genome.fa.s8.2.7.7.80.10.50.1000.271.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  271  of  279  ( 33431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88518106--88518200	28	3.4	28	76	0	91	17	13	29	38	1.89
88526164--88526202	19	2.1	19	100	0	78	33	10	25	30	1.89
88526647--88526707	17	3.5	17	68	16	52	34	3	3	59	1.30
88530686--88530734	18	2.7	19	81	12	59	32	10	18	38	1.84
88536975--88537019	18	2.5	18	85	7	56	17	22	37	22	1.94
88537952--88538000	18	2.7	18	84	12	57	32	14	16	36	1.89
88568847--88569005	26	6.1	26	89	5	250	34	7	23	34	1.83
88568847--88569005	52	3.1	52	97	0	291	34	7	23	34	1.83
88569758--88569852	27	3.5	26	85	8	120	20	25	20	34	1.96
88571372--88571571	106	1.9	105	95	1	364	25	26	17	31	1.97
88571812--88572967	576	2.0	576	98	0	2249	32	21	13	32	1.92
88577409--88577504	23	4.2	22	81	5	93	15	15	29	39	1.88
88577409--88577504	46	2.1	46	84	3	122	15	15	29	39	1.88
88579737--88579851	50	2.3	50	93	0	194	17	40	19	22	1.91
88589803--88589837	17	2.0	18	88	5	54	17	37	25	20	1.94
88600800--88600904	43	2.4	43	93	0	183	27	29	17	25	1.97
88601521--88601551	15	2.1	15	93	0	53	54	25	0	19	1.44
88602047--88602073	14	1.9	14	100	0	54	44	22	0	33	1.53
88609349--88609375	14	1.9	14	100	0	54	44	22	0	33	1.53
88609941--88609977	19	1.9	19	94	0	65	29	32	8	29	1.86
88617578--88617633	26	2.2	26	100	0	112	42	33	7	16	1.75
88619994--88620144	74	2.0	74	96	0	275	25	30	17	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88624526--88624555	15	2.0	15	93	0	51	43	6	3	46	1.46
88626289--88626332	22	2.1	22	91	8	74	29	13	29	27	1.94
88627979--88628012	17	2.0	17	88	0	50	64	0	0	35	0.94
88628971--88629027	29	2.0	29	89	6	89	33	47	1	17	1.58
88628996--88629068	37	2.0	37	91	0	119	27	52	2	17	1.59
88629010--88629079	18	3.8	18	69	10	61	25	52	2	18	1.59
88629411--88629535	61	2.0	60	79	11	130	28	4	4	61	1.37
88630004--88630245	126	1.9	126	94	0	430	29	17	15	37	1.90
88641534--88642057	45	11.6	45	67	13	195	28	20	24	25	1.99
88641525--88641990	135	3.5	133	85	4	567	28	21	23	27	1.99
88642279--88642342	29	2.2	29	83	5	85	31	50	1	17	1.55
88642308--88642382	37	2.0	37	94	0	132	28	53	1	17	1.52
88643314--88643557	126	1.9	126	96	0	452	29	17	15	37	1.91
88644014--88644066	21	2.5	21	81	3	61	52	5	9	32	1.57
88651233--88651601	184	2.0	184	97	0	702	36	13	15	35	1.86
88652358--88652403	16	2.9	17	84	15	64	50	0	6	43	1.28
88662611--88662678	33	2.1	33	91	0	109	25	10	35	29	1.89
88666121--88666285	90	1.8	90	82	2	215	26	26	19	28	1.99
88666215--88666329	42	2.7	42	84	0	131	28	26	17	27	1.97
88666347--88666467	48	2.5	48	86	5	156	24	28	18	28	1.98
88667223--88667271	25	2.0	25	100	0	98	28	32	8	30	1.86
88674528--88674601	29	2.6	29	86	4	96	27	16	31	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88683685--88683751	29	2.3	29	75	14	66	46	1	20	31	1.60
88689062--88689115	25	2.1	26	83	10	67	33	7	11	48	1.67
88693824--88693879	27	2.1	27	96	0	103	32	7	17	42	1.77
88695707--88695760	25	2.1	26	86	3	74	35	7	11	46	1.67
88706828--88707193	47	7.7	47	92	1	579	32	8	30	28	1.87
88709768--88709854	40	2.2	40	87	6	124	26	24	27	21	1.99
88722040--88722146	40	2.7	40	86	0	169	25	20	27	27	1.99
88725319--88725352	18	1.9	18	88	5	52	47	8	8	35	1.66
88736675--88736826	42	3.6	41	80	7	169	34	17	21	27	1.95
88738783--88739047	40	6.7	40	85	5	286	26	27	21	24	1.99
88738750--88739047	80	3.7	80	79	9	263	25	27	21	25	1.99
88738979--88739056	40	1.9	41	82	10	97	26	28	20	24	1.99
88746737--88747400	40	16.6	40	98	0	1274	24	30	20	24	1.99
88750974--88751099	42	2.9	42	81	5	137	32	26	17	23	1.97
88750955--88751128	43	4.0	44	76	6	158	32	25	17	24	1.97
88763297--88763378	35	2.3	35	85	6	103	17	10	30	41	1.83
88763812--88763851	18	2.2	18	86	0	53	37	0	22	40	1.54
88768549--88768594	22	2.1	22	100	0	74	30	8	34	26	1.86
88768571--88769553	47	20.9	47	97	0	1777	33	8	28	29	1.87
88769672--88769750	37	2.1	37	88	4	115	25	18	30	25	1.98
88774728--88774799	36	2.0	36	100	0	144	30	27	16	25	1.97
88775110--88775269	68	2.4	68	81	0	185	28	24	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88775760--88775877	17	6.9	17	70	11	80	37	11	9	41	1.74
88778174--88778206	16	2.1	16	100	0	66	33	36	18	12	1.88
88778283--88778321	20	1.9	21	89	5	62	64	2	17	15	1.41
88788602--88788858	40	6.4	40	88	3	324	25	29	22	22	1.99
88794680--88794720	6	6.8	6	97	0	73	70	0	0	29	0.87
88798245--88798284	13	3.1	13	88	0	62	15	32	32	20	1.93
88821572--88821654	43	1.9	43	80	4	96	26	12	24	37	1.90
88827784--88827822	12	3.2	12	92	0	60	15	25	38	20	1.92
88832863--88833027	79	2.1	79	85	6	219	25	21	27	25	2.00
88832863--88833027	40	4.2	40	88	5	221	25	21	27	25	2.00
88839403--88839453	22	2.3	22	83	10	59	43	1	3	50	1.31
88841398--88841434	10	3.5	11	85	10	51	16	8	24	51	1.71
88843314--88843597	50	5.8	50	73	9	228	29	20	27	22	1.98
88843328--88843597	95	2.8	97	82	5	298	28	21	27	22	1.99
88848035--88848086	27	1.9	27	84	7	70	21	13	11	53	1.70
88851968--88852077	56	2.0	56	87	0	157	28	24	14	32	1.94
88862531--88862566	17	2.1	17	89	0	54	50	0	16	33	1.46
88862525--88862576	18	2.8	18	80	11	61	51	0	11	36	1.38
88863946--88864046	29	3.5	29	85	4	134	26	13	29	29	1.94
88868251--88868283	16	2.0	16	94	5	57	54	0	39	6	1.25
88871473--88872002	220	2.4	220	90	1	817	27	21	17	32	1.96
88876310--88876344	18	2.0	17	88	5	52	31	31	11	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88884055--88884998	85	11.1	85	99	0	1870	27	26	8	38	1.84
88891647--88892110	49	9.6	49	94	2	744	28	29	8	33	1.86
88894040--88894159	56	2.1	56	98	0	231	22	23	9	45	1.81
88896645--88896906	39	6.7	39	92	0	427	19	21	29	30	1.97
88899582--88899686	26	4.0	26	91	0	165	32	8	22	36	1.85
88899582--88899686	52	2.0	52	94	0	183	32	8	22	36	1.85
88903911--88904021	39	2.8	38	76	10	116	23	22	24	29	1.99
88913395--88913458	31	2.1	31	90	0	101	25	23	14	37	1.92
88913667--88913796	24	5.4	24	92	0	206	30	20	18	30	1.97
88913854--88913910	9	5.9	9	75	15	51	35	21	8	35	1.84
88913847--88913932	20	4.3	20	93	0	145	32	19	11	36	1.88
88913847--88913921	11	7.4	11	71	17	72	32	20	12	36	1.89
88913969--88914016	25	1.9	25	86	0	69	25	16	25	33	1.96
88931174--88931227	27	2.0	27	85	0	72	40	7	12	38	1.72
88938853--88939266	108	3.8	108	95	1	704	34	18	23	23	1.96
88939505--88939535	16	1.9	16	93	0	53	41	0	22	35	1.54
88946570--88947037	55	8.8	53	78	6	437	35	18	23	22	1.96
88946577--88946990	108	3.8	108	95	1	713	34	18	23	23	1.96
88947234--88947264	16	1.9	16	93	0	53	41	0	22	35	1.54
88952809--88952997	55	3.5	53	81	5	209	22	25	16	34	1.95
88952798--88953005	54	3.9	54	81	4	222	23	25	15	35	1.94
88952969--88953099	47	2.8	46	80	6	165	22	24	16	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88959333--88959415	40	2.1	40	90	0	130	30	15	21	32	1.95
88959391--88959522	40	3.3	40	88	8	173	25	18	27	29	1.98
88959407--88959522	40	2.9	40	93	2	198	24	18	26	30	1.98
88968722--88968905	40	4.6	41	81	12	190	25	27	21	25	2.00
88968722--88968905	79	2.3	81	81	11	213	25	27	21	25	2.00
88970661--88970772	40	2.8	40	86	2	145	27	19	24	28	1.99
88970677--88970857	40	4.5	40	85	6	224	23	18	28	29	1.98
88971878--88972019	71	2.0	71	100	0	284	39	8	11	40	1.71
88974028--88974204	55	3.3	54	84	3	232	23	24	16	35	1.95
88974005--88974212	54	3.9	54	82	4	231	24	25	15	35	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279