Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  119  of  279  ( 33431 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37760920--37760957
17
2.2
17
100
0
76
50
18
7
23
1.73
37767216--37767290
38
2.0
38
82
10
91
8
22
1
68
1.24
37769906--37770019
21
5.4
21
84
6
124
15
23
14
45
1.84
37769906--37770033
42
3.1
40
83
6
132
14
24
14
46
1.83
37776622--37776698
10
8.0
10
73
5
61
32
1
2
63
1.16
37776630--37776702
28
2.7
29
80
16
77
34
1
4
60
1.24
37779154--37779178
8
3.1
8
100
0
50
0
88
0
12
0.53
37794502--37794770
46
5.6
48
83
11
320
34
13
22
29
1.92
37794502--37794753
98
2.6
98
92
0
432
34
13
21
30
1.93
37794734--37794879
37
4.0
37
90
1
224
36
15
22
25
1.94
37800066--37800111
23
2.1
21
88
8
65
54
2
0
43
1.12
37804383--37804417
3
11.7
3
100
0
70
68
0
0
31
0.90
37804591--37804624
12
2.8
12
81
0
50
64
11
0
23
1.26
37809950--37810010
22
2.8
21
80
9
59
55
1
3
39
1.26
37809953--37810017
23
2.9
22
77
11
60
55
1
3
40
1.25
37809979--37810028
22
2.3
22
86
3
66
54
2
2
42
1.23
37810011--37810041
15
2.1
15
100
0
62
58
6
0
35
1.24
37810173--37810227
20
2.9
18
79
12
58
63
1
1
32
1.15
37813225--37813300
22
3.3
22
67
22
66
32
13
28
25
1.93
37813200--37813385
47
4.0
47
89
0
273
32
11
29
26
1.91
37813548--37813656
37
2.9
37
90
0
164
22
19
32
25
1.97
37815816--37816204
46
8.4
45
94
1
528
22
26
14
35
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37815803--37816204
138
2.9
138
90
1
581
22
26
15
35
1.94
37818356--37818407
11
4.7
11
76
9
52
63
3
0
32
1.12
37822284--37822443
85
1.9
84
90
3
259
53
10
14
21
1.70
37827358--37827417
14
4.3
15
79
14
67
20
6
45
28
1.76
37827764--37827840
36
2.2
35
83
6
93
23
24
31
20
1.98
37827714--37827840
33
3.7
36
78
8
97
25
24
28
22
1.99
37840320--37840366
2
23.5
2
100
0
94
51
0
48
0
1.00
37840603--37840725
61
2.0
61
98
0
237
43
13
1
41
1.54
37840845--37840904
16
3.6
16
70
12
50
53
3
3
40
1.34
37843335--37843364
13
2.2
14
94
5
53
83
0
0
16
0.65
37844904--37844954
23
2.2
24
82
3
59
62
3
5
27
1.36
37844913--37844978
24
2.8
24
86
2
80
65
3
4
27
1.27
37845235--37845293
27
2.2
28
85
11
79
57
6
1
33
1.35
37845226--37845322
25
4.0
24
75
19
78
57
4
3
35
1.33
37845433--37845472
19
2.0
21
90
9
66
62
5
12
20
1.48
37846082--37846111
14
2.2
14
94
5
53
80
0
6
13
0.91
37846514--37846542
13
2.2
13
100
0
58
6
0
48
44
1.29
37846552--37846608
25
2.3
25
87
6
80
17
1
40
40
1.60
37846819--37846960
44
3.2
44
66
11
101
26
17
18
37
1.93
37846977--37847121
44
3.3
44
88
0
200
31
23
18
26
1.98
37847306--37847339
14
2.5
14
90
4
52
64
2
5
26
1.30
37847373--37847407
13
2.6
14
90
9
63
54
5
8
31
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37847461--37847490
15
2.0
15
100
0
60
60
6
13
20
1.55
37847463--37847497
15
2.4
15
90
4
54
62
8
14
14
1.53
37847343--37847667
89
3.7
88
83
6
383
37
19
15
27
1.92
37847465--37847853
192
2.0
192
83
4
491
39
18
16
26
1.91
37847762--37847925
74
2.2
74
85
4
215
37
20
14
27
1.92
37847842--37847997
85
1.8
84
84
9
210
35
21
15
27
1.93
37850643--37850683
20
2.0
20
85
0
55
9
19
19
51
1.74
37860320--37860374
24
2.2
24
83
3
65
63
5
7
23
1.41
37860749--37860778
14
2.2
14
94
5
53
80
0
6
13
0.91
37861181--37861209
13
2.2
13
100
0
58
6
0
48
44
1.29
37861219--37861275
25
2.3
25
84
6
71
17
3
40
38
1.67
37864495--37864530
15
2.4
15
90
0
54
63
0
2
33
1.08
37866738--37866812
36
2.1
36
87
0
105
28
4
22
45
1.70
37866747--37866826
18
4.4
18
75
9
65
27
2
22
47
1.64
37866738--37866826
36
2.5
36
85
3
99
28
3
22
46
1.68
37873620--37873651
7
4.6
7
100
0
64
84
0
0
15
0.63
37873960--37874079
42
2.9
42
83
2
134
60
1
5
32
1.31
37873960--37874061
3
34.0
3
78
7
109
61
1
3
32
1.25
37881555--37881610
3
18.7
3
85
7
78
1
30
0
67
1.01
37883503--37883552
18
2.6
18
81
12
55
42
12
10
36
1.76
37889843--37890198
131
2.7
129
83
3
370
32
18
19
29
1.95
37893582--37893606
13
1.9
13
100
0
50
64
8
0
28
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37893831--37893879
10
4.8
10
80
14
55
40
22
22
14
1.90
37893831--37893879
21
2.4
21
89
3
73
40
22
22
14
1.90
37895943--37896006
30
2.2
29
83
8
76
14
25
1
59
1.44
37895997--37896037
19
2.1
20
95
4
75
0
24
4
70
1.06
37898450--37898498
21
2.4
20
82
3
53
42
20
22
14
1.88
37899419--37900196
133
5.9
132
87
2
1012
27
24
18
30
1.98
37899403--37900196
132
6.0
132
85
3
999
27
24
18
29
1.98
37899421--37900196
263
2.9
264
86
2
1042
27
24
18
30
1.98
37912047--37912329
131
2.2
132
88
1
406
32
17
18
31
1.94
37916582--37916626
19
2.3
20
84
3
56
35
4
2
57
1.31
37921229--37921269
21
2.0
21
90
0
64
19
29
21
29
1.98
37936581--37936611
16
1.9
16
93
0
53
67
9
0
22
1.19
37936568--37936605
18
2.1
19
85
5
51
63
7
0
28
1.23
37936601--37936637
7
5.3
7
100
0
74
59
13
0
27
1.35
37936582--37936632
14
3.2
16
81
13
61
64
11
0
23
1.26
37940450--37940508
28
2.1
27
84
3
73
16
6
20
55
1.63
37941109--37941178
35
2.0
35
100
0
140
45
5
14
34
1.68
37941717--37941750
17
2.0
17
94
0
59
44
50
0
5
1.26
37946347--37946380
17
2.0
17
94
0
59
44
50
0
5
1.26
37947922--37947955
17
2.0
17
100
0
68
11
11
41
35
1.78
37952550--37952586
18
2.1
18
100
0
74
29
10
27
32
1.90
37955697--37955730
17
2.0
17
100
0
68
11
11
41
35
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37960325--37960361
18
2.1
18
100
0
74
29
10
27
32
1.90
37968842--37968924
26
3.2
26
93
3
141
37
25
4
32
1.77
37969247--37969306
27
2.1
29
84
6
79
55
15
5
25
1.60
37971663--37971715
26
2.0
26
96
0
97
33
26
11
28
1.91
37972120--37972157
16
2.4
17
82
13
53
71
5
7
15
1.28
37973641--37973709
34
2.0
33
81
10
77
26
8
14
50
1.71
37976981--37977058
38
2.1
38
100
0
156
30
10
10
48
1.70
37979733--37979767
15
2.2
16
90
5
54
62
2
2
31
1.24
37980579--37981021
243
1.8
243
87
2
667
28
18
11
40
1.86
37985009--37985047
19
2.0
20
95
5
71
30
10
0
58
1.31
37987193--37987303
47
2.4
47
81
6
136
36
22
15
26
1.94
37990007--37990035
4
7.2
4
100
0
58
0
24
0
75
0.80
37992909--37992967
17
3.6
16
73
15
50
66
1
1
30
1.12
37992898--37992962
11
6.0
11
68
10
53
66
1
1
30
1.10
37993337--37993390
20
2.8
18
83
8
63
62
1
1
33
1.16
37996115--37996246
30
4.4
30
81
3
158
31
21
1
45
1.61
37997719--37997779
18
3.5
17
76
10
52
27
13
14
44
1.83
37997791--37997831
17
2.5
17
84
4
57
31
14
9
43
1.78
38009803--38009840
5
7.4
5
88
5
58
81
0
2
15
0.80
38017099--38017193
45
2.1
45
96
0
172
51
10
8
29
1.65
38019117--38019209
18
5.2
18
90
0
150
27
24
16
31
1.96
38027877--38027923
22
2.1
22
84
0
58
53
21
17
8
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38028977--38029092
25
4.9
24
69
22
84
68
0
2
29
1.03
38029032--38029146
17
6.6
17
69
16
67
67
2
0
28
1.09
38028975--38029111
47
2.9
45
77
12
114
67
0
2
29
1.07
38028976--38029113
9
15.7
9
70
19
71
67
0
2
29
1.08
38029032--38029152
9
13.9
9
68
14
67
67
2
0
28
1.09
38029026--38029106
25
3.3
24
80
11
83
66
1
0
32
0.99
38030882--38030921
21
1.9
21
84
0
53
22
57
15
5
1.57
38038721--38038754
15
2.3
15
89
0
50
17
14
8
58
1.61
38042383--38042433
22
2.5
19
77
17
57
39
0
0
60
0.97
38043842--38043946
53
2.1
50
84
10
133
47
3
3
44
1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279