genome.fa.s8.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  141  of  279  ( 33431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45683220--45683271	24	2.2	24	82	6	61	5	21	28	44	1.75
45685768--45685792	12	2.1	12	100	0	50	40	0	44	16	1.47
45687322--45687355	3	11.3	3	93	0	59	0	29	35	35	1.58
45701308--45701387	17	4.6	18	71	11	69	53	1	0	45	1.08
45701314--45701396	26	3.2	25	79	14	89	55	1	0	43	1.07
45701308--45701396	35	2.6	34	78	3	106	53	1	0	44	1.07
45704794--45704991	99	2.0	99	100	0	396	20	34	14	31	1.92
45704807--45705015	99	2.1	98	91	3	330	19	35	13	31	1.91
45708185--45708265	31	2.5	32	94	4	137	65	2	14	17	1.38
45710157--45710213	19	3.1	19	85	7	73	56	5	0	38	1.22
45710170--45710242	18	4.1	18	76	13	71	50	2	0	46	1.15
45720352--45720388	19	1.9	19	94	0	65	51	2	0	45	1.15
45721878--45721946	27	2.5	28	81	9	79	43	5	0	50	1.26
45728558--45728599	19	2.3	19	87	4	59	76	7	9	7	1.17
45728558--45728604	19	2.4	19	82	3	58	76	6	8	8	1.15
45728764--45728810	22	2.1	22	84	7	60	70	0	29	0	0.88
45729381--45729442	30	2.3	26	77	22	65	66	1	4	27	1.21
45729393--45729969	154	4.1	138	77	14	530	55	6	8	29	1.54
45729529--45730026	146	3.3	146	76	15	472	57	6	8	28	1.51
45729440--45729698	132	1.9	132	81	6	308	55	6	8	28	1.56
45729530--45730026	154	3.3	145	86	8	714	57	6	8	28	1.52
45729977--45730085	30	3.6	30	77	3	130	62	2	6	27	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45729664--45730363	342	2.0	353	86	6	1005	56	6	7	28	1.52
45730173--45730626	147	3.1	145	89	2	680	56	7	7	28	1.53
45732321--45732425	50	2.1	50	98	1	203	40	21	7	30	1.81
45737054--45737303	46	5.5	44	83	9	186	23	29	20	26	1.99
45737097--45737354	92	2.8	89	81	10	279	22	30	20	26	1.98
45737097--45737354	46	5.6	44	81	7	241	22	30	20	26	1.98
45742675--45742732	29	2.0	29	100	0	116	20	13	20	44	1.85
45743414--45743499	16	5.3	15	70	21	50	2	31	1	65	1.13
45743437--45743499	25	2.5	25	82	5	74	3	33	0	63	1.10
45743623--45743667	19	2.4	19	88	7	65	4	11	8	75	1.17
45744478--45744532	28	2.0	28	82	7	67	45	23	0	30	1.53
45747114--45747156	21	2.0	21	100	0	86	27	46	4	20	1.71
45748360--45748422	27	2.3	27	97	0	117	19	0	65	15	1.28
45752883--45752922	21	1.9	21	100	0	80	45	5	20	30	1.72
45752884--45752929	21	2.2	21	88	3	67	45	8	15	30	1.76
45753210--45753262	15	3.6	14	77	10	52	64	0	3	32	1.12
45754175--45754214	19	2.0	20	85	4	55	35	0	10	55	1.34
45755851--45755923	35	2.1	35	100	0	146	31	6	17	43	1.75
45757670--45757725	20	2.6	22	75	8	62	42	21	19	16	1.89
45758876--45758932	23	2.5	23	83	13	73	36	12	5	45	1.64
45759172--45759248	3	26.3	3	80	10	88	62	3	0	33	1.14
45763834--45763975	24	5.9	24	71	4	117	23	14	30	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45767157--45767358	40	5.0	40	82	3	172	37	23	21	18	1.94
45767157--45767358	81	2.5	80	82	3	226	37	23	21	18	1.94
45767502--45767541	14	2.9	14	88	0	53	30	0	22	47	1.52
45768341--45768399	26	2.2	25	85	8	73	32	0	18	49	1.48
45768399--45768430	15	2.1	15	94	0	55	59	0	9	31	1.29
45768402--45768469	24	2.8	24	76	10	75	57	0	4	38	1.19
45769990--45770032	18	2.4	17	84	7	59	23	6	27	41	1.80
45773000--45773129	43	3.0	44	88	4	192	29	18	24	27	1.98
45775136--45775312	50	3.5	50	84	2	230	36	15	20	27	1.93
45775290--45775491	31	6.5	31	91	0	314	28	18	26	26	1.98
45775497--45775525	7	4.1	7	100	0	58	44	13	27	13	1.82
45775529--45775654	47	2.7	48	86	2	166	29	15	25	29	1.96
45781842--45781874	6	5.5	6	100	0	66	30	36	18	15	1.91
45782266--45782368	41	2.5	42	78	15	106	48	1	0	48	1.19
45791490--45791545	20	2.8	20	91	2	87	37	7	0	55	1.27
45791512--45791555	20	2.2	20	83	0	52	34	6	2	56	1.38
45806718--45806803	31	2.9	29	79	17	88	60	2	0	37	1.10
45806741--45806806	28	2.4	26	79	18	71	59	1	0	39	1.07
45821665--45822252	120	4.9	120	98	0	1122	43	2	5	48	1.39
45821961--45821995	18	2.0	17	88	5	52	45	0	0	54	0.99
45822081--45822115	18	2.0	17	88	5	52	45	0	0	54	0.99
45822201--45822235	18	2.0	17	88	5	52	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45822400--45822490	45	2.0	45	85	2	121	37	28	6	27	1.82
45822471--45822539	16	4.2	16	92	3	120	36	37	1	24	1.65
45822471--45822539	33	2.1	32	94	2	120	36	37	1	24	1.65
45842039--45842152	51	2.2	51	95	0	201	33	14	23	28	1.94
45877171--45877233	30	2.1	30	88	5	92	46	12	3	38	1.58
45877326--45877365	21	2.0	20	85	5	53	27	2	12	57	1.48
45882598--45882622	10	2.5	10	100	0	50	28	0	0	72	0.86
45884280--45884416	40	3.4	40	87	0	148	32	10	20	36	1.87
45891386--45891443	29	2.0	29	100	0	116	31	17	17	34	1.93
45891390--45891451	29	2.1	29	90	0	97	32	20	14	32	1.93
45894637--45894667	14	2.2	14	94	0	53	19	6	12	61	1.53
45894698--45894760	30	2.1	30	96	0	117	30	3	9	57	1.46
45894884--45894917	12	2.8	12	90	0	50	67	0	0	32	0.91
45895786--45895810	12	2.1	12	100	0	50	24	20	8	48	1.76
45900869--45900904	13	2.8	14	84	16	51	27	25	0	47	1.52
45900856--45900896	18	2.2	19	87	12	59	29	24	0	46	1.53
45901001--45901058	23	2.5	23	91	0	98	44	41	5	8	1.57
45902387--45902450	32	2.0	32	85	8	87	46	7	0	45	1.32
45902964--45902992	13	2.1	14	93	6	51	44	3	0	51	1.18
45906528--45906614	42	2.1	42	97	0	165	50	13	6	28	1.67
45917634--45917682	24	2.0	25	88	4	73	46	2	0	51	1.12
45917929--45917953	3	8.3	3	100	0	50	32	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45934546--45934680	67	2.0	67	89	0	207	40	12	22	25	1.89
45936414--45936445	16	2.0	16	100	0	64	50	12	0	37	1.41
45947370--45947478	54	2.0	54	94	0	191	37	5	22	34	1.77
45955035--45955152	24	4.8	25	73	5	98	33	18	27	20	1.96
45955035--45955201	24	6.9	24	71	7	88	33	18	28	19	1.96
45955182--45955238	26	2.2	26	81	3	71	35	24	24	15	1.95
45955089--45955253	24	6.7	26	71	8	78	34	20	27	18	1.95
45956962--45957006	17	2.7	16	80	10	54	66	2	0	31	1.04
45956934--45957483	273	2.0	273	97	0	1046	36	16	4	42	1.68
45958647--45958709	30	2.1	30	96	0	117	57	12	3	26	1.51
45960434--45960468	16	2.2	16	89	0	52	28	0	2	68	1.04
45975268--45975293	3	8.7	3	100	0	52	34	0	0	65	0.93
45976359--45976401	21	2.1	20	91	4	68	4	4	58	30	1.39
46001069--46001100	13	2.4	14	85	15	50	65	0	6	28	1.16
46002410--46002482	38	1.9	38	100	0	146	60	2	8	28	1.40
46003373--46003410	6	6.3	6	100	0	76	0	34	15	50	1.45
46006771--46006847	36	2.2	36	97	2	147	27	14	22	36	1.92
46007593--46007665	38	1.9	38	100	0	146	53	19	2	24	1.58
46008991--46009015	3	8.3	3	100	0	50	32	32	0	36	1.58
46018185--46018218	17	2.0	17	88	0	50	47	0	0	52	1.00
46021210--46021244	16	2.3	15	90	5	52	62	2	2	31	1.24
46021359--46021418	23	2.9	20	70	15	59	56	5	6	31	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46021371--46021538	25	6.7	25	74	14	91	58	4	4	32	1.40
46021468--46021533	15	4.3	15	74	14	64	60	1	3	34	1.21
46021428--46021526	27	3.6	27	80	10	112	59	5	3	32	1.34
46021481--46021614	25	5.6	25	70	16	86	55	3	4	35	1.38
46022127--46022182	18	3.4	18	68	27	61	19	7	48	25	1.74
46022094--46022192	30	3.3	30	91	0	162	19	6	48	26	1.72
46033614--46033712	48	2.1	48	88	3	146	24	17	29	29	1.97
46033704--46033738	14	2.5	14	95	0	61	17	14	8	60	1.58
46033718--46034333	149	4.1	149	95	1	1042	29	15	20	34	1.93
46033719--46034296	73	7.8	73	84	3	760	29	14	21	33	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279