genome.fa.s8.2.7.7.80.10.50.1000.203.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  203  of  279  ( 33431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66343844--66343986	68	2.1	67	83	3	171	42	16	13	27	1.85
66346461--66346500	20	2.0	20	85	4	55	55	0	2	42	1.13
66357844--66357893	25	1.9	27	92	8	86	60	12	2	26	1.43
66358310--66358359	10	4.5	11	79	20	52	46	0	0	54	1.00
66358772--66358813	22	1.9	22	85	9	59	38	2	2	57	1.25
66360881--66360943	31	2.0	32	81	3	74	22	15	28	33	1.95
66361314--66361449	59	2.4	56	79	12	152	36	12	8	43	1.72
66361333--66361449	59	2.0	58	85	6	157	35	11	7	44	1.70
66361885--66361991	56	1.9	56	81	7	128	41	5	14	38	1.70
66368459--66368510	22	2.3	23	78	18	56	50	1	17	30	1.57
66369456--66369516	30	2.0	30	100	0	122	29	9	22	37	1.87
66369686--66369755	35	2.0	35	97	0	131	38	20	15	25	1.92
66370859--66371027	86	2.0	85	98	1	329	30	18	26	24	1.97
66374088--66374525	146	3.0	145	88	3	675	28	6	7	57	1.50
66375018--66375051	12	2.8	12	95	0	59	0	20	0	79	0.73
66375012--66375049	18	2.1	18	90	0	58	0	26	0	73	0.83
66375251--66375303	27	2.0	27	100	0	106	7	37	33	20	1.81
66375578--66375651	39	1.9	37	86	5	103	54	1	0	44	1.08
66376485--66376568	44	1.9	44	82	4	107	32	26	5	35	1.81
66378722--66378819	25	3.9	25	74	12	94	25	19	21	33	1.97
66378715--66378810	50	1.9	50	87	4	140	25	20	20	33	1.97
66378713--66378823	50	2.2	50	82	6	136	26	18	21	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66382341--66382384	22	1.9	22	86	9	61	72	13	13	0	1.12
66386604--66386779	87	2.0	86	90	1	271	36	12	10	40	1.77
66386764--66386829	28	2.4	28	95	5	118	43	6	6	43	1.53
66387409--66387442	16	2.1	16	88	0	50	23	41	0	35	1.55
66389347--66389412	6	10.5	6	75	6	51	16	1	7	74	1.12
66389335--66389411	24	3.5	21	78	16	75	16	2	6	74	1.15
66391065--66391121	27	2.1	28	86	3	80	45	7	7	40	1.58
66391620--66391654	18	1.9	18	88	0	52	65	2	14	17	1.38
66392551--66392590	10	3.9	10	86	3	53	32	0	22	45	1.53
66392550--66392591	20	2.0	21	90	4	68	30	0	21	47	1.51
66396854--66396886	16	2.0	17	94	5	59	45	0	0	54	0.99
66398097--66398135	20	2.0	20	89	0	60	58	2	2	35	1.25
66398092--66398177	37	2.3	36	84	4	100	63	3	1	31	1.18
66398092--66398184	9	10.0	9	71	18	66	63	3	1	32	1.17
66398828--66398920	10	10.1	9	73	15	57	37	1	2	59	1.17
66398828--66398936	18	5.8	18	71	19	80	36	0	1	60	1.14
66398813--66398908	26	3.6	26	81	14	99	32	2	2	63	1.18
66398828--66398936	10	11.5	10	68	25	51	36	0	1	60	1.14
66399183--66399285	10	11.6	9	72	15	65	32	0	3	64	1.12
66399183--66399245	19	3.4	19	76	8	60	31	0	3	65	1.09
66399183--66399280	27	3.6	26	73	21	69	32	0	4	63	1.13
66400697--66400723	3	9.0	3	100	0	54	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66406529--66406572	17	2.4	19	85	7	56	63	4	2	29	1.26
66407296--66407335	16	2.5	15	80	11	53	75	5	2	17	1.10
66407837--66407914	17	4.6	16	71	16	50	48	1	2	47	1.23
66410757--66411131	177	2.1	177	90	0	588	26	21	21	30	1.98
66411050--66411253	45	4.6	45	69	16	163	30	23	19	27	1.98
66411035--66411431	133	3.0	133	92	0	623	29	21	18	29	1.97
66410757--66411184	177	2.4	176	84	2	383	27	22	20	30	1.98
66421549--66421582	16	2.1	17	94	5	61	64	0	11	23	1.26
66425184--66425228	23	2.0	22	82	4	54	71	0	20	8	1.12
66425692--66425809	57	2.1	58	91	1	193	27	21	4	46	1.69
66426205--66426229	12	2.1	12	100	0	50	60	16	8	16	1.58
66428724--66428762	13	3.0	13	82	10	53	66	0	2	30	1.05
66439187--66439240	27	2.0	27	85	3	74	33	7	24	35	1.83
66441485--66441514	15	2.0	15	93	0	51	76	6	0	16	0.99
66444619--66444835	46	4.7	46	91	1	310	39	15	24	21	1.91
66444570--66444835	138	2.0	130	86	7	363	38	15	24	21	1.92
66445096--66445142	25	2.0	25	83	8	62	53	4	14	27	1.60
66446785--66446828	22	2.0	22	95	0	79	36	15	13	34	1.87
66447724--66447749	12	2.2	12	100	0	52	50	7	0	42	1.31
66453993--66454023	11	2.7	12	95	5	55	67	0	0	32	0.91
66454113--66454195	34	2.4	34	93	2	139	39	14	1	44	1.53
66457470--66457509	18	2.1	18	86	9	53	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66457871--66457917	19	2.5	19	89	6	69	44	0	0	55	0.99
66457981--66458018	18	2.1	18	90	9	60	42	0	5	52	1.24
66463180--66463232	26	2.0	26	96	0	97	52	9	13	24	1.69
66465241--66465361	38	3.2	37	82	2	134	13	19	27	40	1.88
66465344--66465384	22	1.9	22	90	5	66	17	14	24	43	1.86
66467655--66467716	26	2.2	29	78	13	69	37	3	16	43	1.64
66474706--66474739	12	2.8	12	90	0	50	26	47	20	5	1.73
66479839--66479870	7	4.6	7	100	0	64	71	28	0	0	0.86
66507765--66507815	24	2.1	24	100	0	102	43	0	11	45	1.40
66508782--66508858	31	2.5	31	82	2	93	41	11	10	36	1.76
66509384--66509432	25	2.0	24	92	4	80	55	2	0	42	1.11
66509718--66509742	6	4.2	6	100	0	50	32	0	68	0	0.90
66509752--66509805	25	2.2	24	87	6	81	42	0	1	55	1.10
66509788--66509813	12	2.2	12	100	0	52	61	0	0	38	0.96
66509901--66509976	10	7.5	10	70	14	57	32	1	1	64	1.10
66509815--66509958	48	3.0	47	69	17	116	31	2	3	61	1.27
66510113--66510188	38	2.0	38	100	0	152	42	7	23	26	1.81
66517089--66517338	107	2.4	106	80	5	256	27	17	29	26	1.98
66533367--66533406	15	2.7	15	92	0	62	17	15	10	57	1.64
66542103--66542132	15	2.0	15	100	0	60	40	6	26	26	1.81
66545513--66545553	16	2.7	15	85	10	57	41	7	0	51	1.30
66557239--66557283	23	2.0	23	82	8	56	37	8	13	40	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66557946--66558020	27	2.8	26	78	8	78	25	25	12	37	1.90
66560787--66560960	48	3.7	48	83	11	193	27	17	31	24	1.97
66564858--66564977	60	2.0	60	95	0	213	26	13	25	34	1.93
66567515--66567574	27	2.3	27	85	2	77	21	23	20	35	1.96
66571765--66571817	23	2.3	23	100	0	106	33	3	24	37	1.74
66576068--66576112	20	2.3	20	88	3	65	28	17	26	26	1.98
66576202--66576254	28	1.9	27	88	3	79	28	20	26	24	1.99
66577928--66577975	18	2.7	18	90	6	71	27	29	20	22	1.99
66584194--66584318	47	2.7	45	82	13	146	28	20	29	22	1.98
66584239--66584459	49	4.6	47	72	11	146	26	17	30	25	1.97
66584191--66584415	94	2.4	94	82	5	258	27	18	30	24	1.98
66586664--66586822	35	4.5	35	80	0	183	30	8	18	42	1.81
66588098--66588126	14	2.1	14	100	0	58	6	0	41	51	1.28
66600098--66600132	17	1.9	19	88	11	56	42	8	0	48	1.33
66600308--66600342	17	2.1	17	94	0	61	34	8	0	57	1.29
66600335--66600390	19	2.8	19	75	19	53	33	1	5	58	1.31
66604081--66604144	28	2.2	30	83	5	78	65	1	1	31	1.11
66604070--66604154	9	9.3	9	71	16	59	65	2	1	30	1.12
66604195--66604263	31	2.2	31	82	10	79	63	1	5	28	1.26
66604490--66604532	19	2.2	20	91	8	70	23	4	0	72	1.04
66604500--66604558	9	6.6	9	75	14	59	23	3	1	71	1.11
66604522--66604588	26	2.5	26	80	9	64	35	1	1	61	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66608510--66608732	110	2.0	110	99	0	437	42	20	6	30	1.76
66610990--66611544	277	2.0	277	100	0	1110	32	16	9	41	1.80
66611980--66612017	18	2.1	18	90	0	58	50	2	34	13	1.55
66614497--66614609	6	18.8	6	77	10	61	26	35	2	35	1.71
66614540--66614580	12	3.4	12	93	0	73	26	46	7	19	1.76
66614536--66614597	24	2.6	24	78	0	70	27	40	4	27	1.76
66614587--66614665	6	13.2	6	72	15	56	21	32	0	45	1.52
66627231--66627314	26	3.2	26	96	0	150	36	25	4	33	1.77
66633044--66633203	26	6.2	26	98	1	304	35	23	7	33	1.83
66634051--66634109	30	2.0	30	90	6	93	20	44	0	35	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279