Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  125  of  279  ( 33431 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39667671--39667704
15
2.3
15
89
0
50
58
8
14
17
1.61
39669183--39669227
19
2.6
17
83
13
56
64
0
17
17
1.29
39670026--39670345
86
3.7
89
71
10
214
20
22
21
35
1.96
39670095--39670345
86
2.9
87
70
10
217
20
23
19
36
1.95
39678448--39678489
19
2.2
20
82
4
50
50
7
16
26
1.71
39678525--39678566
19
2.2
20
82
4
50
50
7
16
26
1.71
39678448--39678591
77
1.9
78
98
1
281
43
11
18
26
1.83
39681367--39681429
26
2.4
26
86
2
90
39
3
9
47
1.52
39681455--39681586
60
2.2
59
85
6
187
37
17
9
36
1.82
39690426--39690475
19
2.6
19
74
17
50
56
0
4
40
1.18
39697083--39697123
21
2.0
21
90
0
64
19
29
21
29
1.98
39701025--39701069
16
2.8
17
77
12
51
62
2
0
35
1.08
39701379--39701405
13
2.1
13
100
0
54
0
7
7
85
0.75
39701512--39701566
28
2.0
28
88
0
83
32
23
7
36
1.82
39707888--39707976
39
2.3
39
92
0
151
15
23
21
39
1.92
39709622--39709684
28
2.2
28
91
0
99
31
30
6
31
1.83
39721691--39721796
52
2.0
52
92
0
176
36
12
6
44
1.68
39740052--39740090
8
4.8
8
81
6
51
12
7
5
74
1.20
39740051--39740094
17
2.6
17
85
0
61
13
9
4
72
1.24
39740136--39740207
21
3.3
21
81
11
81
44
0
4
51
1.20
39740177--39740245
34
2.1
33
94
5
122
36
1
2
59
1.21
39740243--39740284
21
2.0
21
85
4
57
19
0
4
76
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39740099--39740386
152
1.9
153
87
5
431
36
0
3
59
1.18
39740674--39740729
20
2.8
20
73
13
60
32
0
0
67
0.91
39740979--39741024
21
2.2
21
92
0
74
65
0
0
34
0.93
39740980--39741037
21
2.9
19
80
16
64
60
1
1
36
1.17
39741028--39741098
24
3.0
24
78
17
85
56
2
0
40
1.14
39741130--39741184
16
3.8
15
79
16
53
70
0
0
29
0.87
39741126--39741184
7
8.4
7
81
7
75
69
0
0
30
0.89
39741132--39741184
27
1.9
28
88
3
81
69
0
0
30
0.88
39741132--39741192
27
2.2
27
82
2
68
67
1
0
31
1.01
39741207--39741251
19
2.7
15
76
23
54
37
6
0
55
1.26
39741444--39741511
21
3.1
21
75
6
73
51
1
1
45
1.19
39741444--39741507
22
2.9
22
74
19
62
51
1
1
45
1.20
39741582--39741625
18
2.5
17
78
10
52
75
4
0
20
0.98
39741613--39741718
50
2.1
50
92
1
178
59
3
2
33
1.30
39741630--39741709
22
3.4
22
70
27
65
61
1
2
35
1.18
39741619--39741772
83
1.9
78
80
14
177
56
2
2
38
1.27
39741668--39741764
34
2.8
33
78
9
88
56
2
3
38
1.27
39741798--39741849
14
3.7
14
78
14
54
80
0
7
11
0.89
39742307--39742401
27
3.4
28
72
20
90
47
18
15
17
1.83
39744660--39744767
44
2.4
44
87
3
144
29
23
13
33
1.93
39745644--39745678
9
3.9
9
84
0
52
2
17
0
80
0.84
39745644--39745683
18
2.2
19
90
4
64
2
15
2
80
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39745687--39745759
5
14.6
5
76
20
64
56
4
0
39
1.19
39745688--39745730
19
2.3
19
92
8
70
58
0
0
41
0.98
39745694--39745758
24
2.6
25
80
9
71
58
4
0
36
1.19
39750809--39750916
44
2.4
44
87
3
144
29
23
13
33
1.93
39763188--39763218
13
2.4
13
94
0
53
16
3
0
80
0.83
39763415--39763447
3
11.0
3
100
0
66
66
0
0
33
0.92
39768326--39768366
21
2.0
21
90
0
64
19
29
21
29
1.98
39775105--39775145
16
2.6
16
84
0
55
70
0
4
24
1.06
39778386--39778457
16
4.2
16
70
13
63
63
2
2
30
1.22
39780497--39780556
26
2.4
24
83
5
66
51
6
8
33
1.58
39780702--39780804
21
4.8
22
80
10
106
58
2
3
34
1.31
39780700--39780810
23
4.9
22
80
10
89
58
2
3
35
1.30
39780743--39780812
12
6.1
12
73
25
62
60
2
1
35
1.21
39780759--39780824
34
1.9
35
87
9
100
60
1
0
37
1.06
39780696--39780818
12
10.8
12
66
24
61
57
2
3
36
1.28
39781088--39781117
3
10.0
3
100
0
60
66
0
0
33
0.92
39783644--39783698
21
2.6
21
75
16
51
61
7
0
30
1.23
39793737--39793801
31
2.1
31
91
0
103
44
10
10
33
1.74
39805354--39805412
29
2.1
29
84
9
77
33
20
3
42
1.69
39808199--39808272
9
8.6
9
75
14
59
35
1
1
62
1.12
39814540--39814593
26
2.1
27
82
6
67
24
5
1
68
1.21
39819185--39819232
24
2.0
24
100
0
96
25
33
8
33
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39823246--39823301
29
1.9
29
96
0
103
50
12
8
28
1.70
39824900--39824929
16
1.9
16
93
6
53
26
0
0
73
0.84
39824873--39824916
20
2.1
21
83
4
54
31
0
2
65
1.05
39847224--39847264
18
2.3
18
91
0
64
34
7
26
31
1.84
39848015--39848044
15
2.0
15
93
0
51
10
13
3
73
1.21
39854045--39854074
15
2.0
15
93
0
51
73
3
0
23
0.98
39854534--39855068
264
2.0
265
89
2
817
36
12
11
39
1.79
39858846--39858971
66
1.9
66
91
0
207
28
28
12
30
1.93
39871367--39871406
19
2.2
18
86
4
53
20
12
27
40
1.88
39872674--39872698
12
2.1
12
100
0
50
32
8
16
44
1.76
39873195--39873221
12
2.2
12
100
0
54
37
7
14
40
1.74
39899001--39899030
14
2.1
15
93
6
53
33
6
23
36
1.81
39907143--39907181
21
1.9
21
84
5
53
23
2
20
53
1.57
39921657--39921717
30
2.0
30
96
0
113
42
9
22
24
1.84
39932797--39932825
15
1.9
15
100
0
58
20
13
17
48
1.81
39936571--39936595
3
8.3
3
100
0
50
68
0
0
32
0.90
39936705--39936731
2
13.5
2
100
0
54
48
0
0
51
1.00
39937525--39937562
9
4.1
9
81
18
51
52
0
2
44
1.14
39937520--39937561
19
2.4
17
88
11
59
57
0
2
40
1.12
39937564--39937588
13
1.9
13
100
0
50
76
0
0
24
0.80
39951870--39952032
78
2.1
78
88
2
238
41
13
10
34
1.79
39954416--39954483
28
2.5
28
73
21
72
45
7
16
30
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39954876--39954919
16
2.8
16
78
0
61
47
0
6
45
1.29
39954937--39954973
18
2.2
18
85
9
51
18
5
0
75
0.99
39956044--39956090
19
2.3
22
75
17
57
44
4
10
40
1.59
39956578--39956616
18
2.2
19
90
9
64
74
5
10
10
1.21
39956743--39956776
12
2.8
12
100
0
68
23
26
26
23
2.00
39971455--39971506
26
2.0
26
85
7
70
55
3
0
40
1.18
39973515--39973567
27
2.0
27
85
3
72
13
3
15
67
1.35
39990298--39990525
38
6.0
38
96
0
402
30
28
22
18
1.98
39995943--39995994
26
2.0
26
96
0
95
55
5
26
11
1.58
40013730--40013760
7
4.6
7
96
4
55
38
0
0
61
0.96
40013731--40013779
15
3.4
14
83
8
62
36
0
0
63
0.95
40023111--40023143
14
2.4
14
94
0
57
57
0
3
39
1.14
40023245--40023287
22
2.0
23
86
9
63
74
2
9
13
1.16
40023286--40023318
17
1.9
17
88
11
50
72
9
18
0
1.10
40023735--40023767
17
1.9
17
93
0
57
45
0
21
33
1.52
40024268--40024339
27
2.7
27
84
0
99
23
4
34
37
1.74
40024270--40024348
27
2.9
27
79
11
88
25
3
30
40
1.73
40027869--40027906
16
2.3
17
86
4
51
78
7
0
13
0.94
40028771--40028864
38
2.5
37
78
13
95
37
13
1
47
1.50
40033256--40033293
16
2.3
16
86
13
51
71
2
2
23
1.12
40033244--40033494
9
27.8
9
65
23
75
61
3
2
31
1.27
40033973--40034022
21
2.4
22
83
12
70
36
4
10
50
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40034036--40034142
8
12.4
8
75
19
83
38
1
0
58
1.15
40034046--40034089
17
2.6
18
78
14
56
38
0
2
59
1.10
40034037--40034095
25
2.4
25
86
8
77
38
0
1
59
1.08
40034039--40034142
9
11.9
9
72
18
78
37
1
0
59
1.15
40034702--40034768
33
2.1
32
83
8
82
59
4
4
31
1.37
40040920--40040952
6
5.3
6
96
3
57
66
0
15
18
1.25
40040920--40040958
18
2.1
19
85
4
53
71
0
12
15
1.14
40041805--40041848
21
2.1
21
83
8
54
38
36
4
20
1.73
40041958--40042018
31
1.9
32
86
3
88
45
29
0
24
1.53
40042181--40042430
41
6.1
41
86
3
306
20
20
22
37
1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279