	69	17	140	62	12	4	20	1.48
63234739--63234990	82	3.1	82	100	0	504	62	12	4	20	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279