genome.fa.s8.2.7.7.80.10.50.1000.204.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  204  of  279  ( 33431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66635199--66635298	50	2.1	49	80	16	111	35	20	3	42	1.67
66638741--66638822	23	3.7	22	73	16	80	37	17	19	25	1.93
66641633--66641755	42	2.9	42	80	4	140	33	26	17	21	1.96
66641638--66641809	44	4.0	43	77	9	154	33	25	18	22	1.96
66647708--66647771	31	2.1	31	93	0	110	39	10	18	31	1.86
66648423--66648463	18	2.2	20	82	8	50	24	2	4	68	1.22
66650073--66650135	21	3.0	21	88	4	83	23	25	23	26	2.00
66651178--66651472	163	1.8	163	83	5	400	40	12	18	28	1.87
66652770--66652832	6	10.3	6	86	3	81	14	15	3	66	1.37
66655108--66655677	48	11.8	48	79	0	575	26	28	17	28	1.97
66655108--66655677	96	5.9	96	87	0	782	26	28	17	28	1.97
66664928--66665040	56	2.0	56	96	0	208	38	15	14	30	1.88
66668386--66668415	15	2.0	15	100	0	60	66	0	0	33	0.92
66668399--66668444	19	2.4	19	76	20	51	63	4	2	30	1.26
66675675--66675706	5	6.2	5	92	7	55	75	0	3	21	0.95
66678292--66678447	79	2.0	79	97	0	294	43	22	10	23	1.84
66681226--66681319	39	2.4	39	83	0	116	25	26	18	29	1.98
66695086--66695126	3	13.7	3	94	0	73	0	36	0	63	0.95
66695916--66695963	20	2.4	19	80	10	60	47	6	2	43	1.40
66696408--66696437	11	2.7	11	94	0	51	40	23	6	30	1.80
66699747--66699804	24	2.4	24	100	0	116	34	10	17	37	1.84
66699740--66699827	31	3.1	31	78	21	127	32	10	18	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66700004--66700081	36	2.2	36	90	0	120	14	8	25	51	1.71
66700965--66701007	15	2.6	16	78	14	52	48	16	18	16	1.81
66700974--66701004	15	2.1	15	100	0	62	48	12	19	19	1.81
66707793--66707826	17	2.0	17	88	0	50	14	17	26	41	1.88
66718778--66718835	24	2.3	24	94	5	98	8	15	8	67	1.41
66718763--66718848	32	2.7	31	77	15	88	15	12	6	65	1.46
66718963--66718992	14	2.2	14	94	5	53	20	0	6	73	1.05
66720452--66720601	42	3.5	42	79	5	167	32	14	22	30	1.93
66730902--66730935	16	2.1	16	94	0	59	38	14	23	23	1.92
66733719--66733756	18	2.1	18	100	0	76	52	26	15	5	1.64
66736362--66736406	19	2.2	20	84	11	65	26	24	20	28	1.99
66743311--66743467	43	3.7	42	77	13	126	33	22	14	28	1.94
66752731--66752772	16	2.7	15	79	20	50	45	2	0	52	1.13
66752729--66752776	22	2.3	23	82	17	68	43	2	0	54	1.12
66759315--66759428	27	4.2	27	82	5	149	32	21	14	31	1.93
66759315--66759428	54	2.1	54	88	1	165	32	21	14	31	1.93
66759421--66759465	23	2.0	23	95	0	81	24	24	24	26	2.00
66763004--66763035	15	2.1	15	94	0	55	31	9	6	53	1.58
66763136--66763286	42	3.6	42	80	7	171	31	15	23	29	1.95
66768310--66768467	43	3.7	43	72	12	128	22	17	25	33	1.96
66779556--66779583	14	2.0	14	100	0	56	14	0	0	85	0.59
66780610--66780649	13	3.1	13	85	0	53	80	0	0	20	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66780621--66780649	7	4.3	7	91	8	51	86	0	0	13	0.58
66789625--66789758	64	2.1	65	87	5	193	47	5	17	29	1.70
66790486--66790755	134	2.0	134	99	0	531	39	12	13	34	1.82
66792698--66792965	48	5.6	48	83	1	288	27	30	16	24	1.97
66794951--66795040	27	3.3	27	85	0	117	32	26	15	25	1.96
66794973--66795107	66	2.0	67	85	1	182	33	25	14	27	1.94
66795058--66795134	27	2.8	28	86	2	111	29	19	14	36	1.91
66794952--66795125	93	1.9	93	82	3	224	31	25	13	29	1.93
66806708--66806932	122	1.9	120	85	5	310	40	12	18	28	1.87
66812769--66812807	21	1.9	20	84	5	51	28	12	12	46	1.79
66814459--66814501	6	7.2	6	89	0	68	37	16	11	34	1.85
66814459--66814504	18	2.6	18	100	0	92	41	15	10	32	1.82
66826353--66826428	38	2.0	38	94	0	134	34	17	25	23	1.96
66826391--66826504	45	2.5	45	88	4	158	41	13	23	21	1.88
66826441--66826871	223	1.9	223	100	0	862	38	12	23	25	1.89
66826998--66827044	25	2.0	25	83	8	62	53	4	14	27	1.60
66842983--66843007	12	2.1	12	100	0	50	40	16	36	8	1.77
66848097--66848151	25	2.2	26	83	3	67	69	9	5	16	1.34
66853426--66853482	24	2.3	25	84	6	71	52	1	1	43	1.21
66858559--66858823	68	3.9	66	79	4	210	37	15	20	26	1.92
66858589--66858823	67	3.5	67	78	7	208	37	14	20	27	1.91
66859811--66859931	42	2.9	41	80	2	118	15	21	19	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66872483--66872512	15	1.9	15	93	6	51	60	0	0	40	0.97
66874380--66874585	46	4.5	46	72	11	154	24	28	18	28	1.98
66882000--66882172	46	3.7	45	76	7	159	24	27	19	28	1.98
66888347--66888398	24	2.2	24	96	3	97	17	5	7	69	1.33
66904363--66904449	37	2.4	37	94	0	147	24	33	20	21	1.97
66904592--66904723	48	2.8	48	94	0	228	30	27	6	35	1.83
66904584--66904737	48	3.2	48	90	0	227	33	28	5	32	1.81
66908814--66908845	5	6.6	5	92	7	57	81	0	18	0	0.70
66919419--66919507	20	4.6	20	74	14	96	50	11	12	25	1.73
66919403--66919482	37	2.2	37	93	0	133	53	12	7	26	1.64
66920615--66920670	10	5.2	10	77	14	58	32	3	1	62	1.23
66920618--66920670	22	2.4	23	81	9	65	32	3	1	62	1.24
66920617--66920660	5	8.4	5	80	9	52	31	2	2	63	1.19
66920617--66920660	11	4.2	10	82	8	52	31	2	2	63	1.19
66925526--66925943	39	10.7	38	87	3	575	29	28	22	19	1.98
66925526--66925943	78	5.3	78	92	1	667	29	28	22	19	1.98
66928077--66928111	3	11.7	3	87	0	52	28	31	2	37	1.72
66931480--66931657	27	6.6	27	80	6	162	28	29	15	26	1.96
66931507--66931656	82	1.8	81	85	4	212	28	30	16	26	1.96
66939515--66939692	27	6.6	27	84	3	205	29	28	15	26	1.96
66939536--66939691	82	1.9	81	88	3	233	29	28	15	26	1.96
66941720--66941762	18	2.5	17	82	14	52	60	6	2	30	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66947379--66947434	23	2.5	22	80	8	67	32	7	1	58	1.35
66950398--66950475	39	2.0	39	94	0	138	24	25	28	21	1.99
66951886--66952010	55	2.4	53	87	11	181	25	8	9	56	1.58
66953253--66953333	21	3.8	20	82	6	81	32	1	34	32	1.66
66953265--66953333	7	9.9	7	79	0	75	31	0	37	30	1.58
66954236--66954500	75	3.3	81	72	15	203	35	11	22	30	1.90
66956008--66956046	20	2.0	19	85	5	51	61	17	0	20	1.34
66957304--66957350	24	2.0	24	86	0	67	31	19	6	42	1.76
66957472--66957519	24	2.1	24	84	7	64	52	10	12	25	1.71
66957516--66957579	19	3.3	19	72	20	69	40	0	6	53	1.26
66957515--66957590	39	1.9	39	100	0	152	40	0	5	53	1.23
66957691--66957840	9	16.7	9	82	6	153	45	22	1	30	1.61
66963307--66963379	21	3.5	21	86	0	92	30	19	46	4	1.68
66963612--66963697	31	2.7	31	81	3	91	15	6	17	60	1.56
66970316--66970406	41	2.3	39	80	10	103	30	21	24	23	1.99
66970548--66970582	17	2.0	17	88	5	52	20	0	14	65	1.26
66971145--66971183	18	2.2	18	95	0	69	33	0	15	51	1.44
66971259--66971348	36	2.4	37	75	10	94	28	2	24	44	1.66
66972854--66972944	46	2.0	45	97	0	164	27	15	25	30	1.95
66974387--66974520	64	2.1	64	94	0	232	38	10	4	47	1.58
66974400--66974534	64	2.1	64	84	4	184	40	8	4	46	1.54
66974568--66974638	24	3.0	24	77	8	81	28	18	7	46	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66974680--66975626	241	3.9	241	98	0	1815	33	17	15	33	1.91
66974680--66975626	481	2.0	482	98	0	1833	33	17	15	33	1.91
66975746--66975873	9	13.6	9	76	9	121	46	21	0	31	1.57
66975763--66975840	39	2.0	39	97	0	147	46	21	0	32	1.52
66975759--66975871	57	2.0	57	89	0	172	46	23	0	30	1.58
66981455--66981509	21	2.6	21	80	5	58	29	18	49	3	1.64
66981731--66981798	32	2.2	32	83	2	84	17	2	17	61	1.46
66981873--66982035	43	3.8	42	91	4	254	22	31	19	26	1.97
66981873--66982030	86	1.8	86	94	0	280	23	32	18	24	1.97
66991069--66991114	18	2.8	18	84	15	64	0	30	41	28	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279