genome.fa.s8.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  113  of  279  ( 33431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35743820--35743930	54	2.1	54	84	3	143	34	24	24	17	1.96
35745552--35745661	26	4.2	26	91	6	170	37	24	3	34	1.73
35747063--35747171	42	2.6	42	80	4	130	31	22	18	27	1.97
35756731--35756791	30	2.0	30	83	0	77	39	4	24	31	1.77
35759454--35759498	21	2.1	21	100	0	90	37	4	13	44	1.64
35760098--35760169	31	2.4	30	92	2	117	37	1	4	56	1.27
35760123--35760169	15	3.1	15	78	0	58	36	0	2	61	1.08
35760079--35760172	31	2.8	34	79	14	113	39	1	5	54	1.30
35769128--35769160	2	16.5	2	100	0	66	0	0	48	51	1.00
35769869--35769918	26	1.9	26	83	0	64	46	24	2	28	1.64
35770033--35770086	22	2.3	24	81	12	60	62	1	0	35	1.06
35777874--35777918	22	2.0	22	100	0	90	28	13	13	44	1.81
35778070--35778320	54	4.6	54	79	4	220	27	18	13	39	1.89
35778121--35778380	108	2.4	108	83	1	306	28	17	13	40	1.88
35778124--35778358	54	4.4	54	81	1	256	27	18	14	39	1.89
35778071--35778383	54	5.8	54	78	4	175	29	18	12	39	1.88
35778233--35778437	54	3.8	54	76	4	164	29	19	13	38	1.89
35778138--35778436	108	2.8	108	81	2	262	28	18	13	39	1.89
35778775--35778998	24	9.4	23	74	4	142	26	18	12	42	1.85
35778725--35778890	48	3.4	48	83	0	188	26	16	14	42	1.86
35778774--35779023	119	2.1	120	83	3	324	26	16	13	44	1.84
35778822--35778995	71	2.4	72	82	1	215	26	18	13	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35778894--35779048	48	3.2	48	81	1	177	27	18	12	42	1.85
35779741--35779774	12	2.8	12	91	8	52	58	0	14	26	1.36
35780649--35780680	10	3.3	10	95	4	57	62	0	6	31	1.20
35780668--35780711	17	2.4	18	77	14	54	56	9	0	34	1.31
35780706--35780735	15	2.0	15	100	0	60	40	13	0	46	1.43
35782179--35782274	39	2.5	38	82	1	120	38	5	8	47	1.56
35783512--35783593	38	2.1	39	86	2	112	31	13	6	48	1.67
35785620--35785961	41	8.3	43	91	1	448	36	23	21	18	1.95
35785598--35785961	82	4.5	82	94	2	594	35	23	21	19	1.95
35785598--35785961	123	3.0	123	89	2	540	35	23	21	19	1.95
35786119--35786163	14	3.2	14	80	0	54	26	0	24	48	1.51
35786130--35786214	21	3.7	21	71	19	71	28	2	27	42	1.68
35786134--35786229	49	2.0	46	90	6	147	30	3	25	41	1.70
35786252--35786280	14	2.0	15	93	6	51	27	0	27	44	1.54
35791195--35791222	4	7.0	4	100	0	56	25	0	25	50	1.50
35798714--35798756	18	2.4	18	77	14	54	53	0	6	39	1.28
35798826--35798869	20	2.4	17	88	11	61	65	0	31	2	1.05
35799713--35799746	6	5.7	6	92	0	50	26	17	5	50	1.69
35799713--35799746	12	2.8	12	90	0	59	26	17	5	50	1.69
35803269--35803670	132	3.1	131	79	5	411	36	17	17	28	1.93
35803998--35804028	14	2.2	14	94	0	53	54	6	16	22	1.64
35804439--35804478	19	2.1	19	100	0	80	35	10	15	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35805978--35806038	22	2.8	22	75	7	61	4	14	18	62	1.49
35806208--35806240	15	2.3	15	89	5	50	3	0	12	84	0.72
35806206--35806251	24	1.9	24	86	8	67	2	0	17	80	0.81
35810251--35810329	38	2.1	38	95	0	140	53	2	12	31	1.52
35811526--35811661	40	3.5	40	71	12	120	22	19	27	30	1.98
35817939--35818056	34	3.5	33	77	12	116	39	5	9	45	1.58
35818652--35818699	10	4.9	9	78	16	51	33	2	2	62	1.18
35818654--35818699	20	2.3	20	85	7	58	34	2	2	60	1.21
35823645--35823686	11	3.3	13	77	16	52	69	2	0	28	1.01
35823648--35823695	24	2.0	25	87	4	71	66	2	0	31	1.03
35833812--35833859	24	2.0	24	100	0	96	41	12	4	41	1.62
35834116--35834160	13	3.5	13	77	22	58	60	0	0	40	0.97
35834100--35834164	26	2.4	26	92	5	103	60	1	1	36	1.16
35834150--35834192	18	2.4	18	96	0	77	51	0	2	46	1.13
35834272--35834313	19	2.2	20	86	4	59	50	14	9	26	1.73
35834821--35834872	25	2.1	25	88	0	77	40	15	7	36	1.76
35836230--35836320	41	2.2	42	80	2	103	38	0	3	58	1.15
35836687--35836717	15	2.1	15	93	0	53	9	12	0	77	0.99
35841431--35841509	41	1.9	42	86	2	115	41	17	25	15	1.88
35841434--35841501	21	3.3	21	70	4	57	41	17	25	16	1.89
35845226--35845282	12	5.2	12	76	19	63	52	0	0	47	1.00
35845233--35845284	22	2.4	22	96	0	95	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35845233--35845292	22	2.7	22	92	0	84	56	0	3	40	1.16
35853536--35853563	13	2.2	13	100	0	56	53	10	7	28	1.62
35855077--35855131	27	2.0	27	100	0	110	45	10	14	29	1.79
35864311--35864367	28	2.0	28	100	0	114	47	0	0	52	1.00
35867335--35867385	21	2.7	18	85	14	59	37	1	5	54	1.36
35867922--35868010	43	2.1	43	91	4	144	48	13	8	29	1.73
35871222--35871248	5	5.4	5	100	0	54	40	0	18	40	1.51
35871366--35871487	43	2.8	43	85	2	156	26	13	23	36	1.93
35871372--35871528	43	3.7	42	78	7	140	29	13	22	34	1.92
35874345--35874501	43	3.7	42	79	12	151	22	19	26	31	1.98
35877313--35877357	20	2.2	20	88	0	63	48	2	13	35	1.54
35882600--35882629	12	2.6	12	94	5	53	40	6	0	53	1.27
35883454--35883499	19	2.4	19	77	0	56	45	8	2	43	1.47
35887183--35887311	50	2.5	51	88	5	190	37	16	20	25	1.93
35887287--35887404	31	3.8	31	91	4	184	27	19	28	24	1.99
35887454--35887594	49	3.0	47	83	5	167	29	14	25	31	1.95
35891114--35891171	27	2.1	28	84	6	75	22	20	1	55	1.53
35891541--35891591	18	2.9	18	88	8	70	72	1	0	25	0.95
35891556--35891591	17	2.1	17	94	5	63	75	0	0	25	0.81
35891888--35891912	12	2.1	12	100	0	50	40	0	0	60	0.97
35892899--35892962	31	2.1	31	85	2	85	35	6	15	42	1.72
35893709--35893759	18	2.7	18	77	14	50	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35905709--35905759	26	1.9	26	84	4	66	27	19	3	49	1.66
35906683--35906725	17	2.5	17	100	0	86	76	18	0	4	0.95
35906681--35906750	22	3.5	21	83	14	94	75	18	1	4	1.04
35907680--35907714	16	2.3	15	90	5	52	31	2	2	62	1.24
35919661--35920227	74	7.7	73	91	2	852	32	16	20	30	1.95
35922136--35922170	16	2.3	15	90	5	52	31	2	2	62	1.24
35927508--35927666	27	5.9	27	80	11	166	32	22	25	20	1.97
35927526--35927669	54	2.7	53	90	4	216	32	23	25	18	1.97
35940607--35940663	16	3.6	16	95	0	105	26	0	36	36	1.57
35940898--35940939	15	2.7	16	82	14	52	52	2	0	45	1.13
35940907--35940948	15	2.9	15	82	10	52	52	0	0	47	1.00
35940944--35940973	15	1.9	16	93	6	53	50	6	0	43	1.28
35940933--35941120	61	3.1	61	69	11	197	48	6	1	43	1.38
35940901--35941130	120	1.9	120	98	0	442	49	6	1	42	1.37
35941038--35941072	18	2.0	17	88	5	52	54	0	0	45	0.99
35946854--35946938	43	2.0	41	82	13	102	52	5	1	40	1.33
35958198--35958357	51	3.2	50	91	1	248	29	23	15	32	1.95
35962488--35962523	13	2.8	14	84	16	51	27	25	0	47	1.52
35962475--35962515	18	2.2	19	87	12	59	29	24	0	46	1.53
35963012--35963050	18	2.1	19	90	4	62	48	10	0	41	1.37
35964365--35964421	5	11.0	5	78	14	62	56	1	0	42	1.10
35964364--35964419	12	4.5	12	81	16	69	55	1	0	42	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35964366--35964421	26	2.2	26	90	6	69	55	1	0	42	1.10
35966128--35966194	24	2.8	22	76	14	62	65	14	2	16	1.39
35967335--35967375	18	2.4	17	84	8	55	24	2	2	70	1.11
35968052--35968109	20	2.9	19	87	5	71	55	8	12	24	1.64
35968059--35968116	20	2.8	20	84	2	71	56	10	10	22	1.62
35968391--35968425	14	2.4	15	90	4	54	71	2	0	25	1.00
35968421--35968522	30	3.4	29	82	8	116	29	21	3	45	1.70
35968890--35968924	3	11.3	3	93	6	61	68	0	31	0	0.90
35980966--35981433	70	6.8	70	75	12	373	30	15	19	33	1.94
35981228--35981532	73	4.0	76	85	7	395	33	15	18	32	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279