Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  134  of  279  ( 33431 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43208518--43208613
39
2.5
39
80
6
108
20
23
28
27
1.99
43224032--43224068
12
3.0
12
92
4
56
64
8
2
24
1.34
43237136--43237182
23
2.0
23
84
8
60
42
8
4
44
1.54
43237230--43237280
18
2.6
19
75
15
50
70
11
13
3
1.29
43238929--43239080
37
3.9
37
81
13
173
26
21
15
36
1.94
43238997--43239265
46
5.6
46
84
10
340
28
22
14
34
1.93
43239040--43239259
52
4.3
52
85
8
299
27
22
14
35
1.93
43238997--43239265
98
2.7
98
93
0
457
28
22
14
34
1.93
43247536--43247564
15
1.9
15
100
0
58
55
3
13
27
1.55
43248095--43248134
21
1.9
21
84
0
53
55
2
0
42
1.13
43248986--43249067
40
2.1
39
93
2
137
20
30
24
23
1.98
43249106--43249213
45
2.5
43
83
4
119
15
9
52
22
1.71
43249127--43249213
45
1.9
45
88
0
129
14
8
52
24
1.68
43250748--43250795
15
3.4
13
76
18
51
56
0
2
41
1.11
43250754--43250795
15
2.8
15
79
13
59
57
0
2
40
1.12
43257040--43257073
17
2.0
17
88
0
50
0
11
2
85
0.71
43257773--43257807
18
1.9
18
88
0
52
45
0
5
48
1.26
43262248--43262276
9
3.2
9
100
0
58
31
58
0
10
1.31
43265500--43265545
3
15.3
3
100
0
92
67
0
32
0
0.91
43267997--43268068
5
14.8
5
74
21
64
38
0
4
56
1.18
43268026--43268068
19
2.3
19
92
8
70
41
0
0
58
0.98
43268078--43268111
17
2.0
17
94
0
59
79
0
17
2
0.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43268078--43268111
9
3.9
9
84
7
52
79
0
17
2
0.86
43272963--43273020
30
1.9
30
89
0
89
41
3
24
31
1.71
43273232--43273263
13
2.5
13
94
0
55
31
0
12
56
1.37
43273358--43273542
50
3.7
50
99
0
361
26
23
32
16
1.96
43275622--43275685
23
2.6
24
76
14
60
25
26
17
31
1.97
43275630--43275676
23
2.0
23
88
8
69
21
29
19
29
1.97
43275669--43275731
25
2.6
25
74
2
65
23
22
22
31
1.98
43285839--43285878
21
2.0
20
85
9
55
35
25
15
25
1.94
43289813--43289839
14
1.9
14
100
0
54
29
0
18
51
1.46
43291395--43291443
23
2.2
22
82
10
55
61
2
8
28
1.36
43291822--43291865
17
2.7
16
82
6
52
47
0
2
50
1.13
43291952--43292008
23
2.5
23
81
10
73
49
0
8
42
1.34
43309269--43309299
16
1.9
16
93
0
53
41
0
3
54
1.16
43309379--43309409
12
2.6
12
94
0
53
74
0
25
0
0.82
43334687--43334736
25
2.0
25
96
0
91
42
12
8
38
1.71
43335728--43335799
30
2.3
30
77
13
74
62
8
5
23
1.45
43335689--43335783
41
2.3
43
83
3
122
61
8
4
26
1.43
43335689--43335784
43
2.3
43
80
8
108
61
8
4
26
1.43
43339215--43339241
6
4.5
6
100
0
54
33
0
66
0
0.92
43346363--43346531
90
1.9
89
90
1
266
30
30
7
32
1.84
43351684--43351717
16
2.1
16
88
0
50
26
0
2
70
1.01
43352231--43352290
27
2.2
28
77
19
65
15
5
8
71
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43363289--43363464
46
3.8
46
77
10
196
22
19
28
30
1.98
43363286--43363456
93
1.8
93
91
0
279
22
19
28
29
1.98
43363612--43363661
24
2.1
24
100
0
100
36
8
26
30
1.85
43365845--43365880
17
2.2
16
90
5
54
11
5
13
69
1.34
43373246--43373272
12
2.2
12
100
0
54
37
48
14
0
1.45
43375631--43375772
74
1.9
74
94
2
250
54
10
12
22
1.68
43378831--43378887
29
2.0
29
96
0
105
42
10
14
33
1.79
43390871--43390901
13
2.4
13
100
0
62
41
9
16
32
1.80
43391703--43391756
14
3.9
13
83
9
63
42
0
12
44
1.43
43391961--43391989
14
2.0
15
93
6
51
75
0
0
24
0.80
43393988--43394028
21
2.0
21
100
0
82
36
14
19
29
1.92
43403627--43403653
11
2.5
11
100
0
54
22
7
18
51
1.70
43414171--43414216
21
2.2
21
88
0
65
39
26
0
34
1.57
43414375--43414413
20
2.0
20
85
5
53
30
2
2
64
1.21
43414389--43414449
26
2.5
23
82
15
70
26
1
1
70
1.06
43414366--43414450
33
2.5
35
72
22
83
29
1
1
68
1.05
43419756--43420121
126
2.9
126
88
1
520
29
16
15
38
1.90
43422174--43422684
255
2.0
255
100
0
1022
33
18
8
40
1.80
43430094--43430157
29
2.2
28
88
2
92
46
0
0
53
1.00
43444304--43444460
18
8.3
18
66
13
73
36
14
12
35
1.85
43444383--43444496
54
2.1
54
82
6
133
39
12
12
35
1.80
43444659--43444683
6
4.2
6
100
0
50
52
16
16
16
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43444667--43444761
39
2.4
39
92
0
163
43
20
16
20
1.88
43444745--43444779
6
5.8
6
100
0
70
48
17
17
17
1.81
43448497--43448525
13
2.1
14
93
6
51
0
17
0
82
0.66
43450345--43450396
24
2.2
24
92
0
86
30
1
11
55
1.46
43461308--43461333
2
13.0
2
100
0
52
50
0
0
50
1.00
43473462--43473532
24
2.8
24
77
10
72
38
1
0
60
1.06
43473516--43473557
22
1.9
22
85
9
59
23
4
7
64
1.38
43473594--43473647
29
1.9
29
85
7
76
57
3
0
38
1.17
43475271--43475327
24
2.2
27
78
9
66
70
1
0
28
0.98
43478687--43478728
15
2.8
15
82
13
50
33
0
2
64
1.07
43485845--43485906
30
2.1
30
96
0
115
30
16
19
33
1.94
43489127--43489190
26
2.4
26
82
7
67
29
6
3
60
1.36
43489148--43489200
26
2.0
27
89
10
83
28
3
3
64
1.28
43490050--43490091
14
3.1
14
83
13
52
45
28
0
26
1.54
43497403--43497446
6
7.3
6
89
0
61
6
0
56
36
1.26
43497992--43498033
18
2.3
18
80
11
50
57
0
4
38
1.20
43498672--43498719
16
3.1
16
88
5
64
52
4
0
43
1.20
43498673--43498721
14
3.4
14
86
13
73
51
4
0
44
1.20
43498747--43498794
12
3.8
12
77
17
53
50
0
2
47
1.12
43501104--43501399
148
2.0
148
97
0
556
38
23
9
28
1.87
43504106--43504157
26
2.0
26
84
3
68
53
0
1
44
1.11
43509112--43510102
90
11.0
90
99
0
1957
19
16
13
50
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43517753--43517843
45
2.0
45
97
0
173
21
31
16
29
1.95
43518384--43518413
7
4.3
7
100
0
60
26
33
0
40
1.57
43525372--43525397
11
2.4
11
100
0
52
26
0
7
65
1.20
43537697--43538077
75
5.1
75
97
0
694
27
15
25
31
1.96
43538015--43538193
88
2.0
88
89
4
272
28
16
18
36
1.93
43538183--43538353
89
1.9
90
85
3
238
29
18
19
32
1.96
43539348--43539383
18
1.9
19
88
5
56
13
5
2
77
1.05
43539970--43540029
11
5.3
11
95
2
84
31
0
3
65
1.09
43539975--43540029
3
19.0
3
88
7
87
32
0
1
65
1.03
43540603--43540698
48
2.0
48
81
2
111
30
10
9
50
1.68
43540871--43540916
17
2.6
17
86
10
58
30
0
10
58
1.32
43545096--43545134
18
2.2
18
85
0
51
28
5
0
66
1.12
43546012--43546036
9
2.8
9
100
0
50
8
8
0
84
0.79
43546052--43546125
37
2.0
37
85
12
100
21
6
4
67
1.31
43546115--43546203
22
4.0
21
77
12
72
41
1
2
55
1.20
43546128--43546203
22
3.5
22
78
10
84
42
1
2
53
1.23
43546467--43546513
18
2.8
18
75
15
55
59
0
0
40
0.97
43546689--43546751
26
2.4
27
83
2
74
50
3
1
44
1.27
43546847--43546921
23
3.4
22
75
14
66
37
1
1
60
1.14
43546878--43546921
21
2.1
21
84
16
56
36
2
0
61
1.09
43547023--43547065
18
2.3
18
88
4
59
58
2
0
39
1.11
43550060--43550182
30
4.1
30
88
0
174
22
21
27
28
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43558857--43558885
2
15.0
2
92
7
51
0
48
0
51
1.00
43565558--43565648
41
2.2
41
96
2
164
28
12
13
46
1.79
43572491--43572594
18
5.8
18
74
17
74
46
10
12
30
1.76
43572497--43572562
16
3.9
16
78
13
53
48
10
13
27
1.75
43587135--43587251
30
3.9
29
77
11
94
44
3
21
30
1.69
43587150--43587251
30
3.4
30
83
2
125
44
3
21
30
1.70
43587249--43587287
18
2.1
19
90
4
62
17
0
2
79
0.84
43587247--43587276
15
1.9
16
93
6
53
20
0
0
80
0.72
43587249--43587287
19
2.1
19
90
0
60
17
0
2
79
0.84
43592353--43592392
16
2.3
19
87
12
59
10
2
17
70
1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279