genome.fa.s8.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  132  of  279  ( 33431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42406758--42406800	5	8.6	5	100	0	86	41	0	0	58	0.98
42410345--42410539	43	4.5	43	88	1	284	32	31	24	11	1.91
42412515--42412558	19	2.2	20	88	8	72	59	9	15	15	1.61
42415686--42415730	22	2.0	23	95	4	83	42	22	17	17	1.89
42415933--42416019	28	3.1	29	85	5	124	44	27	8	19	1.78
42416169--42416212	16	2.7	15	82	10	52	40	20	0	38	1.53
42424374--42424422	21	2.3	21	86	6	64	61	4	0	34	1.15
42424766--42424831	26	2.7	24	71	19	64	27	3	13	56	1.52
42428490--42428559	34	2.1	34	100	0	140	58	11	5	24	1.54
42432115--42432171	21	2.8	20	75	15	62	31	0	3	64	1.10
42438581--42438653	28	2.9	24	77	15	92	12	24	4	58	1.51
42443180--42443216	19	1.9	19	100	0	74	48	8	10	32	1.67
42446817--42446883	6	11.2	6	95	0	98	28	40	0	31	1.57
42447286--42447312	12	2.2	12	100	0	54	11	29	0	59	1.32
42451191--42451231	21	2.0	21	90	0	64	19	29	21	29	1.98
42455971--42456011	21	2.0	21	90	0	64	19	29	21	29	1.98
42465649--42465702	2	27.0	2	96	0	99	0	48	0	51	1.00
42467083--42467144	10	6.3	10	73	17	58	40	0	1	58	1.08
42467082--42467143	19	3.1	21	80	15	60	41	0	1	56	1.09
42467085--42467181	28	3.4	27	80	12	97	40	0	2	57	1.10
42467112--42467197	38	2.2	40	85	8	113	43	0	2	54	1.13
42468458--42468511	18	2.7	19	78	16	65	62	0	1	35	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42470732--42470764	15	2.1	16	88	5	50	12	9	3	75	1.14
42472529--42472574	10	4.6	10	84	10	51	23	6	2	67	1.25
42476315--42476499	25	7.4	25	91	4	293	22	25	19	32	1.97
42476478--42476544	22	3.1	21	79	14	82	14	25	20	38	1.91
42490095--42490299	51	4.0	51	90	1	313	33	13	21	31	1.92
42495588--42495648	30	2.0	30	83	0	77	31	22	8	37	1.84
42497259--42497300	10	4.1	10	84	3	57	21	4	2	71	1.16
42497259--42497298	20	2.0	20	95	0	71	20	5	2	72	1.15
42502851--42502934	28	3.0	28	91	1	132	19	3	30	46	1.66
42502855--42502948	28	3.6	24	78	18	91	15	4	34	45	1.66
42503139--42503225	21	4.0	23	75	13	85	14	22	26	35	1.94
42506601--42506645	19	2.4	19	96	0	81	24	31	17	26	1.97
42513786--42513846	23	2.7	23	86	0	77	59	6	1	32	1.33
42516499--42516534	2	18.0	2	100	0	72	0	50	0	50	1.00
42517041--42517074	17	2.0	17	94	0	59	44	50	0	5	1.26
42521680--42521713	17	2.0	17	94	0	59	44	50	0	5	1.26
42530756--42531955	237	4.9	234	77	11	954	37	9	7	46	1.64
42531189--42531222	16	2.1	17	88	5	52	47	0	8	44	1.34
42530861--42531955	489	2.2	480	80	7	1190	38	8	7	45	1.63
42533195--42533326	66	2.0	66	96	0	246	35	11	14	38	1.82
42536683--42536719	16	2.2	18	85	9	51	62	2	18	16	1.45
42543810--42543848	20	2.0	20	89	0	60	12	10	17	58	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42546167--42546201	16	2.2	16	100	0	70	37	5	11	45	1.64
42546219--42546272	27	2.0	27	100	0	108	33	22	11	33	1.89
42546628--42546949	10	34.7	9	68	15	133	34	1	4	59	1.26
42546642--42546692	26	2.0	26	84	0	66	35	1	1	60	1.19
42546700--42546812	9	13.0	8	71	21	77	34	0	3	61	1.20
42546743--42546793	19	2.7	20	82	14	63	27	0	3	68	1.07
42546853--42546958	18	5.8	18	73	16	67	34	0	5	59	1.21
42546852--42546918	19	3.5	19	82	9	66	34	0	5	59	1.22
42546845--42546949	29	3.8	28	78	14	85	33	0	4	61	1.17
42546699--42546927	18	12.5	19	70	16	80	34	1	5	59	1.28
42547380--42547433	9	6.2	9	77	16	51	33	5	11	50	1.61
42547382--42547412	10	3.2	10	90	9	55	29	6	9	54	1.57
42547387--42547433	25	1.9	24	91	4	76	31	4	10	53	1.55
42551587--42551613	2	13.5	2	100	0	54	0	48	0	51	1.00
42565087--42565115	2	14.5	2	100	0	58	0	51	0	48	1.00
42568958--42569013	28	2.0	28	100	0	112	42	7	28	21	1.79
42597062--42597156	44	2.2	44	88	1	147	58	6	1	33	1.30
42614718--42614811	48	2.0	48	83	8	120	23	12	23	40	1.89
42617234--42617327	48	2.0	48	83	8	120	23	12	23	40	1.89
42618129--42618154	4	6.5	4	100	0	52	23	0	26	50	1.50
42620170--42620209	5	7.8	5	88	5	62	82	0	0	17	0.67
42623098--42623183	20	4.4	20	75	10	88	47	1	1	50	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42623095--42623183	7	13.3	7	74	17	64	48	1	1	49	1.16
42624379--42624435	22	2.6	22	83	8	80	15	22	19	42	1.89
42641323--42641390	30	2.3	30	82	5	75	27	20	5	45	1.74
42643129--42643221	7	14.1	7	77	15	65	46	1	2	50	1.20
42643128--42643219	39	2.4	38	81	15	100	44	1	2	52	1.20
42644411--42644466	22	2.5	22	85	5	78	12	25	19	42	1.86
42650272--42650313	22	1.9	22	95	0	75	52	2	4	40	1.35
42654320--42654448	56	2.3	56	89	0	195	23	26	26	24	2.00
42655742--42655802	19	3.2	19	78	0	68	22	4	31	40	1.75
42660036--42660060	2	12.5	2	100	0	50	52	0	0	48	1.00
42662331--42662370	18	2.2	18	90	4	62	22	25	0	52	1.47
42669389--42669451	30	2.1	30	82	2	74	46	4	4	44	1.45
42671384--42671439	29	2.0	28	86	6	78	51	8	8	30	1.64
42672844--42672880	3	12.7	3	94	5	67	32	0	0	67	0.91
42686340--42686522	46	4.0	46	85	0	231	19	22	14	43	1.87
42686561--42686805	54	4.5	54	100	0	490	30	23	19	26	1.98
42690963--42691034	21	3.2	21	64	21	56	19	23	13	43	1.87
42690904--42691317	46	9.0	46	91	1	578	21	24	15	38	1.92
42720643--42720709	21	3.1	21	81	8	71	38	1	4	55	1.29
42734910--42734979	16	4.4	16	83	0	95	32	1	32	32	1.67
42734958--42735048	45	2.0	44	82	2	110	31	5	27	35	1.80
42735191--42735228	16	2.4	17	82	13	53	52	2	0	44	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42735174--42735460	22	14.0	21	65	21	92	53	3	1	41	1.25
42735274--42735314	13	3.2	12	80	12	55	58	0	0	41	0.98
42735302--42735337	18	2.0	18	100	0	72	66	0	0	33	0.92
42735425--42735459	18	2.0	17	94	5	61	57	0	0	42	0.99
42735229--42735520	59	4.8	60	69	15	192	52	4	1	41	1.33
42735229--42735536	121	2.6	120	94	1	528	52	4	1	40	1.32
42737021--42737050	13	2.3	13	94	0	51	30	13	6	50	1.67
42739250--42739276	14	1.9	14	100	0	54	22	18	14	44	1.86
42743714--42743750	19	1.9	19	88	0	56	56	27	0	16	1.40
42746466--42746521	15	3.7	15	78	7	60	60	3	1	33	1.24
42748816--42748851	18	2.0	18	88	0	54	66	8	0	25	1.19
42757880--42758048	89	1.9	89	87	2	250	30	18	12	38	1.88
42760093--42760285	47	4.0	48	81	8	196	23	17	29	30	1.97
42760097--42760304	93	2.1	97	80	8	228	25	16	28	28	1.97
42762261--42762293	14	2.5	14	90	9	52	63	3	0	33	1.10
42762254--42762305	10	4.6	11	80	15	54	57	1	0	40	1.10
42768648--42768723	36	2.1	36	100	0	152	43	5	2	48	1.39
42784345--42784393	22	2.2	22	81	3	53	57	6	4	32	1.42
42789613--42789673	32	1.9	32	83	6	79	44	22	21	11	1.84
42789653--42789713	21	2.9	21	64	9	52	47	19	21	11	1.81
42792977--42793002	2	13.0	2	100	0	52	0	50	0	50	1.00
42796613--42796677	34	1.9	34	83	0	85	32	4	7	55	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42803718--42803759	22	2.0	22	90	4	68	61	0	0	38	0.96
42807205--42807258	20	2.6	21	82	11	67	35	0	7	57	1.27
42807248--42807275	11	2.5	11	100	0	56	28	0	0	71	0.86
42808993--42809067	25	3.2	25	63	33	65	28	4	25	42	1.73
42808982--42809074	46	2.0	46	100	0	186	27	4	25	41	1.74
42819150--42819182	17	1.9	17	93	0	57	33	0	0	66	0.92
42822052--42822087	18	1.9	19	88	5	56	55	5	0	38	1.23
42822052--42822090	19	2.1	19	85	9	53	53	5	0	41	1.23
42823394--42823428	17	2.1	16	89	10	52	51	0	0	48	1.00
42823545--42823599	20	2.7	19	80	8	56	38	0	0	61	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279