genome.fa.s8.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  157  of  279  ( 33431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51503325--51503408	28	3.0	28	91	1	132	19	3	30	46	1.66
51503329--51503422	28	3.6	24	78	18	91	15	4	34	45	1.66
51503612--51503719	21	5.1	21	86	5	128	14	23	25	36	1.93
51519211--51519242	16	2.1	15	94	5	55	37	0	9	53	1.34
51519470--51519518	22	2.2	22	82	7	55	40	8	2	48	1.44
51533192--51533216	13	1.9	13	100	0	50	88	0	0	12	0.53
51533814--51534045	119	2.0	118	83	4	297	40	11	9	39	1.73
51534141--51534177	11	2.9	13	80	19	51	51	2	0	45	1.15
51538770--51538930	54	2.9	53	83	5	187	25	26	15	32	1.96
51542859--51542995	71	2.0	68	84	9	179	40	3	4	51	1.39
51544829--51544862	16	2.2	15	89	5	50	82	0	14	2	0.79
51560862--51560901	17	2.4	17	83	4	55	60	0	0	40	0.97
51561215--51561257	9	4.8	9	94	0	59	65	4	2	27	1.25
51561191--51561248	3	18.7	3	79	13	64	63	1	0	34	1.04
51561418--51561548	3	41.3	3	75	13	95	58	3	5	32	1.38
51561472--51561548	20	3.7	21	72	24	58	58	5	5	31	1.42
51561573--51561605	16	2.1	16	88	5	50	66	0	0	33	0.92
51563484--51564008	72	7.1	72	83	5	550	33	19	16	31	1.93
51563498--51564008	149	3.5	144	84	7	593	33	19	16	31	1.94
51563500--51563988	221	2.2	220	88	1	701	32	20	16	31	1.94
51576340--51576372	16	2.1	16	88	5	50	66	0	0	33	0.92
51583264--51583335	36	2.0	37	88	2	110	13	12	36	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51583267--51583354	37	2.4	37	78	3	88	15	12	35	36	1.86
51597392--51597459	24	3.0	25	83	10	67	33	2	0	63	1.10
51597433--51597467	17	2.1	16	89	5	52	37	0	0	62	0.95
51606954--51607128	96	1.8	96	87	2	262	40	17	32	10	1.83
51608827--51609001	96	1.8	96	88	0	269	40	17	32	10	1.83
51616256--51616286	15	2.1	15	100	0	62	12	12	54	19	1.70
51616271--51616345	27	2.8	27	91	0	114	28	18	37	16	1.92
51619482--51619631	64	2.4	64	94	1	266	39	4	10	45	1.60
51620016--51620095	33	2.4	33	87	0	106	33	17	31	17	1.93
51620106--51620214	33	3.3	32	76	5	85	22	11	41	25	1.86
51620136--51620227	32	2.8	32	86	1	112	21	13	40	25	1.89
51621778--51621884	33	3.3	33	77	1	126	21	43	14	19	1.87
51622302--51622458	64	2.5	64	87	3	210	46	9	4	39	1.57
51622872--51622964	46	2.0	46	97	0	177	29	21	26	22	1.99
51623872--51623917	22	2.1	22	95	0	83	8	15	36	39	1.78
51625965--51626082	2	60.5	2	74	11	84	43	3	52	0	1.23
51636025--51636075	17	3.1	16	78	18	59	11	3	3	80	0.98
51636429--51636469	13	3.1	14	82	10	50	73	4	0	21	1.02
51640070--51640130	11	5.5	11	72	2	50	72	3	21	3	1.14
51644199--51644387	62	3.2	59	75	13	167	51	3	3	41	1.35
51644199--51644395	56	3.4	62	76	12	186	50	3	3	43	1.35
51644773--51644812	19	2.1	19	90	0	62	32	0	5	62	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51646606--51646642	9	4.1	9	92	0	65	45	13	10	29	1.77
51651712--51653455	72	23.7	72	75	13	1078	33	21	16	29	1.95
51651712--51653455	147	11.9	144	75	13	1320	33	21	16	29	1.95
51652360--51652538	61	2.8	62	80	8	191	27	26	18	26	1.98
51652703--51652870	86	1.9	87	84	8	223	36	20	16	26	1.93
51652831--51652941	54	2.0	54	84	8	145	37	19	16	26	1.92
51652738--51653007	140	1.9	140	96	0	495	36	20	16	26	1.93
51653179--51653433	61	3.9	62	76	14	210	31	26	17	24	1.97
51653102--51653638	201	2.7	193	80	5	576	34	23	15	26	1.94
51653330--51653576	122	2.0	124	88	3	374	40	22	13	23	1.90
51653455--51653629	71	2.5	70	84	3	210	34	23	13	28	1.93
51654562--51654630	34	2.0	34	97	0	129	23	31	14	30	1.94
51667657--51667699	22	2.0	22	100	0	86	58	4	4	32	1.39
51668098--51668154	16	3.2	17	78	14	53	59	0	36	3	1.14
51669987--51670155	77	2.2	77	89	3	259	47	23	9	19	1.78
51671063--51671140	27	2.9	26	86	7	95	33	21	24	20	1.97
51675083--51675215	48	2.8	48	98	0	257	45	15	12	26	1.82
51675223--51675269	24	2.0	24	95	0	85	53	14	4	27	1.60
51675364--51675417	17	3.2	17	70	15	58	57	24	1	16	1.49
51675355--51675445	23	4.0	23	68	22	57	57	23	3	16	1.54
51676767--51676818	10	5.3	10	77	11	54	34	0	3	61	1.14
51685990--51686410	26	16.2	26	92	0	707	34	7	23	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51685990--51686410	52	8.1	52	99	0	815	34	7	23	34	1.83
51693503--51693611	26	4.2	26	92	0	191	33	8	23	34	1.85
51693853--51693968	57	2.0	57	96	0	214	24	7	23	44	1.79
51695726--51695846	60	2.0	60	96	0	224	19	18	29	32	1.96
51707797--51707841	18	2.4	19	85	3	56	57	2	2	37	1.23
51708144--51708239	9	10.4	9	72	20	74	32	2	1	64	1.12
51708433--51708604	91	1.9	91	82	3	220	43	4	11	41	1.61
51711340--51711402	26	2.4	27	81	7	85	19	20	20	39	1.92
51715867--51716038	93	1.8	93	93	0	299	29	27	20	22	1.98
51715860--51716035	46	3.8	46	79	12	207	30	27	19	22	1.98
51725483--51725534	27	2.0	26	84	3	68	34	21	26	17	1.95
51742625--51742673	24	2.0	24	100	0	98	30	16	12	40	1.85
51743909--51743941	17	1.9	17	88	11	50	45	3	0	51	1.16
51750460--51750509	18	2.6	19	81	15	59	52	0	0	48	1.00
51756847--51756900	27	2.0	26	82	10	65	25	14	12	46	1.81
51760451--51760505	21	2.6	21	77	5	58	40	5	40	14	1.69
51760571--51760599	15	1.9	15	100	0	58	34	6	44	13	1.71
51760625--51760671	9	5.2	9	81	0	58	51	0	44	4	1.21
51760622--51760672	24	2.1	24	88	0	75	49	0	47	3	1.20
51765573--51765628	29	1.9	29	100	0	112	48	16	10	25	1.78
51772660--51772699	20	2.0	20	85	0	53	40	7	2	50	1.44
51775521--51775569	24	2.0	24	100	0	98	48	8	0	42	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51777026--51777065	2	20.0	2	100	0	80	0	50	0	50	1.00
51779740--51779859	60	2.0	60	100	0	240	35	8	11	45	1.71
51790486--51790510	13	1.9	13	100	0	50	24	8	16	52	1.70
51795199--51795238	20	2.0	20	95	0	71	12	40	12	35	1.81
51801181--51801216	13	2.8	14	84	16	51	27	25	0	47	1.52
51801168--51801208	18	2.2	19	87	12	59	29	24	0	46	1.53
51801848--51801894	15	3.1	15	78	0	58	46	12	4	36	1.62
51803154--51803190	9	4.4	8	90	10	56	21	5	0	72	1.04
51803154--51803190	4	8.8	4	88	11	56	21	5	0	72	1.04
51803157--51803190	17	1.9	18	94	5	61	23	5	0	70	1.09
51803144--51803190	13	3.6	13	91	5	69	19	8	0	72	1.10
51803143--51803194	9	5.8	9	78	15	54	19	7	0	73	1.07
51806314--51806539	21	11.0	21	74	7	196	46	16	19	16	1.84
51806314--51806539	61	3.7	61	85	2	292	46	16	19	16	1.84
51806314--51806542	122	1.9	124	87	3	347	47	16	19	17	1.83
51808064--51808118	20	2.8	20	88	0	83	30	1	3	63	1.22
51808058--51808124	3	22.7	3	79	8	75	29	1	2	65	1.16
51810552--51810724	93	1.9	93	92	2	294	28	30	20	20	1.98
51810545--51810714	46	3.7	45	79	10	200	29	30	20	20	1.97
51810553--51810739	46	4.0	44	68	19	103	29	29	19	21	1.98
51815039--51815142	27	3.9	27	67	14	72	53	4	3	37	1.40
51820608--51820641	16	2.1	16	94	0	59	41	26	8	23	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51825590--51825633	21	2.0	22	83	12	56	31	6	4	56	1.46
51827949--51828064	51	2.2	53	84	4	146	37	23	21	17	1.93
51828577--51828612	15	2.5	15	90	4	56	0	33	0	66	0.92
51831371--51831563	47	4.0	49	81	9	200	30	29	17	23	1.97
51834358--51834396	12	3.2	12	81	3	51	23	20	0	56	1.42
51835916--51835968	23	2.3	23	90	0	88	32	28	20	18	1.97
51837316--51837342	14	1.9	14	100	0	54	3	14	0	81	0.82
51837364--51837402	9	4.2	9	83	6	51	10	10	2	76	1.10
51848303--51848432	61	2.1	61	85	2	181	56	8	1	33	1.39
51859519--51859559	21	2.0	21	81	18	50	31	19	26	21	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279