genome.fa.s8.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Length:  91122320

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   

This is table  146  of  279  ( 33431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47563182--47563391	40	5.3	39	87	5	233	24	21	28	25	1.99
47563129--47563391	120	2.2	120	81	4	300	25	21	27	25	1.99
47563182--47563426	80	3.1	80	81	3	228	25	21	28	24	1.99
47567317--47567372	29	1.9	29	85	7	78	25	16	19	39	1.91
47567386--47567479	47	2.0	47	95	0	170	20	27	34	18	1.95
47567382--47567494	47	2.6	41	82	15	154	22	28	32	16	1.96
47569913--47569958	21	2.2	21	84	7	58	52	4	0	43	1.21
47576888--47576944	30	1.9	30	85	0	78	45	17	24	12	1.83
47578261--47578313	23	2.3	24	81	15	67	22	22	13	41	1.88
47583374--47583420	25	1.9	24	87	12	69	70	2	10	17	1.26
47584579--47584664	43	2.0	43	88	0	127	51	3	23	22	1.63
47585940--47586036	49	2.0	49	89	4	151	44	6	24	24	1.77
47586364--47586447	28	3.0	27	79	6	96	51	22	0	26	1.49
47586363--47586401	21	1.9	20	85	15	53	53	17	0	28	1.44
47589091--47589121	13	2.4	13	100	0	62	64	0	0	35	0.94
47590547--47590584	7	5.4	7	87	9	51	71	0	28	0	0.87
47590643--47590685	22	2.0	22	81	9	52	13	2	11	72	1.22
47590773--47590980	76	2.6	80	77	9	212	35	3	11	50	1.54
47590773--47590993	40	5.6	41	71	15	155	34	3	11	50	1.55
47596112--47596689	158	3.7	158	91	3	853	28	8	7	55	1.59
47596686--47596719	16	2.2	15	94	5	59	14	5	5	73	1.21
47596620--47596719	17	6.0	16	69	17	62	19	8	6	67	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47596820--47596872	27	2.0	27	85	3	72	58	7	3	30	1.43
47597042--47597083	20	2.1	20	95	0	75	4	30	0	64	1.14
47597084--47597137	4	12.5	4	80	18	56	1	25	0	72	0.95
47597057--47597131	30	2.5	31	86	4	109	4	26	0	69	1.06
47597074--47597140	20	3.0	22	79	16	75	2	25	0	71	1.00
47597024--47597139	50	2.3	50	79	5	128	2	29	0	68	1.03
47601696--47601803	44	2.4	44	87	3	144	29	23	13	33	1.93
47603120--47603227	44	2.4	44	87	3	144	29	23	13	33	1.93
47609928--47609987	30	2.0	30	96	0	111	46	13	5	35	1.65
47612577--47612696	34	3.5	34	94	0	204	39	14	8	38	1.76
47615297--47615326	15	2.0	15	93	0	51	53	3	6	36	1.44
47615301--47615347	23	2.0	23	91	0	76	46	4	6	42	1.48
47615308--47615363	23	2.4	23	84	3	67	46	5	3	44	1.43
47616603--47616692	23	4.0	23	82	7	114	18	21	23	36	1.95
47619250--47619352	33	3.2	33	84	4	131	33	47	6	12	1.68
47619299--47619415	27	4.3	28	68	22	72	30	47	7	14	1.72
47619313--47619495	48	3.8	48	93	0	303	29	48	8	13	1.72
47638115--47638165	26	2.0	26	92	0	84	54	0	7	37	1.29
47639674--47640517	173	4.9	169	73	9	580	27	20	20	30	1.98
47639674--47640302	302	2.1	302	93	0	1078	27	20	20	31	1.97
47640057--47640542	217	2.2	218	89	0	742	26	23	19	30	1.98
47639674--47640470	302	2.6	299	84	4	876	27	21	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47639674--47640518	44	19.5	44	70	10	355	27	20	20	31	1.98
47642178--47642243	25	2.6	25	83	9	71	56	6	18	19	1.62
47647322--47647693	186	2.0	187	93	1	640	28	12	16	43	1.84
47652257--47652292	15	2.5	14	86	8	54	44	8	0	47	1.33
47653895--47653965	20	3.5	19	81	11	79	73	0	4	22	1.01
47653899--47653974	13	5.8	12	75	14	62	75	0	5	19	1.00
47658914--47658949	15	2.5	14	86	8	54	44	8	0	47	1.33
47659163--47659195	11	3.1	11	86	4	50	60	12	0	27	1.32
47661237--47661297	21	3.1	19	81	11	68	52	1	1	44	1.20
47661237--47661317	19	4.1	19	78	13	74	49	3	2	44	1.33
47662774--47662852	29	2.7	29	88	3	115	31	8	16	43	1.79
47669216--47669249	17	2.1	17	88	5	52	41	0	8	50	1.34
47671155--47671188	14	2.5	14	90	4	52	67	2	0	29	1.05
47678927--47678995	16	4.2	16	92	3	120	24	1	37	36	1.65
47678927--47678995	33	2.1	32	94	2	120	24	1	37	36	1.65
47678976--47679066	45	2.0	45	85	2	121	27	6	28	37	1.82
47679231--47679265	18	2.0	17	88	5	52	54	0	0	45	0.99
47679351--47679385	18	2.0	17	88	5	52	54	0	0	45	0.99
47679214--47679801	120	4.9	120	98	0	1122	47	5	2	44	1.38
47679471--47679505	18	2.0	17	88	5	52	54	0	0	45	0.99
47679591--47679625	18	2.0	17	88	5	52	54	0	0	45	0.99
47697036--47697297	39	6.7	40	88	7	337	24	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47713695--47713739	22	2.0	22	86	0	63	40	4	8	46	1.55
47713804--47713842	20	1.9	21	89	5	62	51	5	2	41	1.38
47725742--47725839	43	2.3	43	85	1	135	18	19	33	28	1.95
47725742--47725857	43	2.7	42	81	4	133	19	22	30	27	1.98
47725856--47725927	21	3.4	21	80	0	81	8	44	15	31	1.76
47725866--47725930	21	3.1	21	81	0	85	7	44	15	32	1.75
47725866--47725946	21	3.9	21	81	0	81	7	43	17	32	1.77
47725949--47726164	43	5.0	42	84	5	236	26	32	19	21	1.97
47725949--47726164	86	2.5	86	81	0	270	26	32	19	21	1.97
47725950--47726206	129	2.0	128	81	7	297	26	31	18	22	1.97
47726563--47726664	21	4.9	21	81	0	114	4	42	16	36	1.70
47726646--47726811	66	2.5	66	84	5	203	12	28	18	40	1.87
47730750--47730936	88	2.1	89	86	3	261	44	28	1	25	1.63
47731589--47731723	40	3.4	40	76	8	134	20	22	20	37	1.95
47732515--47732733	90	2.5	90	95	2	390	46	26	1	26	1.63
47733304--47734690	113	12.3	114	87	3	1880	31	24	21	21	1.98
47733304--47734690	227	6.1	226	87	2	1875	31	24	21	21	1.98
47734659--47734792	40	3.4	39	73	10	105	20	18	21	38	1.93
47734755--47734872	59	2.0	59	98	0	227	23	20	22	33	1.97
47738543--47738578	18	1.9	18	88	5	54	38	2	0	58	1.13
47738742--47739055	79	4.0	79	100	0	628	22	16	15	45	1.85
47739859--47739927	35	2.0	35	91	2	113	36	31	8	23	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47748611--47748741	67	2.0	67	95	0	235	28	32	17	21	1.96
47754406--47754645	48	5.0	48	93	0	417	28	19	27	24	1.98
47754406--47754694	48	6.0	48	89	0	416	28	19	28	24	1.98
47754406--47754645	96	2.5	96	99	0	471	28	19	27	24	1.98
47756284--47756415	51	2.6	51	85	0	174	22	16	28	32	1.96
47756426--47756512	45	1.9	45	92	0	147	25	16	24	34	1.95
47763363--47763412	3	16.7	3	100	0	100	32	0	0	68	0.90
47763630--47763697	29	2.3	29	79	5	73	48	11	14	25	1.78
47766621--47766661	21	1.9	22	85	5	57	36	4	7	51	1.51
47766725--47766753	12	2.3	13	94	5	51	34	10	0	55	1.34
47779054--47779574	131	4.0	131	88	1	776	29	20	23	25	1.99
47781278--47781318	21	1.9	22	85	5	57	36	4	7	51	1.51
47782617--47782660	22	2.0	22	86	4	63	63	2	4	29	1.26
47782728--47782790	26	2.4	27	81	5	76	46	1	11	41	1.49
47782860--47782905	3	15.0	3	86	13	67	63	2	2	32	1.19
47783152--47783188	16	2.3	16	100	0	74	43	32	10	13	1.79
47783646--47783688	14	3.1	13	86	10	50	76	0	4	18	0.95
47784649--47784929	139	2.0	139	84	2	370	29	20	19	30	1.97
47784986--47785075	44	2.0	44	82	4	110	28	17	16	36	1.92
47785272--47785363	44	2.1	44	83	0	112	26	26	20	27	1.99
47786141--47786428	97	3.0	97	91	2	445	47	8	15	27	1.74
47786698--47786744	5	9.8	5	80	15	55	0	19	0	80	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47786711--47786772	10	6.6	9	77	17	63	0	19	1	79	0.82
47786706--47786745	13	2.9	14	88	7	64	0	17	0	82	0.67
47786697--47786765	19	3.9	18	83	11	81	0	18	1	79	0.80
47786715--47786777	21	3.2	21	72	18	55	1	17	1	79	0.89
47789085--47789126	20	2.1	20	100	0	84	40	9	21	28	1.84
47791735--47791797	22	2.7	23	80	9	65	57	1	6	34	1.34
47791863--47791912	26	1.9	26	87	0	73	44	2	12	42	1.53
47791866--47791924	26	2.4	24	80	11	66	45	1	10	42	1.48
47792750--47792782	12	2.8	12	100	0	66	84	0	0	15	0.61
47792750--47792794	17	2.6	17	80	13	56	82	2	2	13	0.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279