Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  108  of  279  ( 33431 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34325483--34325507
13
1.9
13
100
0
50
36
8
0
56
1.29
34326976--34327015
11
3.6
11
93
6
64
85
12
2
0
0.71
34326972--34327018
14
3.5
13
80
13
51
87
10
2
0
0.63
34330854--34330944
47
1.9
47
95
0
164
24
18
16
40
1.90
34338312--34338361
27
2.0
27
84
11
70
46
10
12
32
1.74
34341384--34342084
351
2.0
350
96
0
1294
43
13
12
30
1.81
34345967--34346089
43
2.9
43
80
4
133
29
27
17
26
1.97
34347376--34347436
30
2.0
30
83
0
77
37
9
22
29
1.87
34348173--34348356
67
2.8
64
76
11
187
28
17
30
22
1.97
34354128--34354392
18
14.3
18
69
14
128
35
13
12
38
1.83
34354128--34354410
36
7.6
36
70
10
167
36
13
12
38
1.82
34354207--34354410
72
2.8
70
77
9
207
36
11
12
39
1.79
34354577--34354681
44
2.4
45
88
3
158
40
20
20
19
1.91
34354659--34354683
12
2.1
12
100
0
50
40
20
24
16
1.91
34360086--34360209
43
2.9
43
81
9
128
30
29
14
25
1.95
34361970--34362464
87
5.6
86
73
13
319
26
20
20
32
1.97
34362057--34362381
175
1.8
177
88
3
505
27
20
19
33
1.96
34362031--34362464
175
2.4
177
79
8
493
27
20
20
32
1.97
34366604--34366651
24
2.0
24
100
0
96
12
37
8
41
1.73
34373421--34373474
21
2.6
21
90
0
90
20
5
44
29
1.74
34374240--34374272
17
2.0
17
88
5
50
33
18
0
48
1.48
34374555--34374736
46
4.0
46
87
0
229
22
23
14
39
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34377811--34377988
43
4.2
43
87
2
247
42
20
9
27
1.83
34377815--34377988
85
2.1
83
86
4
242
43
20
9
27
1.83
34379338--34379396
30
1.9
31
86
10
86
47
1
20
30
1.60
34379634--34379689
11
4.9
11
85
8
67
33
0
1
64
1.04
34381804--34382060
46
5.7
46
88
5
328
42
14
22
21
1.88
34381823--34382032
87
2.4
87
86
4
285
40
15
22
21
1.90
34381807--34382060
133
1.9
133
87
1
375
42
13
22
21
1.88
34383342--34383371
15
2.0
15
100
0
60
40
40
6
13
1.71
34383725--34383833
48
2.3
48
93
0
182
45
14
12
26
1.81
34383773--34383905
64
2.1
64
94
0
230
45
15
14
24
1.83
34383663--34383913
112
2.3
110
87
2
351
47
15
12
25
1.80
34383785--34383887
34
3.1
34
63
25
85
45
14
12
27
1.81
34384047--34384129
18
4.9
18
69
21
63
53
15
6
25
1.65
34384045--34384084
12
3.3
12
82
0
53
55
17
2
25
1.55
34384146--34384194
12
4.1
12
82
10
55
57
12
8
22
1.61
34384146--34384188
18
2.4
18
80
0
50
55
11
9
23
1.64
34384723--34384795
31
2.4
29
78
17
85
21
9
20
47
1.78
34396668--34396707
3
13.3
3
100
0
80
0
32
0
67
0.91
34399455--34399492
19
2.0
20
89
5
60
42
10
23
23
1.85
34402146--34402190
17
2.7
16
86
13
56
66
4
6
22
1.33
34404896--34404953
26
2.2
26
90
0
89
37
22
5
34
1.76
34407876--34407954
39
2.0
39
97
0
149
30
16
10
43
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34426576--34426882
106
2.9
107
86
3
406
36
9
6
47
1.63
34435943--34435998
20
2.8
20
74
17
53
62
1
1
33
1.16
34436378--34436437
9
6.7
9
77
7
68
43
18
10
28
1.82
34436379--34436437
27
2.2
27
87
0
82
44
18
8
28
1.79
34436457--34436554
6
15.5
6
85
10
133
17
0
5
77
0.94
34436457--34436549
32
2.9
31
91
3
150
17
0
5
77
0.95
34436457--34436554
38
2.6
38
98
1
187
17
0
5
77
0.94
34436579--34436603
13
1.9
13
100
0
50
12
0
48
40
1.40
34436580--34436617
18
2.1
18
95
0
67
7
0
47
44
1.32
34436707--34436741
18
1.9
18
100
0
70
20
17
17
45
1.85
34437395--34437461
29
2.3
29
81
2
80
40
4
5
49
1.48
34437986--34438028
14
2.8
15
80
16
52
58
0
0
41
0.98
34438430--34438489
9
6.7
9
77
7
68
43
18
10
28
1.82
34438431--34438489
27
2.2
27
87
0
82
44
18
8
28
1.79
34438509--34438568
6
9.5
6
85
10
84
16
0
5
78
0.92
34438520--34438568
20
2.5
20
93
3
82
18
0
6
75
1.00
34438514--34438563
26
1.9
26
100
0
100
18
0
6
76
0.99
34438593--34438617
13
1.9
13
100
0
50
12
0
48
40
1.40
34438594--34438631
18
2.1
18
95
0
67
7
0
47
44
1.32
34438721--34438755
18
1.9
18
100
0
70
20
17
17
45
1.85
34439409--34439475
29
2.3
29
81
2
80
40
4
5
49
1.48
34440000--34440042
14
2.8
15
80
16
52
58
0
0
41
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34444445--34444479
18
2.0
17
88
5
52
45
0
0
54
0.99
34444712--34444750
16
2.4
16
86
0
51
28
33
2
35
1.71
34444725--34444781
16
3.6
16
95
0
87
33
36
0
29
1.58
34448841--34448868
4
7.0
4
100
0
56
0
25
50
25
1.50
34449217--34449250
17
1.9
18
94
5
61
47
0
0
52
1.00
34450142--34450205
21
3.1
21
72
14
53
25
0
6
68
1.12
34450168--34450216
26
2.0
26
88
8
75
30
0
6
63
1.19
34450906--34450960
28
2.0
28
85
7
76
54
16
0
29
1.42
34450917--34450986
28
2.5
27
84
6
86
48
18
1
31
1.57
34451596--34451622
12
2.2
12
100
0
54
44
0
25
29
1.54
34452375--34452710
168
2.0
168
100
0
672
38
13
19
27
1.90
34453439--34453967
264
2.0
264
95
0
941
34
27
15
22
1.94
34454559--34454584
10
2.6
10
100
0
52
0
7
0
92
0.39
34454805--34454866
18
3.4
18
76
10
63
53
0
1
45
1.10
34455101--34455199
29
3.4
27
75
18
92
35
6
0
58
1.23
34455080--34455225
58
2.5
58
81
7
170
30
4
1
63
1.23
34455127--34455306
9
19.4
9
66
17
75
32
2
1
63
1.16
34455068--34455197
20
6.7
19
69
11
59
33
6
0
60
1.27
34455118--34455210
29
3.2
29
80
7
116
34
3
0
62
1.11
34455196--34455226
8
3.8
8
91
8
53
22
0
3
74
0.96
34455166--34455243
19
4.2
19
78
8
70
30
2
1
65
1.14
34455329--34455548
90
2.5
86
86
7
309
32
9
20
37
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34457130--34457166
18
2.1
18
89
0
56
62
18
5
13
1.50
34463581--34463632
20
2.6
20
75
9
52
57
5
1
34
1.33
34466143--34466172
12
2.5
12
94
0
51
46
0
6
46
1.29
34466251--34466297
16
2.7
17
80
9
51
63
4
0
31
1.13
34466254--34466302
17
2.7
19
78
15
59
61
8
0
30
1.25
34469565--34469875
87
3.6
87
88
0
471
23
21
24
30
1.99
34470296--34470491
108
1.8
108
89
2
313
46
10
17
25
1.80
34470457--34470557
45
2.3
43
80
10
112
52
8
12
25
1.68
34470827--34470890
13
5.1
12
83
11
76
0
9
4
85
0.72
34470833--34470891
8
7.8
8
81
14
63
0
10
5
84
0.76
34470827--34470879
21
2.5
22
84
9
74
0
9
3
86
0.68
34471302--34471349
8
5.9
8
85
9
53
10
6
0
83
0.81
34471299--34471347
14
3.4
14
78
13
55
10
6
0
83
0.80
34471300--34471361
22
2.8
22
82
7
63
8
6
3
82
0.94
34471344--34471423
8
8.6
9
75
18
58
1
10
10
78
1.01
34471367--34471406
17
2.4
16
87
8
53
2
12
7
77
1.07
34471335--34471423
8
10.4
8
70
17
54
2
8
8
79
1.01
34472709--34472833
62
2.0
62
92
0
205
29
8
23
38
1.85
34474538--34474623
3
29.3
3
73
19
60
66
1
3
29
1.16
34474543--34474623
18
4.4
18
77
13
76
66
1
3
28
1.16
34475163--34475189
4
6.8
4
100
0
54
22
0
0
77
0.76
34481407--34481448
17
2.7
15
85
14
50
69
2
0
28
1.01
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34481805--34481866
32
1.9
32
86
0
88
35
12
8
43
1.73
34486345--34486691
35
9.6
34
77
10
205
37
13
21
26
1.91
34486340--34486690
73
4.8
73
81
4
352
37
13
21
27
1.92
34486345--34486690
147
2.4
146
80
5
369
37
13
21
26
1.91
34486798--34486841
6
6.8
6
87
7
52
65
2
0
31
1.05
34489608--34489742
56
2.7
47
78
18
162
31
14
17
36
1.90
34489631--34489743
56
2.0
56
96
0
208
32
12
17
37
1.87
34490148--34490193
14
3.2
15
81
9
51
52
30
4
13
1.59
34490346--34490389
22
2.0
22
90
0
70
50
36
0
13
1.42
34490397--34490448
22
2.2
24
83
10
72
51
28
3
15
1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279