Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  137  of  279  ( 33431 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44263765--44263791
13
2.1
13
100
0
54
29
14
0
55
1.40
44264250--44264291
6
7.0
6
88
0
57
2
9
69
19
1.28
44264238--44264290
12
4.4
12
87
0
61
3
5
71
18
1.21
44265752--44265834
42
2.0
42
92
2
141
32
14
15
37
1.88
44271519--44271549
16
2.0
16
93
6
55
51
6
22
19
1.69
44280807--44280831
6
4.2
6
100
0
50
68
0
0
32
0.90
44281442--44281481
21
2.0
21
90
5
64
37
5
0
57
1.21
44293635--44293663
6
4.8
6
100
0
58
82
0
0
17
0.66
44297581--44297701
59
2.1
59
98
0
233
42
16
16
23
1.88
44303443--44304224
114
6.9
113
94
1
1305
26
19
26
27
1.99
44303443--44304224
227
3.4
227
94
1
1316
26
19
26
27
1.99
44304124--44304282
73
2.2
73
88
0
228
25
21
23
28
1.99
44304636--44304679
17
2.7
17
89
6
65
29
0
27
43
1.55
44304953--44304990
14
2.7
15
84
12
53
26
0
28
44
1.54
44305013--44305044
15
2.2
14
94
5
55
25
0
37
37
1.56
44305010--44305081
29
2.5
30
69
15
69
25
2
37
34
1.70
44305486--44305586
47
2.2
46
90
3
157
48
7
0
43
1.32
44308702--44308731
14
2.1
14
100
0
60
23
43
0
33
1.54
44309895--44309924
15
2.0
15
93
0
51
50
0
33
16
1.46
44310158--44310191
16
2.1
16
88
0
50
35
0
2
61
1.11
44310267--44310381
43
2.6
44
86
4
153
26
14
29
29
1.95
44310305--44310425
43
2.8
43
82
3
118
27
17
27
28
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44312444--44312473
5
6.0
5
100
0
60
40
0
0
60
0.97
44312502--44312588
30
3.3
25
72
15
68
66
3
26
3
1.23
44313402--44313516
37
2.9
40
78
10
137
25
17
24
33
1.96
44313402--44313535
40
3.4
40
78
7
148
25
17
25
31
1.97
44316256--44316360
52
2.0
52
96
0
192
39
11
5
43
1.64
44317025--44317073
20
2.4
21
82
6
64
30
2
4
63
1.24
44317602--44317662
24
2.6
23
81
2
59
39
4
4
50
1.45
44317626--44317678
23
2.3
23
83
6
63
33
5
3
56
1.41
44317933--44317965
3
11.0
3
87
12
50
33
0
0
66
0.92
44317926--44317957
15
2.1
15
94
0
55
31
3
0
65
1.08
44320989--44321049
29
2.1
29
100
0
122
34
27
0
37
1.57
44321215--44321266
23
2.3
23
83
6
70
34
23
11
30
1.90
44331014--44331068
28
2.0
28
82
7
67
45
1
5
47
1.36
44335711--44335759
24
2.0
26
84
8
66
53
4
2
40
1.32
44336278--44336416
39
3.6
39
85
2
165
30
13
5
50
1.63
44336427--44336477
23
2.3
23
96
3
95
41
11
0
47
1.40
44336439--44336487
23
2.1
23
84
0
62
59
10
0
30
1.31
44338019--44338062
21
2.1
21
82
0
52
34
25
2
38
1.68
44338236--44338301
19
3.5
19
73
8
71
30
3
3
63
1.24
44338216--44338296
38
2.1
38
93
0
135
32
2
2
62
1.21
44344308--44344410
44
2.3
45
83
3
118
31
21
12
34
1.91
44346300--44346343
21
2.1
21
86
0
61
34
43
15
6
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44347711--44348212
126
4.0
126
84
3
618
28
15
15
40
1.88
44347715--44348212
252
2.0
251
86
3
707
27
15
15
40
1.88
44350582--44350653
34
2.1
34
85
10
94
41
15
2
40
1.61
44353190--44353615
211
2.0
211
99
0
843
39
19
11
29
1.87
44360692--44360726
11
3.1
11
88
8
52
48
0
0
51
1.00
44360721--44360848
61
2.1
61
81
8
145
38
4
14
42
1.67
44368202--44368238
19
2.0
19
89
5
58
59
8
2
29
1.40
44378266--44378295
11
2.8
11
95
5
53
53
0
0
46
1.00
44383246--44383278
15
2.1
16
94
5
59
27
6
48
18
1.71
44393640--44393679
7
5.7
7
90
0
62
32
0
10
57
1.32
44393640--44393679
21
1.9
21
100
0
80
32
0
10
57
1.32
44394156--44394224
30
2.3
30
79
0
84
27
40
18
13
1.88
44394731--44394868
56
2.5
56
96
0
258
37
4
8
49
1.54
44397829--44397885
26
2.2
26
90
0
87
17
22
22
36
1.94
44397829--44397997
25
6.8
25
71
9
114
17
24
23
34
1.96
44397805--44397995
25
7.7
24
72
11
93
18
24
23
34
1.96
44399222--44399268
23
2.0
23
95
0
85
48
14
4
31
1.63
44403747--44403827
31
2.5
31
84
7
92
32
16
11
40
1.83
44404007--44404039
9
3.7
9
84
15
50
69
0
0
30
0.88
44404004--44404041
18
2.1
18
100
0
76
65
0
0
34
0.93
44407521--44407632
51
2.2
51
95
1
199
54
3
8
33
1.47
44417646--44417722
29
2.7
29
94
4
131
48
0
5
46
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44427657--44427780
62
2.0
62
98
0
239
39
20
24
16
1.91
44432233--44432258
3
8.7
3
100
0
52
69
0
0
30
0.89
44432963--44433022
30
2.0
30
90
0
93
38
3
11
46
1.57
44434833--44434859
13
2.1
13
100
0
54
29
7
22
40
1.81
44439280--44439348
34
2.0
34
94
0
120
43
15
21
18
1.88
44460737--44460791
27
2.0
27
96
0
101
27
3
23
45
1.69
44463795--44463848
27
1.9
28
85
7
74
44
5
0
50
1.25
44481050--44481144
46
2.1
46
97
0
181
29
7
22
41
1.81
44504049--44504114
32
2.1
32
100
0
132
51
6
9
33
1.58
44507284--44507338
24
2.3
24
84
6
67
29
3
5
61
1.35
44507945--44508001
18
3.2
18
94
0
96
26
26
17
29
1.97
44510273--44510302
6
5.0
6
100
0
60
83
0
0
16
0.65
44511041--44511087
24
2.0
24
86
0
67
38
6
4
51
1.47
44511041--44511104
24
2.7
24
78
9
60
39
6
3
51
1.43
44516325--44516412
42
2.1
43
86
2
124
44
3
6
45
1.47
44516611--44516647
16
2.3
16
86
13
58
59
0
0
40
0.97
44516666--44516733
15
4.4
15
71
16
50
50
1
2
45
1.26
44516680--44516747
34
2.1
34
83
8
88
48
1
4
45
1.31
44517681--44517728
11
4.4
11
76
10
53
39
0
2
58
1.10
44517656--44517717
30
2.1
30
84
6
81
41
0
3
54
1.16
44517660--44517731
30
2.4
30
79
4
74
40
0
2
56
1.13
44525566--44525633
32
2.1
32
100
0
136
11
5
5
76
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44530025--44530102
15
5.2
15
67
11
61
44
7
21
25
1.79
44530021--44530102
30
2.7
30
94
0
137
46
7
21
24
1.77
44534689--44534765
15
5.1
15
69
12
68
44
6
23
25
1.77
44534682--44534765
30
2.8
30
96
0
150
45
5
23
25
1.75
44539380--44539438
22
2.7
21
79
10
64
8
15
8
67
1.40
44539376--44539449
33
2.2
32
81
13
80
9
13
10
66
1.45
44545312--44545358
21
2.2
22
92
3
78
21
19
38
21
1.94
44549247--44549271
2
12.5
2
100
0
50
0
0
48
52
1.00
44550295--44550346
17
2.9
18
80
8
61
25
1
1
71
1.07
44552402--44552444
19
2.1
21
87
8
63
30
6
0
62
1.21
44554685--44554718
18
1.9
17
94
5
59
55
8
0
35
1.31
44567254--44567281
5
5.6
5
100
0
56
64
0
0
35
0.94
44578974--44579062
39
2.3
39
88
0
124
14
23
23
38
1.92
44584493--44584616
64
1.9
64
88
0
185
30
17
13
37
1.89
44584736--44585331
44
13.6
44
67
12
296
35
20
23
20
1.96
44584692--44585337
87
7.4
87
91
1
972
35
20
23
20
1.96
44586569--44586598
15
2.1
14
93
6
51
40
0
3
56
1.16
44586909--44586971
17
3.5
17
72
10
54
30
6
6
57
1.49
44586894--44586984
35
2.6
33
74
19
96
30
4
6
58
1.43
44587010--44587056
23
2.0
24
83
8
60
21
8
4
65
1.37
44587256--44587367
3
37.3
3
71
13
70
33
6
1
58
1.33
44587284--44587352
26
2.6
28
73
21
76
33
7
0
59
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44587569--44587622
3
18.3
3
78
17
60
33
3
0
62
1.12
44595651--44595816
53
3.1
53
88
6
221
25
15
28
30
1.96
44598487--44598533
17
2.7
18
84
12
62
74
0
0
25
0.82
44598487--44598581
28
3.4
29
79
11
94
66
2
1
30
1.10
44598569--44598639
29
2.5
28
81
4
79
56
2
11
29
1.49
44598550--44598598
19
2.6
19
90
0
80
57
4
4
34
1.37
44598550--44598610
19
3.2
19
86
4
70
59
3
4
32
1.35
44598850--44598893
19
2.2
20
84
15
56
29
2
4
63
1.26
44602109--44602153
21
2.2
20
84
4
54
31
13
22
33
1.92
44602172--44602240
32
2.1
35
86
8
99
34
0
1
63
1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279