Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  103  of  279  ( 33431 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32835828--32835938
43
2.6
43
80
7
129
27
26
19
26
1.99
32841259--32841301
3
14.3
3
90
0
68
67
4
0
27
1.10
32841474--32841596
60
2.0
60
90
3
194
52
9
17
20
1.72
32843723--32843853
34
3.9
34
92
0
217
25
20
26
26
1.99
32844232--32844270
19
2.1
19
85
9
53
38
15
15
30
1.88
32844826--32844883
24
2.5
23
76
18
57
6
12
8
72
1.28
32844827--32844883
23
2.5
24
83
11
66
7
12
8
71
1.29
32845157--32845202
13
3.7
13
77
11
51
19
0
2
78
0.86
32845381--32845517
51
2.7
53
72
16
135
49
3
3
43
1.37
32847128--32847179
23
2.3
23
83
6
61
17
7
15
59
1.58
32847208--32847241
15
2.1
16
89
10
52
47
0
2
50
1.16
32847854--32847889
18
2.1
17
89
5
54
36
2
5
55
1.38
32848718--32848743
12
2.2
12
100
0
52
7
15
30
46
1.74
32848779--32848883
41
2.6
41
86
3
140
39
19
20
21
1.93
32849628--32849665
19
2.0
20
94
5
69
65
2
5
26
1.27
32850523--32850575
7
7.6
7
100
0
106
60
0
13
26
1.33
32850522--32850620
7
13.6
7
92
3
99
64
3
7
25
1.33
32850565--32850620
8
7.2
8
88
8
62
69
5
1
23
1.18
32854610--32854654
22
2.0
22
91
0
72
33
2
15
48
1.57
32858386--32858430
22
2.0
22
91
0
72
33
2
15
48
1.57
32859506--32859557
20
2.6
20
84
6
61
34
1
23
40
1.66
32860364--32860414
23
2.1
23
82
13
59
29
0
3
66
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32860382--32860422
22
1.9
21
85
5
55
34
0
0
65
0.93
32860787--32860882
48
2.0
48
84
6
124
58
6
4
31
1.42
32863784--32863864
40
2.0
40
97
0
153
33
19
12
34
1.89
32879779--32879963
92
2.0
92
97
0
352
35
16
14
34
1.88
32882750--32882875
61
2.1
61
98
0
243
30
9
19
39
1.84
32883627--32883685
24
2.5
24
100
0
118
30
15
20
33
1.93
32884064--32884108
23
2.0
23
82
8
56
37
8
13
40
1.76
32884922--32884950
15
1.9
15
100
0
58
51
13
6
27
1.66
32889450--32889584
71
1.9
71
95
0
243
41
7
20
30
1.80
32895114--32895245
44
2.9
45
80
4
131
37
14
20
28
1.92
32906253--32906293
16
2.6
15
92
7
64
63
0
2
34
1.08
32906253--32906292
15
2.5
16
84
12
55
65
0
2
32
1.06
32907730--32907790
28
2.2
28
97
2
115
62
6
1
29
1.30
32908618--32908650
2
16.5
2
100
0
66
0
0
48
51
1.00
32908648--32908691
4
11.2
4
85
4
63
22
2
25
50
1.61
32911445--32911529
27
3.1
27
65
0
71
32
20
27
20
1.97
32914020--32914068
24
2.0
24
100
0
98
36
20
20
22
1.95
32914276--32914336
12
5.0
12
74
8
52
75
0
13
11
1.05
32915217--32915481
68
3.9
68
87
3
372
30
11
21
36
1.89
32931246--32931289
21
2.1
21
91
0
70
20
29
20
29
1.98
32939007--32939101
30
3.2
30
86
0
145
26
48
6
18
1.72
32940670--32941782
76
14.4
76
72
13
562
32
21
16
28
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32940633--32941876
232
5.3
227
79
10
820
33
21
16
28
1.95
32941099--32941782
310
2.2
303
80
6
752
33
23
16
27
1.95
32952409--32952439
14
2.2
14
100
0
62
48
9
32
9
1.69
32957003--32957463
230
2.0
232
91
0
746
25
16
22
34
1.95
32957096--32958394
154
8.5
152
75
11
971
28
16
21
32
1.96
32957326--32957852
78
6.9
74
81
7
538
28
16
22
32
1.96
32957915--32958389
75
6.4
73
87
4
366
31
16
20
32
1.94
32957915--32958390
148
3.2
148
82
4
528
31
16
20
32
1.94
32957868--32958390
77
7.0
75
86
4
619
31
16
20
31
1.95
32959199--32959252
18
3.3
18
66
28
57
22
50
7
20
1.73
32959189--32959257
30
2.3
30
94
0
129
26
52
5
15
1.66
32969344--32969411
23
3.0
23
80
6
68
72
1
5
20
1.14
32969361--32969412
24
2.1
25
82
10
63
75
1
3
19
1.06
32969361--32969412
25
2.1
25
85
3
70
75
1
3
19
1.06
32969557--32969587
15
2.1
15
93
0
53
54
6
0
38
1.26
32970096--32970131
18
1.9
18
88
5
54
61
0
0
38
0.96
32970364--32970400
18
2.1
18
89
0
56
32
5
2
59
1.34
32970374--32970425
27
2.0
27
88
3
79
34
1
0
63
1.06
32970391--32970435
17
2.4
20
85
10
60
31
0
0
68
0.89
32972082--32972112
6
5.2
6
100
0
62
16
0
83
0
0.64
32975936--32975979
21
2.1
21
83
8
54
47
6
6
38
1.57
32978579--32978603
5
5.0
5
100
0
50
40
0
20
40
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32993788--32993816
3
9.7
3
100
0
58
31
0
0
68
0.89
33000520--33000570
24
2.2
22
86
6
66
0
21
3
74
0.98
33015854--33016330
83
5.8
83
84
7
521
25
18
21
34
1.96
33020101--33020506
46
8.8
46
92
0
580
38
14
24
22
1.91
33021866--33021935
21
3.2
22
72
8
54
35
5
2
55
1.38
33033411--33033464
24
2.3
23
84
9
72
37
3
18
40
1.69
33038801--33038867
22
3.2
20
76
14
64
16
35
25
22
1.94
33039158--33039191
14
2.4
15
90
9
54
11
0
41
47
1.40
33040459--33040483
13
1.9
13
100
0
50
32
40
24
4
1.73
33051575--33051680
53
2.0
53
96
0
194
37
17
6
37
1.76
33064547--33064671
46
2.7
46
93
2
207
36
24
16
23
1.94
33069493--33069568
33
2.3
34
81
6
93
39
2
1
56
1.21
33069859--33069904
20
2.3
20
85
7
58
69
2
2
26
1.11
33069868--33069906
20
2.0
20
90
10
62
66
0
2
30
1.05
33073197--33073244
25
1.9
25
86
0
69
33
25
16
25
1.96
33073292--33073347
11
5.5
11
71
16
57
35
12
19
32
1.89
33073281--33073347
20
3.3
20
93
0
116
34
11
20
32
1.90
33077875--33077944
26
2.7
26
91
2
115
22
20
34
22
1.97
33081999--33082023
2
12.5
2
100
0
50
48
0
0
52
1.00
33088040--33088073
17
1.9
18
88
5
52
55
5
0
38
1.24
33090971--33090997
13
2.1
13
100
0
54
7
7
29
55
1.55
33091274--33091325
20
2.6
21
81
9
63
61
0
0
38
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33091989--33092015
3
9.0
3
100
0
54
66
0
0
33
0.92
33092108--33092140
17
1.9
17
88
11
50
66
3
3
27
1.21
33092923--33092983
31
2.0
31
100
0
122
45
14
13
26
1.81
33093705--33093766
31
2.0
31
100
0
124
32
16
16
35
1.91
33098346--33098372
6
4.5
6
100
0
54
70
0
14
14
1.17
33101113--33101146
16
2.1
16
88
0
50
50
14
17
17
1.79
33103947--33103987
21
2.0
21
90
0
64
29
21
29
19
1.98
33105893--33105926
16
2.1
16
88
0
50
50
14
17
17
1.79
33111881--33111943
31
2.0
31
93
0
108
60
1
12
25
1.42
33112320--33112393
34
2.2
34
87
4
105
37
17
14
29
1.90
33112320--33112402
34
2.4
34
86
4
96
39
16
14
28
1.88
33112386--33112441
24
2.3
24
93
0
94
42
8
12
35
1.74
33112386--33112449
24
2.7
24
90
0
83
43
10
12
32
1.77
33117388--33117421
14
2.4
14
100
0
68
52
0
26
20
1.46
33124054--33124087
16
2.1
17
94
5
61
61
11
5
20
1.50
33124646--33124702
23
2.5
24
83
13
75
56
5
8
29
1.52
33124785--33124858
21
3.5
21
75
14
73
63
4
1
31
1.21
33125453--33125500
16
3.0
16
87
0
69
54
0
45
0
0.99
33126322--33126393
5
14.8
5
74
21
64
38
1
4
55
1.28
33126351--33126393
19
2.3
19
92
8
70
41
2
0
55
1.12
33126403--33126436
17
2.0
17
94
0
59
79
0
17
2
0.86
33126403--33126436
9
3.9
9
84
7
52
79
0
17
2
0.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33127006--33127063
30
1.9
30
86
6
82
43
3
22
31
1.70
33127403--33127488
46
1.9
44
90
4
136
33
13
23
29
1.93
33127405--33127529
44
2.8
45
81
4
135
34
14
23
28
1.94
33133134--33133191
30
1.9
30
89
0
89
41
3
24
31
1.71
33133403--33133434
13
2.5
13
94
0
55
31
0
12
56
1.37
33133529--33133713
50
3.7
50
99
0
361
26
23
32
16
1.96
33135933--33135967
14
2.6
13
86
8
52
48
8
14
28
1.73
33135902--33136306
87
4.6
87
83
4
474
34
19
17
28
1.94
33135902--33136306
176
2.3
175
85
4
521
34
19
17
28
1.94
33149020--33149076
23
2.5
24
83
13
75
56
5
8
29
1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279