genome.fa.s8.2.7.7.80.10.50.1000.212.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  212  of  279  ( 33431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69127063--69127220	43	3.7	43	79	3	122	30	24	17	27	1.97
69127080--69127220	43	3.3	43	83	1	185	30	26	17	25	1.97
69128821--69128863	22	1.9	23	85	4	61	62	25	2	9	1.37
69131906--69131932	13	2.1	13	100	0	54	37	7	7	48	1.59
69132662--69132845	41	4.5	41	92	0	280	21	23	22	32	1.98
69132662--69132873	41	5.2	41	90	2	266	21	23	23	32	1.98
69134632--69134658	5	5.4	5	100	0	54	81	0	0	18	0.69
69136357--69136544	55	3.5	53	84	6	227	35	17	24	22	1.95
69136657--69136695	16	2.4	16	84	12	53	35	2	23	38	1.68
69143615--69143846	123	1.9	123	93	0	401	28	21	11	39	1.87
69155652--69155717	29	2.3	29	82	10	73	28	3	3	65	1.23
69157263--69157336	30	2.4	31	76	14	75	24	18	8	48	1.75
69160049--69160102	27	2.0	27	85	7	74	20	11	12	55	1.67
69167017--69167049	16	2.1	16	94	0	57	30	15	24	30	1.95
69190625--69190691	27	2.5	27	97	2	127	40	19	22	17	1.92
69198961--69199026	22	3.1	22	75	12	75	48	16	3	31	1.62
69206872--69206897	3	8.7	3	100	0	52	69	0	0	30	0.89
69217030--69217311	102	2.7	103	81	9	306	41	2	28	28	1.69
69217109--69217311	105	1.9	109	88	5	315	41	1	28	27	1.67
69217317--69217347	14	2.2	14	94	0	53	67	0	22	9	1.19
69220180--69220234	17	3.2	17	89	2	74	70	0	23	5	1.07
69226298--69226327	14	2.1	14	93	0	51	50	10	0	40	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69226776--69227041	28	9.5	28	95	0	453	27	11	26	34	1.91
69243326--69243383	29	1.9	29	93	6	98	53	0	1	44	1.10
69246440--69246481	15	2.9	15	82	10	52	47	0	0	52	1.00
69246615--69246724	45	2.6	44	81	8	122	33	29	4	32	1.78
69246705--69246772	16	4.2	16	94	0	118	35	36	0	27	1.58
69246705--69246772	32	2.1	32	100	0	136	35	36	0	27	1.58
69249974--69250028	17	3.4	17	72	10	51	60	1	0	38	1.08
69250491--69250814	161	2.0	162	98	0	632	52	14	9	23	1.71
69255476--69255502	3	9.0	3	100	0	54	66	0	0	33	0.92
69256190--69256233	15	2.6	17	86	13	56	79	2	13	4	0.98
69257448--69257548	46	2.2	46	85	3	132	27	24	12	34	1.92
69257947--69258050	53	2.0	53	92	0	172	54	7	15	22	1.66
69263566--69263615	3	16.7	3	95	0	91	68	2	0	30	1.01
69264052--69264077	3	8.7	3	100	0	52	69	0	0	30	0.89
69277995--69278033	19	2.1	19	100	0	78	28	20	25	25	1.99
69277998--69278039	19	2.2	19	91	0	66	33	21	23	21	1.97
69280706--69280767	21	3.0	21	75	0	61	38	17	22	20	1.93
69280712--69280812	40	2.5	41	80	4	114	39	17	19	22	1.92
69293681--69293839	79	2.0	79	97	0	300	38	23	8	29	1.84
69296595--69296643	20	2.5	20	89	0	80	38	14	0	46	1.44
69299620--69299655	17	2.1	18	89	5	56	11	27	22	38	1.88
69301395--69301649	85	3.0	83	89	2	386	25	18	12	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69306167--69306215	17	2.9	17	79	14	57	53	2	0	44	1.12
69306644--69306687	17	2.5	17	88	7	61	77	6	9	6	1.13
69306769--69307226	212	2.2	213	94	2	814	43	6	9	40	1.63
69307290--69307319	12	2.4	13	94	5	53	30	0	0	70	0.88
69307391--69307423	12	2.8	12	95	4	59	12	0	6	81	0.85
69307729--69307821	29	3.2	30	71	19	88	26	1	15	56	1.45
69307990--69308027	15	2.5	16	87	8	53	68	5	0	26	1.11
69308079--69308135	30	1.9	30	89	7	89	57	1	0	40	1.09
69308231--69308274	20	2.2	20	84	4	54	34	2	0	63	1.07
69308302--69308346	19	2.3	20	85	7	58	31	0	4	64	1.13
69309251--69309319	21	3.2	21	74	11	77	34	4	7	53	1.48
69309236--69309320	43	2.0	43	97	0	161	36	3	5	54	1.42
69309245--69309313	22	3.2	22	74	17	81	37	4	7	50	1.50
69309322--69309360	18	2.2	18	86	9	53	25	0	12	61	1.31
69309750--69309810	22	2.8	21	78	7	68	57	0	1	40	1.08
69309754--69309810	15	3.9	15	72	22	59	54	0	1	43	1.10
69313198--69313253	23	2.5	22	82	8	69	37	0	7	55	1.27
69313569--69313641	37	2.0	37	88	0	110	21	20	10	46	1.81
69315630--69315663	11	2.9	12	86	8	52	8	5	32	52	1.56
69316261--69316298	14	2.9	14	92	7	62	23	5	15	55	1.61
69327407--69327456	25	2.0	25	100	0	100	28	20	28	24	1.99
69328980--69329018	18	2.1	19	85	4	53	10	23	0	66	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69329123--69329179	5	11.0	5	75	20	55	3	17	1	77	1.00
69329123--69329179	16	3.7	14	82	15	60	3	17	1	77	1.00
69329123--69329184	21	3.0	21	75	15	58	3	16	3	77	1.03
69343979--69344068	27	3.3	27	92	0	135	38	11	26	23	1.88
69349896--69349950	23	2.3	23	84	3	65	40	1	7	50	1.40
69352210--69352241	8	4.0	8	100	0	64	12	37	12	37	1.81
69352207--69352261	20	3.0	20	76	15	55	12	36	14	36	1.84
69359291--69359479	75	2.5	75	93	0	315	18	27	17	36	1.93
69359263--69359728	25	18.6	25	71	9	245	21	25	18	34	1.96
69359471--69359632	76	2.2	74	81	8	177	20	25	19	33	1.97
69375384--69375565	40	4.6	40	93	2	296	28	25	23	22	1.99
69378062--69378096	17	2.1	17	94	0	61	31	0	34	34	1.58
69378059--69378105	17	2.5	19	76	20	53	29	2	34	34	1.70
69399644--69399688	21	2.1	21	100	0	90	17	4	28	48	1.66
69401713--69401752	13	3.1	13	96	0	71	17	37	30	15	1.90
69421211--69421244	18	1.9	17	88	5	50	52	17	11	17	1.73
69421241--69421307	25	2.7	25	83	0	89	47	11	20	19	1.81
69421749--69421780	16	2.0	16	93	0	55	34	15	18	31	1.93
69421923--69422062	27	5.2	27	82	3	149	27	18	15	38	1.91
69421923--69422043	53	2.3	53	83	1	152	26	20	15	37	1.93
69422048--69422150	27	3.8	27	71	5	82	31	6	24	37	1.81
69429678--69429802	29	4.3	29	85	1	171	31	30	12	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69432248--69432279	13	2.3	15	89	10	50	21	9	0	68	1.17
69443860--69444013	29	5.3	29	92	0	238	31	30	12	25	1.93
69447353--69447377	13	1.9	13	100	0	50	12	24	32	32	1.91
69457574--69457598	13	1.9	13	100	0	50	24	32	32	12	1.91
69457943--69457979	14	2.6	15	83	12	51	18	5	0	75	0.99
69458229--69458698	235	2.0	235	100	0	940	36	10	14	38	1.80
69465813--69465931	45	2.7	44	81	12	161	23	19	31	26	1.98
69479156--69479208	20	2.7	20	91	2	81	32	13	32	22	1.92
69479156--69479216	20	3.1	20	88	2	61	31	13	32	22	1.92
69488510--69488544	17	2.1	17	94	0	61	42	2	5	48	1.41
69491261--69491374	41	2.8	40	77	9	131	34	21	21	21	1.97
69513532--69513631	41	2.5	40	77	12	105	39	20	19	22	1.93
69525566--69525874	47	6.6	47	76	11	233	24	29	19	26	1.98
69525561--69525922	93	3.8	91	77	10	275	24	29	19	27	1.98
69525559--69525917	140	2.5	139	80	6	321	24	29	18	27	1.98
69533029--69533340	47	6.6	47	76	13	248	25	27	18	27	1.98
69533027--69533395	141	2.6	141	79	6	347	24	28	18	27	1.98
69533084--69533387	94	3.3	90	77	9	301	25	28	18	27	1.98
69533084--69533396	47	6.7	47	72	17	172	25	29	18	27	1.98
69534807--69534848	22	1.9	22	90	0	66	35	7	11	45	1.69
69539137--69539267	47	2.8	47	85	0	172	35	29	12	22	1.90
69540817--69540864	25	2.0	25	84	12	64	50	14	8	27	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69551698--69552060	93	3.8	92	77	10	274	25	28	19	27	1.98
69551703--69552011	47	6.6	47	76	13	217	25	28	19	26	1.98
69551698--69552059	140	2.6	140	81	7	385	25	28	19	27	1.98
69558763--69558802	20	2.0	20	100	0	80	30	25	10	35	1.88
69558989--69559114	49	2.6	49	82	7	159	30	26	15	28	1.96
69559039--69559343	94	3.3	91	76	10	287	24	27	19	28	1.98
69558982--69559295	47	6.7	45	68	13	143	25	26	19	28	1.98
69565091--69565221	47	2.8	47	85	0	172	35	29	12	22	1.90
69566785--69566832	25	2.0	25	84	12	64	50	14	8	27	1.71
69569858--69570011	57	2.7	57	79	8	154	32	15	20	31	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279